Gene detail

Detail information of GWHGAAZE009280

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010905396.1	3.5416E-129	PREDICTED: ras-related protein Rab2BV [Elaeis guineensis]
Swissprot	tr\|Q40193\|RB11C_LOTJA	9E-127	Ras-related protein Rab11C
trEMBL	tr\|B9HBS5\|B9HBS5_POPTR	4E-128	Uncharacterized protein {ECO:0000313\|EMBL:EEE91361.2}
TAIR10	AT3G46830.1	3E-94	RAB GTPase homolog A2C

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	107072375	107074448	-
GWHAAZE00000002	mRNA	107072375	107074448	-
GWHAAZE00000002	exon	107074383	107074448	-
GWHAAZE00000002	exon	107074057	107074250	-
GWHAAZE00000002	exon	107072375	107072863	-
GWHAAZE00000002	five_prime_UTR	107074383	107074448	-
GWHAAZE00000002	five_prime_UTR	107074228	107074250	-
GWHAAZE00000002	CDS	107074057	107074227	-
GWHAAZE00000002	CDS	107072375	107072863	-

Transcript Sequence
>GWHTAAZE009290 TCACAAAAATCCTCAAAACTCATTCATCAATCGCTCTTAAAACTCCACTCTCATCTCTCCTTTACGTTGTGAAGAAGGAAATAGAAAGGATGGGGCATAGAGTAACTGATCATAATGAGTACGATTATCTGTTCAAGATAGTGTTGATCGGAGACTCTGGTGTTGGAAAATCCAATATTCTATCCAGGTACACGAGAAATGAGTTCTGTTTGGAATCCAAGTCCACCATTGGAGTCGAATTCGCTACCAAAACTCTTCAGGTAGATGGAAAGATGGTTAAGGTCCAGATATGGGACACTGCAGGCCAGGAGAGGTACAGAGCAATCACCAGTGCTTACTACAGAGGAGCAGTCGGCGCCTTTCTTGTTTATGACATAACCAAGAGGCAAACCTTCGAAAACATACAAAGATGGCTACGTGAATTGAGAGACCATGCTGATGCCAACATTATTATCATGATGGCTGGTAACAAGTCGGACCTAAAACACCTCAAAACCGTCCAAGAACACGAGGGTCAAGTATTAGCTGAGAAGGAAGGGCTTTTTTTCCTAGAGACATCGGCTTTAGAAGCCTACAACATTGAGAAGGCATTCCAAACAGTTTTGACAGAGATATATAGTGTTATAAGCAAGAAGGCATTGGCAGCCCAAGAAGCAGAGGCCGCCAACACCACGGTCCCCAATGTGGGGACCACCCTTAACGTTGGAGATTCACAGGGTGGTGCAAAGAGCAGGTGCTGCTCCACTTAA

Network for GWHGAAZE009280

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.23	Ras	16	176	7.00E-60

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07904	RAB11A	Endocytosis	map04144
		Pancreatic secretion	map04972
		Vasopressin-regulated water reabsorption	map04962
		Endocrine and other factor-regulated calcium reabsorption	map04961

Gene Ontology

GO term	Ontology	Name
GO:0005525	molecular_function	GTP binding
GO:0003924	molecular_function	GTPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.389
	SRR3591708	Shoot apex	0.744
	SRR3591709	Stem	0.230
	SRR3591710	White floral bud	0.613
	SRR3591711	White flower	0.250
	SRR3591712	Green floral bud	0.546
	SRR3591713	Yellow flower	0.409
SRP173429	SRR8316895	Juvenile bud stage	0.674
	SRR8316896	Juvenile bud stage	0.846
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.225
	SRR8316900	Third green stage	0.787
	SRR8316901	Third green stage	0.404
	SRR8316898	Complete white stage	0.126
	SRR8316899	Complete white stage	1.151
	SRR8316903	Complete white stage	0.066
	SRR8316902	Silver flowering stage	0.173
	SRR8316904	Silver flowering stage	0.183
	SRR8316905	Silver flowering stage	0.103
	SRR8316906	Gold flowering stage	0.228
	SRR8316907	Gold flowering stage	0.113
	SRR8316908	Gold flowering stage	0.338
SRP132670	SRR6706286	Control	0.667
	SRR6706287	Light intensity 50%	0.496
	SRR6706288	Light intensity 20%	0.772
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.654
	CNS0095593	Slightly white alabastrum(diploid) 2	0.630
	CNS0095594	Slightly white alabastrum(diploid) 3	0.376
	CNS0095595	Whole white alabastrum(diploid) 2	1.251
	CNS0095596	Whole white alabastrum(diploid) 3	0.473
	CNS0095597	Whole white alabastrum(diploid) 4	1.392
	CNS0095598	Silvery flower (diploied) 1	0.594
	CNS0095599	Silvery flower (diploied) 2	0.881
	CNS0095600	Silvery flower (diploied) 3	0.368
	CNS0095601	Golden flower (diploid) 1	0.113
	CNS0095602	Golden flower (diploid) 2	0.481
	CNS0095603	Golden flower (diploid) 3	0.468
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.456
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.313
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.773
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.254
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.451
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.838
	CNS0095610	Silvery flower (diploied) 1	0.233
	CNS0095611	Silvery flower (diploied) 2	0.152
	CNS0095612	Silvery flower (diploied) 3	0.081
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.087
CRA001975	CRR073297	Stem 1	1.608
	CRR073298	Stem 2	0.519
	CRR073299	Stem 3	0.331
	CRR073300	Leaf 1	1.142
	CRR073301	Leaf 2	0.499
	CRR073302	Leaf 3	0.427
	CRR073303	Juvenile bud 1	0.423
	CRR073304	Juvenile bud 2	0.529
	CRR073305	Juvenile bud 3	0.659
	CRR073306	Third green 1	0.116
	CRR073307	Third green 2	0.175
	CRR073308	Third green 3	0.046
	CRR073309	Second white 1	0.105
	CRR073310	Second white 2	0.342
	CRR073311	Second white 3	0.125
	CRR073312	Silver flowering 1	0.097
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.010
	CRR073316	Gold flowering 2	0.298
	CRR073317	Gold flowering 3	0.169
	CRR073318	Tawny withering 1	1.434
	CRR073319	Tawny withering 2	0.784
	CRR073320	Tawny withering 3	1.846