Gene detail

Detail information of GWHGAAZE009406

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010650843.1	PREDICTED: E3 ubiquitin-protein ligase listerin [Vitis vinifera]
Swissprot	tr\|Q9FGI1\|LTN1_ARATH	E3 ubiquitin-protein ligase listerin
trEMBL	tr\|A0A068U6E1\|A0A068U6E1_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP04076.1}
TAIR10	AT5G58410.1	HEAT/U-box domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	109559754	109573441	-
GWHAAZE00000002	mRNA	109559754	109573441	-
GWHAAZE00000002	exon	109559754	109560055	-
GWHAAZE00000002	exon	109560421	109560651	-
GWHAAZE00000002	exon	109561381	109561839	-
GWHAAZE00000002	exon	109562030	109563048	-
GWHAAZE00000002	exon	109563885	109564572	-
GWHAAZE00000002	exon	109565258	109565990	-
GWHAAZE00000002	exon	109566476	109566981	-
GWHAAZE00000002	exon	109568681	109569107	-
GWHAAZE00000002	exon	109569255	109569913	-
GWHAAZE00000002	exon	109572543	109572619	-
GWHAAZE00000002	exon	109573213	109573441	-
GWHAAZE00000002	CDS	109573213	109573441	-
GWHAAZE00000002	CDS	109572543	109572619	-
GWHAAZE00000002	CDS	109569255	109569913	-
GWHAAZE00000002	CDS	109568681	109569107	-
GWHAAZE00000002	CDS	109566476	109566981	-
GWHAAZE00000002	CDS	109565258	109565990	-
GWHAAZE00000002	CDS	109563885	109564572	-
GWHAAZE00000002	CDS	109562030	109563048	-
GWHAAZE00000002	CDS	109561381	109561839	-
GWHAAZE00000002	CDS	109560421	109560651	-
GWHAAZE00000002	CDS	109559828	109560055	-
GWHAAZE00000002	three_prime_UTR	109559754	109559827	-

Transcript Sequence
>GWHTAAZE009416 ATGTTTATCATGGAAAAAATCTTATATATTCAAATTCTGAAACAGGCGGCATTTCCAGCACAGGAGAAAAGACTAGATGCCTTAATTTTATGTACAAATGAGATTTTCATGTATTTAGAAGAAAATCTAAAGCTCACTCCCCAAAGTTTGTCTGATAAAGCAGTTGCTTTGGATGAACTGGAAGAGATTCACCAGCAGGTATGCACCATGCGATCAGGGTATATTTCTCGCGAGGCGGTGGTTCGGCAATTTGAGGCTTACACCTCGGAGGTGAATGGTGAGGCTTACGCCTCGGCAGCATCAGGCGTGATTTCTTCGTCATTGCTCGCATTTGCCACTCTTCTCGATATTTTGGCATGCTTTCATTTCGAAAGACCCGGTTTTGAAAATCTAACCGCGGAACCGAAAAATGCTTCAAAAGCTAGGGCAACCGCTATCGCTTGTGCAGAAAAGTTGTTTTGTACTCATAAATATTTTCTAGACTTTCTCAAGTCTCAAAGCCCTGCCATCCGGTCAGCTACGTATTCTGTGCTAAGGAGTTGCGTTAAGAACATTTCTCATGCCTTTAACGAAGGAAATATGAAAACTCTTTCCGCTGCAATACTTGGTGCTTTCCAGGAAAAAGATCCATCTTGCCATTCATCAATGTGGGAAGTGGTTTTACTATTTTCTAAGAAGTTTCCGGAAAGTTGGACTTCCTTGAATATTTCGAAAATTGTGCTAAGTCGGCTTTGGCATTTTCTCAAGAGCGGTTGCTTTGGATCACAGCAAGTTTCTTATCCAGCATTGATTCTGTTTTTAGAAACAGTACCTCCTAAAGCAATAGTGGGTGAAAAATTCTTCCTTGAGTTTTTTCAGAACCTGTGGGCTGGAAGAAATCTGTCCCAAGCCTTAAATGCTCATCGAAATGATCTCTTCTCGGCATTTAGAGAATGTTTCCTCTGGGGATTACAAAATGCTTCAAGATATTGTGATGGAGTAGATGCTGTTCATAATTTCTGGCATGGCCTTGTTGAGAAGATTCTTTTAAATCTTTTGTGGAGTGACTACCTTCTGTCTAGGGTTCAACCTTTCCGCAAGGAAACAATGGAAAAACTCGACATTACATACCCAATGGTTTTCGTGCAAGATTTAGGAAAATGCATTATTGAAATTCTTTCTGGCATTTATTCCCTGGAAACTGACCTCCTCCTTGTTTTCTCTTCACCATTTCAAGAGAACTGCCTTGATTTATTTCAGCAGAAGAATGTAGGCAGTCCCGAGCAAATAGAGCGAATCATCAATTTTTTGTTGTTACTGGACCAAAATGCAGTACAGAAAGGTGAAATATGGCCCTTGGTTCATCTAGTGGGACCATTGTTGGCGAAGTCTTCTCGGCTTATTAGAACACTTGATTCACCAGAGACTGTGAGACTTATAGCGGTTGCCGTCTCGATATTTGGACCACGCAAGATAATTCGCGAACTTATTTGCAATGAAAGCAATTCCAATGATCACAAAATTTATAGTAGCAATGAGGAATTGGACTTGGAACAGTTTTTGCAAGCATACGAGGAAATTTTTATCCCTTGGTGCTTGGAAAAAAACAGTTACTCTACCAGCTCTCGCTTAGATCTCTTGCTTGCATTACTCGACAATGAATGCTTTTCAGAGCAGTGGAATAGTATAATTACTCATGCGACAAATCTAGAAAATCAAGATTCCAGCCACTTTTCTGTATTGACCATGCTCATGGAGAAAACAAGAGAGGAAGTTAAGAAGAGGAAGCTGGGAGCGGATATTAATCATCTGCAAGGCTCCCACCCTGAGGATTGGCATCATAAGCTTCTAGATTCGGCTGCTCTTTTTGTTGCCCGATCTCTTCCCCTTTTTGGAACTTCTGGTGCTGGGTTTTTATGTGCTCTTCTTGGTGGCTCAATAGAGGATGATCAAACTGCCTTTGTGACCAGAGATACATCAATTCTGATATTTGAGGAGGTTTTTAAAATTTTACATAATTTCATGATGGATTCTACCTTTAATTGGGTTAAGGATGCATGTTCCTTATTAACTACTGGTGGAAATAATTCTATGCCCATATTTGAATCTTCGGTCAGTGTGCTTGAAATGGCTCATTTTGCACTGGAAGTACTTCATGGTAGCTTCTTTTGCTTAAAGGATTTCCATGACAGAACCGAGCTGGTTTCCGGCATTTTATCTGCAATTATTGTGATTGACTGGGAATGTAGCATGGCAACTGTCATCAATGACGAACTTTGCAATGAACCTATGAAAAAAGTCAAGGCCAGGTTGACTTTTAGTGAATCTGTGCACACTTTTCGAGGCAAAATATCTGACCAAATCTTCAGAACCGTCAGCATAAACTGTCAGAAAAGATTGGAAAGTATTTTGATCGAATCTATCAAGTATGCTATATTCAAGGAAGATAAGTTAGATACTGATAAAATCACTTCATTATGCTGCGTTTGGATGATTGAAGTTATTGAATGTCTGTGTGAAGATCAAGTCGAGGAACAAAAATTATTAGACCAGTTTCTGAGCAAGAGTGATTTGTGGCCTTTGTACATCATTCCAGATATCAGTAGTGGAAAGAGAGCAGCCACCTTGAAAATTGAACACGTGACTATTAATGAACTTATGAGTGAACATGTTTACTATGTGCAGGAGTCCAAGAATCACAAATTTGTTGCTTTAATCGACAAACTAATTTCCAAAATTGGGATCAGTAGAGTTATTGCAGGTTCTGTTTCTCATATCCCATCTACTACCAAGGAGCCAACAAAAGCACTTGGGACATCCAAATCTTATTATCCTCGTGCCTGGCTTGCTGCCGAGATATTATGCACATGGAAATGGCAAGGTGGCAGTGCTTTAAGCTCATTCTTACCTTTATTAACTGCATACATAAAGAGTGAAGACTATTCTCTCAAGGATGGCTTGTTGGATTCCATCATCAACATTTTGCTTGATGGTGCTCTTGTCCATGGAGCAAGTGGGGAACCAAGTGAACTGGAGAGTATAGAAGAACCCTTTTTGAGGGCTCTTGTATCATTACTTCTCACTCTTTACGAGAACAATATATGGGGGAAGCAAAAGGCCATATCACTTTTTGAAGTGCTCGTAAATAAACTTTTTGTTGGTGAGACGGTTAATTCGAATTGTTTGAGGATACTTCCTCTTGTTATGAGTGTCCTCATAAGACCCTTGAGCATTGATTCTGATGATTCTGTTGAGGGAAACAAGGTCATTCACAGCATTGAGGACTGGCTCCGTACCACTCTATCTTTCCCACCTTTAAGTGAATGGCAAACAGGGAAAGATATGGAAGACTGGTTTCTTTTGGTTATATCTTGTTATCCCTTGAGAGAAGGGTTAAAACCAGAGAGAGACATCACACCTGTGGAAAAAACTCTTGTACTTGAACTACTTCGGAAGCAGAGGCAACAATCATATGCAGCTAATAAGCTACCTGTGGTGCAAATGCTCCTATCGAAGCTAATAGTTGTTTCAGTTGGTTATTGCTCGAACGAATTTAATGAAGATGATTGGGATTTTGTACTATATCGGTTGAGATGGTGGATTGAATCTACGGTCGTGATGATGGAAGAAGTTGCCGAGAATGTAAATGATGCTATCACAAACTCCTCTACTTCTGATGACATTGAAGTAACCCTAGAGAAGCTCAAGCACTCTGTTTCAGTTTTAAACCCTAATCCTATCATACTTGCAAGAAACGCGCTTGTTGCGTTTTCTCTGTTTTGTAGGCTTATTGGACAGCAAAAGATTGAAGATTCGGATAGTTCTACTAACCCCTTGAGAACCGAGAAATGGGAAGTAGTAAAAGATCGGATTCTTGAAGGAATCCTTCGTTTATTCTTTTCCACCGGGGCTGCTGAGGCCATTGCAAGTTCCGTTTGTGCGGAGGGTTCATCGCTTATTGCGTCAACTCGGCTTGATCATCCTCACTTCTGGGAATTAGTTGCTTCTAATGTGGTTGATTCCCCTCCACATGCTAGAGATAAGGCAGTGAAATCAGTGGAAATTTGGGGGCTAAGTAAGGGGCCCATTAGCTCTTTGTATGCCATTCTCTTTTCCTCGAAACCAGTTTCTTGTATGCAGTTTGCTGCTTTTGTTATTCTTTCGTCTGAACCTGTATCACAATTGGCTTTTGTTAAAGAGGAAACTTGTGTTTTGGAGGGGAATACTGCTGAGGACCAGGATTCTAGCCGTCTTGATTCATCTTTAGAAGACAATGTTCGTTTGAGGAGTGAGATTTCGAGCATGCTTGAAAAATCACCATACGTGATTCTTGAAATGGATCTGGTGGCACCAGATCGGGTGAATGTATTTCTTGCTTGGTCTTTGTTGCTATCGCATTTACTCTCATTACCATCATCATCCCCTACTAAGGAAAGATTAATTCAGCATATACAAGAGTCTGCTAATTCAACAATATTGGACTGTATTTTCCAGCATATTCCTCTGGAATTATGTATGAACACTAACTTAAAGAAGAGAGATGCTGAACTTCCAGCTGGGGTATTAGAGATTGCAAAATCAGCTACCCAGGCCATAAGAAACAGCTCAGTACTGTTTTCTGTGGAATCACTTTGGCCTGTTGGACCAGAAAAAATGGCTTCAGTAGCTGGGGCTCTATTTGGTTTGATGCTTCGAATTCTTCCCGCTTATGTTCGGGGGTGGTTTAATGATATACGCGATCGCTCTATATCTTCTACAATCGAGTCTTTCACAAAAGCGTGGTGTAGTCCACCTCTAATCACAAATGAACTATCTCAGATCAAGAAAGGCAATTTTTCAGATGAGAATTTTTCGGTAAGTGTGAGCAAATCAGCAAATGAGGTGGTTGCAACCTACACGAAGGATGAAACAGGAATGGATTTAGTAATTCGTCTTCCTGCATCTTACCCACTGCGACCAGTGGAGGTAGACTGTACAAGGAGCCTTGGCATTAGTGAAGTGAAGCAGAGGAAATGGATTATGTCTATGATCTCGTTTGTTCGTAATCAGAATGGAGCCTTGGCGGAAGCAATACGAACATGGAAGAGTAACTTCGACAAGGAATTCGAAGGTGTTGAGGAGTGTCCTATCTGCTATAGTGTCATCCACACTTCTAACCATAGCCTACCACGACTCGCTTGCAAAACCTGCAAGCACAAGTTCCATTCAGCTTGCCTGTACAAGTGGTTCTCAACTTCTCATAAATCAACTTGCCCATTGTGCCAATCCCCATTTTGATCTTCAACATCTCCATTTTGAGTCTCCACATGTTAAAACTTATACAAGTGCAAAACAAATTTAACTTGACATGC

Network for GWHGAAZE009406

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	1700	1748	2.90E-07

Protein Sequence

>GWHPAAZE009411
MFIMEKILYIQILKQAAFPAQEKRLDALILCTNEIFMYLEENLKLTPQSLSDKAVALDELEEIHQQVCTMRSGYISREAVVRQFEAYTSEVNGEAYASAASGVISSSLLAFATLLDILACFHFERPGFENLTAEPKNASKARATAIACAEKLFCTHKYFLDFLKSQSPAIRSATYSVLRSCVKNISHAFNEGNMKTLSAAILGAFQEKDPSCHSSMWEVVLLFSKKFPESWTSLNISKIVLSRLWHFLKSGCFGSQQVSYPALILFLETVPPKAIVGEKFFLEFFQNLWAGRNLSQALNAHRNDLFSAFRECFLWGLQNASRYCDGVDAVHNFWHGLVEKILLNLLWSDYLLSRVQPFRKETMEKLDITYPMVFVQDLGKCIIEILSGIYSLETDLLLVFSSPFQENCLDLFQQKNVGSPEQIERIINFLLLLDQNAVQKGEIWPLVHLVGPLLAKSSRLIRTLDSPETVRLIAVAVSIFGPRKIIRELICNESNSNDHKIYSSNEELDLEQFLQAYEEIFIPWCLEKNSYSTSSRLDLLLALLDNECFSEQWNSIITHATNLENQDSSHFSVLTMLMEKTREEVKKRKLGADINHLQGSHPEDWHHKLLDSAALFVARSLPLFGTSGAGFLCALLGGSIEDDQTAFVTRDTSILIFEEVFKILHNFMMDSTFNWVKDACSLLTTGGNNSMPIFESSVSVLEMAHFALEVLHGSFFCLKDFHDRTELVSGILSAIIVIDWECSMATVINDELCNEPMKKVKARLTFSESVHTFRGKISDQIFRTVSINCQKRLESILIESIKYAIFKEDKLDTDKITSLCCVWMIEVIECLCEDQVEEQKLLDQFLSKSDLWPLYIIPDISSGKRAATLKIEHVTINELMSEHVYYVQESKNHKFVALIDKLISKIGISRVIAGSVSHIPSTTKEPTKALGTSKSYYPRAWLAAEILCTWKWQGGSALSSFLPLLTAYIKSEDYSLKDGLLDSIINILLDGALVHGASGEPSELESIEEPFLRALVSLLLTLYENNIWGKQKAISLFEVLVNKLFVGETVNSNCLRILPLVMSVLIRPLSIDSDDSVEGNKVIHSIEDWLRTTLSFPPLSEWQTGKDMEDWFLLVISCYPLREGLKPERDITPVEKTLVLELLRKQRQQSYAANKLPVVQMLLSKLIVVSVGYCSNEFNEDDWDFVLYRLRWWIESTVVMMEEVAENVNDAITNSSTSDDIEVTLEKLKHSVSVLNPNPIILARNALVAFSLFCRLIGQQKIEDSDSSTNPLRTEKWEVVKDRILEGILRLFFSTGAAEAIASSVCAEGSSLIASTRLDHPHFWELVASNVVDSPPHARDKAVKSVEIWGLSKGPISSLYAILFSSKPVSCMQFAAFVILSSEPVSQLAFVKEETCVLEGNTAEDQDSSRLDSSLEDNVRLRSEISSMLEKSPYVILEMDLVAPDRVNVFLAWSLLLSHLLSLPSSSPTKERLIQHIQESANSTILDCIFQHIPLELCMNTNLKKRDAELPAGVLEIAKSATQAIRNSSVLFSVESLWPVGPEKMASVAGALFGLMLRILPAYVRGWFNDIRDRSISSTIESFTKAWCSPPLITNELSQIKKGNFSDENFSVSVSKSANEVVATYTKDETGMDLVIRLPASYPLRPVEVDCTRSLGISEVKQRKWIMSMISFVRNQNGALAEAIRTWKSNFDKEFEGVEECPICYSVIHTSNHSLPRLACKTCKHKFHSACLYKWFSTSHKSTCPLCQSPF

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.331
	SRR3591706	second leaf	9.166
	SRR3591707	mature leaf	13.201
	SRR3591708	Shoot apex	11.744
	SRR3591709	Stem	18.057
	SRR3591710	White floral bud	16.100
	SRR3591711	White flower	21.888
	SRR3591712	Green floral bud	15.800
	SRR3591713	Yellow flower	17.197
SRP173429	SRR8316895	Juvenile bud stage	8.484
	SRR8316896	Juvenile bud stage	10.391
	SRR8316897	Juvenile bud stage	5.195
	SRR8316894	Third green stage	4.859
	SRR8316900	Third green stage	9.940
	SRR8316901	Third green stage	10.021
	SRR8316898	Complete white stage	3.374
	SRR8316899	Complete white stage	12.502
	SRR8316903	Complete white stage	8.534
	SRR8316902	Silver flowering stage	4.979
	SRR8316904	Silver flowering stage	11.664
	SRR8316905	Silver flowering stage	3.796
	SRR8316906	Gold flowering stage	14.501
	SRR8316907	Gold flowering stage	12.382
	SRR8316908	Gold flowering stage	13.074
SRP132670	SRR6706286	Control	4.766
	SRR6706287	Light intensity 50%	5.319
	SRR6706288	Light intensity 20%	5.988
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.520
	CNS0095593	Slightly white alabastrum(diploid) 2	5.854
	CNS0095594	Slightly white alabastrum(diploid) 3	7.136
	CNS0095595	Whole white alabastrum(diploid) 2	4.886
	CNS0095596	Whole white alabastrum(diploid) 3	4.701
	CNS0095597	Whole white alabastrum(diploid) 4	6.083
	CNS0095598	Silvery flower (diploied) 1	10.538
	CNS0095599	Silvery flower (diploied) 2	9.403
	CNS0095600	Silvery flower (diploied) 3	18.251
	CNS0095601	Golden flower (diploid) 1	7.633
	CNS0095602	Golden flower (diploid) 2	20.275
	CNS0095603	Golden flower (diploid) 3	19.035
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.851
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.286
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.971
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.918
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.726
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.899
	CNS0095610	Silvery flower (diploied) 1	14.856
	CNS0095611	Silvery flower (diploied) 2	17.772
	CNS0095612	Silvery flower (diploied) 3	11.876
	CNS0095613	Golden flower (tetraploid) 1	6.407
	CNS0095614	Golden flower (tetraploid) 2	12.267
	CNS0095615	Golden flower (tetraploid) 3	18.947
CRA001975	CRR073297	Stem 1	8.421
	CRR073298	Stem 2	7.588
	CRR073299	Stem 3	4.546
	CRR073300	Leaf 1	7.859
	CRR073301	Leaf 2	6.504
	CRR073302	Leaf 3	4.124
	CRR073303	Juvenile bud 1	5.339
	CRR073304	Juvenile bud 2	3.040
	CRR073305	Juvenile bud 3	6.788
	CRR073306	Third green 1	1.944
	CRR073307	Third green 2	2.639
	CRR073308	Third green 3	2.874
	CRR073309	Second white 1	2.448
	CRR073310	Second white 2	5.086
	CRR073311	Second white 3	6.715
	CRR073312	Silver flowering 1	5.245
	CRR073313	Silver flowering 2	3.577
	CRR073314	Silver flowering 3	5.274
	CRR073315	Gold flowering 1	2.983
	CRR073316	Gold flowering 2	7.434
	CRR073317	Gold flowering 3	2.843
	CRR073318	Tawny withering 1	5.371
	CRR073319	Tawny withering 2	5.704
	CRR073320	Tawny withering 3	4.860