Gene detail

Detail information of GWHGAAZE009442

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008240070.1	4.42594E-79	PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like [Prunus mume]
Swissprot	tr\|O04682\|PTI6_SOLLC	7E-65	Pathogenesis-related genes transcriptional activator PTI6
trEMBL	tr\|M5WFF2\|M5WFF2_PRUPE	5E-78	Uncharacterized protein {ECO:0000313\|EMBL:EMJ07983.1}
TAIR10	AT4G27950.1	7E-26	cytokinin response factor 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	110371885	110372550	-
GWHAAZE00000002	mRNA	110371885	110372550	-
GWHAAZE00000002	exon	110371885	110372550	-
GWHAAZE00000002	CDS	110371885	110372550	-

Transcript Sequence
>GWHTAAZE009452 ATGACCTCTGCCGACCCTCCCACCATTTTCCGCCGAAAGTTCGTCAGGATCACTCTAACCGATGCCGACGCCACCGATTCCTCCGGCGACGATGACGATTCCCATCGGAGAATTGTGAGGAGACACATCAGAGAGATTGATTTCAAGATTTCTCCGGAGAGACAGAGTTCTGCTCCGAAGCCTAGGAAACGGAGCTTCCGATCACCTGAGTATGACGTCAGCCGCCGAAAAAGGTTCAGAGGCGTACGTCAGCGCCCGTGGGGGCGGTGGGCAGCCGAGATCCGAGATCCCGCCCGCCGGAAACGGCTATGGCTCGGTACGTACGACACACCGGAAGAGGCGGCCACCGTGTACGACCGTGCCGCAGTCACTTTGAAAGGACCCGACGCCGTTACCAACTTTCCTAAGGTTACGGTGACGGAAACTGTCTTCGAAAAGGAGCAGAGTGGAAAAGAGTTACAAAGCGACGTCTCTTTGTCACCGACTTCAGTTCTCCGATACGACAACTTAACGTCGTTCGACGGATTCAGTTACGGGGAGGTTGACGCTTTCGGATTTGATATAGACATGCAATTAACCTTGCCGGATATCATGGTGTCGGATAAGTACTTCGCCGAGGAATTCGGCGAGTTTGACTTGGATGATTTTCTCGTTGACGTCAGATAA

Network for GWHGAAZE009442

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	78	127	6.70E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
K13434	PTI6	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.733
	SRR3591706	second leaf	4.197
	SRR3591707	mature leaf	12.685
	SRR3591708	Shoot apex	10.177
	SRR3591709	Stem	52.657
	SRR3591710	White floral bud	37.781
	SRR3591711	White flower	30.107
	SRR3591712	Green floral bud	94.658
	SRR3591713	Yellow flower	9.713
SRP173429	SRR8316895	Juvenile bud stage	10.406
	SRR8316896	Juvenile bud stage	22.266
	SRR8316897	Juvenile bud stage	11.446
	SRR8316894	Third green stage	12.164
	SRR8316900	Third green stage	64.090
	SRR8316901	Third green stage	58.723
	SRR8316898	Complete white stage	6.042
	SRR8316899	Complete white stage	64.269
	SRR8316903	Complete white stage	10.263
	SRR8316902	Silver flowering stage	3.637
	SRR8316904	Silver flowering stage	5.621
	SRR8316905	Silver flowering stage	2.222
	SRR8316906	Gold flowering stage	3.274
	SRR8316907	Gold flowering stage	2.611
	SRR8316908	Gold flowering stage	5.520
SRP132670	SRR6706286	Control	63.245
	SRR6706287	Light intensity 50%	59.417
	SRR6706288	Light intensity 20%	73.158
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.903
	CNS0095593	Slightly white alabastrum(diploid) 2	23.925
	CNS0095594	Slightly white alabastrum(diploid) 3	16.339
	CNS0095595	Whole white alabastrum(diploid) 2	33.752
	CNS0095596	Whole white alabastrum(diploid) 3	49.749
	CNS0095597	Whole white alabastrum(diploid) 4	26.982
	CNS0095598	Silvery flower (diploied) 1	23.986
	CNS0095599	Silvery flower (diploied) 2	14.692
	CNS0095600	Silvery flower (diploied) 3	20.418
	CNS0095601	Golden flower (diploid) 1	18.623
	CNS0095602	Golden flower (diploid) 2	13.355
	CNS0095603	Golden flower (diploid) 3	16.154
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.587
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.989
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.394
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.253
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.239
	CNS0095609	Whole white alabastrum(tetraploid) 3	64.446
	CNS0095610	Silvery flower (diploied) 1	19.263
	CNS0095611	Silvery flower (diploied) 2	19.763
	CNS0095612	Silvery flower (diploied) 3	8.667
	CNS0095613	Golden flower (tetraploid) 1	5.105
	CNS0095614	Golden flower (tetraploid) 2	12.008
	CNS0095615	Golden flower (tetraploid) 3	4.611
CRA001975	CRR073297	Stem 1	51.153
	CRR073298	Stem 2	59.377
	CRR073299	Stem 3	87.536
	CRR073300	Leaf 1	55.015
	CRR073301	Leaf 2	48.037
	CRR073302	Leaf 3	87.198
	CRR073303	Juvenile bud 1	53.536
	CRR073304	Juvenile bud 2	31.352
	CRR073305	Juvenile bud 3	52.939
	CRR073306	Third green 1	2.036
	CRR073307	Third green 2	1.408
	CRR073308	Third green 3	3.183
	CRR073309	Second white 1	0.147
	CRR073310	Second white 2	0.381
	CRR073311	Second white 3	0.201
	CRR073312	Silver flowering 1	0.716
	CRR073313	Silver flowering 2	0.885
	CRR073314	Silver flowering 3	1.345
	CRR073315	Gold flowering 1	20.093
	CRR073316	Gold flowering 2	22.670
	CRR073317	Gold flowering 3	33.952
	CRR073318	Tawny withering 1	105.404
	CRR073319	Tawny withering 2	100.435
	CRR073320	Tawny withering 3	91.183