Gene detail

Detail information of GWHGAAZE009513

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_003634834.2	PREDICTED: linoleate 9S-lipoxygenase 6 [Vitis vinifera]
Swissprot	tr\|Q9LUW0\|LOX5_ARATH	Linoleate 9S-lipoxygenase 5, chloroplastic
trEMBL	tr\|A0A067LDG2\|A0A067LDG2_JATCU	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}
TAIR10	AT3G22400.1	PLAT/LH2 domain-containing lipoxygenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	111500117	111505255	+
GWHAAZE00000002	mRNA	111500117	111505255	+
GWHAAZE00000002	exon	111500117	111500176	+
GWHAAZE00000002	exon	111500209	111500684	+
GWHAAZE00000002	exon	111500866	111501146	+
GWHAAZE00000002	exon	111501230	111501470	+
GWHAAZE00000002	exon	111501590	111501931	+
GWHAAZE00000002	exon	111502033	111502118	+
GWHAAZE00000002	exon	111502311	111502400	+
GWHAAZE00000002	exon	111502638	111502942	+
GWHAAZE00000002	exon	111503782	111504045	+
GWHAAZE00000002	exon	111504487	111505255	+
GWHAAZE00000002	five_prime_UTR	111500117	111500176	+
GWHAAZE00000002	five_prime_UTR	111500209	111500470	+
GWHAAZE00000002	CDS	111500471	111500684	+
GWHAAZE00000002	CDS	111500866	111501146	+
GWHAAZE00000002	CDS	111501230	111501470	+
GWHAAZE00000002	CDS	111501590	111501931	+
GWHAAZE00000002	CDS	111502033	111502118	+
GWHAAZE00000002	CDS	111502311	111502400	+
GWHAAZE00000002	CDS	111502638	111502942	+
GWHAAZE00000002	CDS	111503782	111504045	+
GWHAAZE00000002	CDS	111504487	111505255	+

Transcript Sequence
>GWHTAAZE009525 ACAACTAAAATTATTAATTTATAATTCCTAATAAGCACAGAAATTCAAACCAAAAATCAAGATTCTTTGTACCAAAAAATAAAAGTAGAAACCCAGATGGCAAAGCAATGGATCTAAGAGACCAACAGGTACACACATTCTTTACTTTTCCAGTTTACATTTCACTAATGTTTCATACTTCTCTTTCAACACAAGCATTCTTCACCCCCACAGAAGCATCACAATTTAATAAGGTAAAGCCATTCATTCAAACATATAATTAGCATGAATCTGAAAGGTCCATCAAAACCAGTAAGGTGGAAAAGAAACACAAAAGATAAAAATGGAATGCAGAGGCGGAGGCGGCTTGTGTTCGACCATCCAAAATTGTTTGAATGTTTTCCAAGGCAAAGTTACAGCTAATGAGGGCTTTAGTTTTAACTATACTGAAAAAAGCTTCATAACAGCAGAGATCGTCATTCAAGGGAGCAAAAAACACTCCGATCCCGGAAAATCAGCATCCCTTTGGCTATATAGTGGCACCAAAATCGACCCAAGCACTGGAAAAGGGCAGGTAAGTGACAAAGTACACCTCAATCATGGAAAGAGCAACAAGAAAAATGGGATTAAAATGACCGCATACAAGATAAGGTTTAATGTTGATCCGGGATTTGGAATCCCCGGAGCTTTTGTCATAAGAAACCAGCATAAGCATGAGTTTTTTCTTCAATATGTAACTCTACAAGTCAACATTAATCGTAAAATTCAATTCAATTGCAACTCCTGGATCTATCCAACCCACAAAACAAGCATGGATCGTCTTTTCTTTTCAAACACTTGTTATCTTCCGAACCAAACACCGGACACTTTGGTGGGACTGAGGAAAGAAGAACTTTCTAGCTTGAGAGGAAACGGAACCGGGGAGAGAAAAGAATGGGATAGAATCTATGACTACGATTTCTATAGTGATCTTGGCAATCCTGATAAAGGTCCGGAACACACAAGGCCTGTCTTGGGCGGGTCAGACTTGTATCCATATCCCCGTAGGGGAAGAACAGGTCGGCCTCCTAGCAACAAAGATCATCTAACTGAGAGCCGGCCAGCAGCTATCAACTTAGACATCTATGTTCCTCGAGATGAACGGCTCAGCCCCAAAAGACTATCAGAGTTCATATCAAATGCTATCAAGGCTATTGCTCATTTTGTTCTCCCTGAAGCTAAATTGTTATTCCAAGATGATTCTGGTCATTTCAAGTCGTTCAATGAAATACGACATTTGTTTACGGCCAACAGAAGCCAAGTAAAGGAGGGACGATTTGTAAAGAAAGTGAAGGATTTAGTACCTGAGGAGCTATTCAAAATGATTCAGCATGCAAGTCTCAAGAACCCAGTAAAATTTCCGTTACCCCAAATTATAGCAGAGAACGAATTTGCATGGAAGGATGACGTGGAATTTGGACGCCAACTGCTAGCAGGAATAAATCCAACTGTGATTAAAGTTTTGCAGAAATTTCCACCAGAAAGTGAAAATGGAGTGAGGAGTTCAATAAAGCAATCAGACATACAACAGAACCTCGATGGGCTGACTTTGGTACAGGCAATGAAACAATGGAGAATCTTCATCTTGGACCACCATGACTACCTCATGCCGTTTCTAAACAGAATAAACACCAAGGGTGTATGTGCTTATGCGTCCCGAACTCTCCTGTTCTTGAGGAATGATGCTACGCTGAAGCCAGTGGCGATAGAACTGAGCTTGCCTACAACCTCCTCCAATGACGAGGAGGAGATCAACAGGGTGTTTCTTCCAGCAACTCAGGGTACTGAGGCGGCACTATGGCTTTCAGCTAAAGCTCATGTAGCAGTGAACGACTCTGGCTACCATCAATTAATCACTCATTGGTTAAAAACTCACGCGATAGTTGAGCCATTCATCATTGCCACCAGAAGGCAGCTAAGTATTATGCACCCAATCCACCGCCTATTGGATCCTCATCTCAAGGATACGATGCATGTAAACGCACTAGCCCGGAGTATTCTCATAAACTCTGGTGGAATCCTAGAGAAGACATTATTTACCAATGAAATCTCAATGGAGTTGTCTTCTGCACTCTATAAAGATTGGAGATTTGATGAACAAGCTCTCCCTGCCGATCTACTCAAAAGACGCATGGCACTAAAGGACCCAGATATGCCAGCCGGGGTTCAACTACTGTTTGAAGACTATCCCTATGGAGCAGATGGACTCGAGATATGGGCAGCCATTCAGAAATGGGTAACAAACTTCTGCTCACTCTTCTACACGAATGACGATTCTGTAAAGTTCGATAACGAAATCCAAGCATGGTGGTCAGAGATTCGAAATGTTGGCCACGGTGATAAGTGCAATGAAACGTGGTGGTATTCAATGACAACTCTCTCTGACCTCATAAAGGCTCTGACAACTCTCATATGGATTGTGTCAGCTTTTCATGCATCTGTGAACTATGGGCAATACGGATATGCGGGTTACCCACCCAATAGACCTACATTATGTCGAAAATTTATTCCAGAAGAAGGGACACTAGAGTTTGCTGATTTCCTCAAGGATCCAGATAAATACTATCTCGAGATGTTGCCTAAAAGGTTTGAGATGACCCTTAGTATAGCACTGATAGAGGTACTATCAACGCACACGTCAGATGAAGTATACTTGGGCCAAAATCTGTCACCAGGATGGACAGATAATGAACAGATTCATCAGATGTTTAAGCAGTTTGGCAATGAGCTCAAAGAAGTGGAGAAAAGAATAGTGGAGAGGAATCGAGATCGCAATCTTAAGAACAGATGGGGCCCTGCTAAGATTGCGTACAGACTTTTGTACCCTGATATATCGGATGATGGATTTAGAGGAGGTATTACAGGAAAGGGGCTCCCAAACAGCATATCTGTCTAA

Network for GWHGAAZE009513

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01477.24	PLAT	73	162	6.90E-09
PF00305.20	Lipoxygenase	176	841	8.00E-286

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00454	LOX2S	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Linoleic acid metabolism	map00591
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005515	molecular_function	protein binding
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	molecular_function	metal ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.057
	SRR3591706	second leaf	5.551
	SRR3591707	mature leaf	2.652
	SRR3591708	Shoot apex	5.947
	SRR3591709	Stem	20.926
	SRR3591710	White floral bud	5.374
	SRR3591711	White flower	6.223
	SRR3591712	Green floral bud	7.424
	SRR3591713	Yellow flower	1.818
SRP173429	SRR8316895	Juvenile bud stage	5.585
	SRR8316896	Juvenile bud stage	8.522
	SRR8316897	Juvenile bud stage	2.939
	SRR8316894	Third green stage	4.057
	SRR8316900	Third green stage	6.824
	SRR8316901	Third green stage	9.401
	SRR8316898	Complete white stage	0.352
	SRR8316899	Complete white stage	3.213
	SRR8316903	Complete white stage	1.433
	SRR8316902	Silver flowering stage	1.356
	SRR8316904	Silver flowering stage	0.876
	SRR8316905	Silver flowering stage	0.331
	SRR8316906	Gold flowering stage	1.710
	SRR8316907	Gold flowering stage	2.180
	SRR8316908	Gold flowering stage	1.470
SRP132670	SRR6706286	Control	2.938
	SRR6706287	Light intensity 50%	3.611
	SRR6706288	Light intensity 20%	3.097
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.411
	CNS0095593	Slightly white alabastrum(diploid) 2	8.461
	CNS0095594	Slightly white alabastrum(diploid) 3	7.045
	CNS0095595	Whole white alabastrum(diploid) 2	6.265
	CNS0095596	Whole white alabastrum(diploid) 3	3.512
	CNS0095597	Whole white alabastrum(diploid) 4	3.035
	CNS0095598	Silvery flower (diploied) 1	2.725
	CNS0095599	Silvery flower (diploied) 2	1.990
	CNS0095600	Silvery flower (diploied) 3	1.157
	CNS0095601	Golden flower (diploid) 1	2.181
	CNS0095602	Golden flower (diploid) 2	1.508
	CNS0095603	Golden flower (diploid) 3	1.652
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.167
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.354
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.484
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.919
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.690
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.482
	CNS0095610	Silvery flower (diploied) 1	3.856
	CNS0095611	Silvery flower (diploied) 2	1.074
	CNS0095612	Silvery flower (diploied) 3	0.774
	CNS0095613	Golden flower (tetraploid) 1	3.139
	CNS0095614	Golden flower (tetraploid) 2	1.958
	CNS0095615	Golden flower (tetraploid) 3	0.951
CRA001975	CRR073297	Stem 1	5.691
	CRR073298	Stem 2	5.356
	CRR073299	Stem 3	1.192
	CRR073300	Leaf 1	6.776
	CRR073301	Leaf 2	5.782
	CRR073302	Leaf 3	2.872
	CRR073303	Juvenile bud 1	0.796
	CRR073304	Juvenile bud 2	0.352
	CRR073305	Juvenile bud 3	1.328
	CRR073306	Third green 1	0.131
	CRR073307	Third green 2	0.106
	CRR073308	Third green 3	0.266
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.016
	CRR073312	Silver flowering 1	0.049
	CRR073313	Silver flowering 2	0.018
	CRR073314	Silver flowering 3	0.035
	CRR073315	Gold flowering 1	0.638
	CRR073316	Gold flowering 2	0.698
	CRR073317	Gold flowering 3	0.997
	CRR073318	Tawny withering 1	7.221
	CRR073319	Tawny withering 2	5.669
	CRR073320	Tawny withering 3	6.006