Detail information of GWHGAAZE009589


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002268160.20PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g48740 [Vitis vinifera]
Swissprottr|C0LGV0|Y5487_ARATH0Probable LRR receptor-like serine/threonine-protein kinase At5g48740 (Precursor)
trEMBLtr|D7U3K7|D7U3K7_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI37326.3}
TAIR10AT5G48740.10Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene113056811113062991-
GWHAAZE00000002mRNA113056811113062991-
GWHAAZE00000002exon113056811113057032-
GWHAAZE00000002exon113057120113057252-
GWHAAZE00000002exon113057584113057773-
GWHAAZE00000002exon113059161113059229-
GWHAAZE00000002exon113059329113059455-
GWHAAZE00000002exon113059841113060046-
GWHAAZE00000002exon113060128113060366-
GWHAAZE00000002exon113060439113060507-
GWHAAZE00000002exon113060720113060791-
GWHAAZE00000002exon113060894113060962-
GWHAAZE00000002exon113061053113061121-
GWHAAZE00000002exon113061228113061296-
GWHAAZE00000002exon113061523113061640-
GWHAAZE00000002exon113061743113062194-
GWHAAZE00000002exon113062363113062991-
GWHAAZE00000002CDS113062363113062991-
GWHAAZE00000002CDS113061743113062194-
GWHAAZE00000002CDS113061523113061640-
GWHAAZE00000002CDS113061228113061296-
GWHAAZE00000002CDS113061053113061121-
GWHAAZE00000002CDS113060894113060962-
GWHAAZE00000002CDS113060720113060791-
GWHAAZE00000002CDS113060439113060507-
GWHAAZE00000002CDS113060128113060366-
GWHAAZE00000002CDS113059841113060046-
GWHAAZE00000002CDS113059329113059455-
GWHAAZE00000002CDS113059161113059229-
GWHAAZE00000002CDS113057584113057773-
GWHAAZE00000002CDS113057120113057252-
GWHAAZE00000002CDS113056811113057032-
Transcript Sequence

Network for GWHGAAZE009589

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12819.8Malectin_like343496.70E-56
PF13855.7LRR_84425005.80E-09
PF00069.26Pkinase6238901.30E-47
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_LRR-I-1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.967
SRR3591706second leaf1.688
SRR3591707mature leaf0.285
SRR3591708Shoot apex1.957
SRR3591709Stem9.546
SRR3591710White floral bud0.030
SRR3591711White flower0.067
SRR3591712Green floral bud0.362
SRR3591713Yellow flower0.040
SRP173429 SRR8316895Juvenile bud stage 0.822
SRR8316896Juvenile bud stage 1.232
SRR8316897Juvenile bud stage 0.518
SRR8316894Third green stage 0.638
SRR8316900Third green stage 0.270
SRR8316901Third green stage 0.506
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.363
SRR8316903Complete white stage 0.013
SRR8316902Silver flowering stage0.013
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.103
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.144
SRR6706287Light intensity 50%0.125
SRR6706288Light intensity 20%0.048
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.309
CNS0095593Slightly white alabastrum(diploid) 21.378
CNS0095594Slightly white alabastrum(diploid) 30.666
CNS0095595Whole white alabastrum(diploid) 20.278
CNS0095596Whole white alabastrum(diploid) 30.194
CNS0095597Whole white alabastrum(diploid) 40.164
CNS0095598Silvery flower (diploied) 10.084
CNS0095599Silvery flower (diploied) 20.124
CNS0095600Silvery flower (diploied) 30.060
CNS0095601Golden flower (diploid) 10.285
CNS0095602Golden flower (diploid) 20.027
CNS0095603Golden flower (diploid) 30.074
CNS0095604Slightly white alabastrum(tetraploid) 10.517
CNS0095605Slightly white alabastrum(tetraploid) 20.335
CNS0095606Slightly white alabastrum(tetraploid) 32.425
CNS0095607Whole white alabastrum(tetraploid) 10.176
CNS0095608Whole white alabastrum(tetraploid) 20.062
CNS0095609Whole white alabastrum(tetraploid) 30.204
CNS0095610Silvery flower (diploied) 10.018
CNS0095611Silvery flower (diploied) 20.047
CNS0095612Silvery flower (diploied) 30.088
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.024
CRA001975CRR073297Stem 10.801
CRR073298Stem 20.899
CRR073299Stem 31.501
CRR073300Leaf 10.136
CRR073301Leaf 20.371
CRR073302Leaf 30.435
CRR073303Juvenile bud 10.112
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.010
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.016
CRR073315Gold flowering 10.101
CRR073316Gold flowering 20.309
CRR073317Gold flowering 30.287
CRR073318Tawny withering 115.755
CRR073319Tawny withering 25.117
CRR073320Tawny withering 321.155