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Detail information of GWHGAAZE009589
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_002268160.2
0
PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g48740 [Vitis vinifera]
Swissprot
tr|C0LGV0|Y5487_ARATH
0
Probable LRR receptor-like serine/threonine-protein kinase At5g48740 (Precursor)
trEMBL
tr|D7U3K7|D7U3K7_VITVI
0
Putative uncharacterized protein {ECO:0000313|EMBL:CBI37326.3}
TAIR10
AT5G48740.1
0
Leucine-rich repeat protein kinase family protein
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000002
gene
113056811
113062991
-
GWHAAZE00000002
mRNA
113056811
113062991
-
GWHAAZE00000002
exon
113056811
113057032
-
GWHAAZE00000002
exon
113057120
113057252
-
GWHAAZE00000002
exon
113057584
113057773
-
GWHAAZE00000002
exon
113059161
113059229
-
GWHAAZE00000002
exon
113059329
113059455
-
GWHAAZE00000002
exon
113059841
113060046
-
GWHAAZE00000002
exon
113060128
113060366
-
GWHAAZE00000002
exon
113060439
113060507
-
GWHAAZE00000002
exon
113060720
113060791
-
GWHAAZE00000002
exon
113060894
113060962
-
GWHAAZE00000002
exon
113061053
113061121
-
GWHAAZE00000002
exon
113061228
113061296
-
GWHAAZE00000002
exon
113061523
113061640
-
GWHAAZE00000002
exon
113061743
113062194
-
GWHAAZE00000002
exon
113062363
113062991
-
GWHAAZE00000002
CDS
113062363
113062991
-
GWHAAZE00000002
CDS
113061743
113062194
-
GWHAAZE00000002
CDS
113061523
113061640
-
GWHAAZE00000002
CDS
113061228
113061296
-
GWHAAZE00000002
CDS
113061053
113061121
-
GWHAAZE00000002
CDS
113060894
113060962
-
GWHAAZE00000002
CDS
113060720
113060791
-
GWHAAZE00000002
CDS
113060439
113060507
-
GWHAAZE00000002
CDS
113060128
113060366
-
GWHAAZE00000002
CDS
113059841
113060046
-
GWHAAZE00000002
CDS
113059329
113059455
-
GWHAAZE00000002
CDS
113059161
113059229
-
GWHAAZE00000002
CDS
113057584
113057773
-
GWHAAZE00000002
CDS
113057120
113057252
-
GWHAAZE00000002
CDS
113056811
113057032
-
Transcript Sequence
>GWHTAAZE009601 TTGTACATTGTGATTCCCCAAATTTCTTTGTTTTTCGTAACCTTTAATTTGTACTCAAATGTTTTCTCATATGATGTGAATATAACAGGTTTCTTGAGTATATCTTGCGGTGGAACTACAAATTTTGTAGATTCTTCCAATATTTCATGGGTATCAGATGATACTTACATGACAAGTGGCAACACAACAACCGTTGATTTCATTCAGGGTGCCTCCACTTCTCGATACCCTCTTCGATTCTTTCCTGATTCACAAGGCCGACAGTGTTATAGGCTACCCATAAAGAATGTGTCGTCATTGTTTCTTGTTCGAACCCAATTCATGTATAAAAACTATGATGGACTTGCAAAACCCCCAAGATTCTCTGTTTCTCTTGGAACAGCTATTAGTACCACTGTAAATTTAAGGAATGCTGATCCGTGGACCGAAGAATTTATATGGCCAGTAAATAAAGACATTCTTCCTTTATGTTTGCACTCAATCCCGGATGGAGGGTTCCCCGTTATTTCATCCCTCGAAGTTCGGCCACTTCCCCAAGGAGCTTACAACAGTGGCATTGGAGAGTCCCCCAATATGTTACTTAGAAAGCGATACCGAGTCAATTGTGGTTGCACAAATTGGTCAATGCGGTACCCATTGGATCCGTATGATCGTATATGGGACGGTGATGAAGATTTTGCCCCCTTTCATTTATCAATTAGCTTTTATTCTCAAAGTACCTTCAATTTATCAAGCCTTAAGGAGAGTCCTCCAATCGCCGTTCTTCAAACTGCAAGAGTATTAGCAAGGAGGGAAGGCTTGACATATAACTTCCCTCTAGGTAAGTTAGGAGACTACTACATAGTCCTCTATTTTGCTGGGATTCTCCCCGTGTCCCCATCTTTTGATGTCTTAATCAATGGGGATTTTGTTCAATCAAACTATACTGTAAAGAACTGGGAAGCTACTGCTCTGTTCTTCACTAGGAAGGGGATTAAGAGATTGAACATCACGTTGAACAATATAACCTTCTACCCTTTGATCAATGCAATCGAGGTGTATGAGATTGTTGACATTCCTCAAGAATCTTCCTCAACTACAGTTTCGGCTCTTCAGGTTATTCAACAGTCCACGGGTTTGGATTTCAGATGGCAAGATGATCCGTGCAATCCTACACCATGGGATCATATTGGATGTGAAGGAAGTTCTGTTACTTCATTGGAGCTCTCCGACGTCAACTTGAGGTCAATTAGCCCTACATTTGGTGATCTATTGGATCTTAAAACACTAGATTTGCATAATACATCACTTGCAGGAGAAATACAAAACTTGGGTAGCCTGCAACAACTCGAAAAACTGAACCTGAGTTTCAATCAGCTAACGTCCTTTGGTACTGAATTAGAAGACTTGACTAATCTTCAAGTTTTGGACTTGGCAAATAATAGCTTACAGGGTGTAGTTCCCGAAAGCTTGGGAGAGTTAAAGAACCTACACCTATTGAATTTGGAAAATAATGGATTACAAGGTTTCCTCCCGCAATCTTTGAACAGAGAAAGTCTCAAAGTTAGAACATCAGGGAATTTGTGCCTTTCCTTCTCCATGTCCACATGCAATGATACTTCGGGAAATCCCTCAATTGAAACACCACAAGTCACGATCTTAACCAAAAAGAAGCATAGAGAGCTTAGTCATGTAGCCGTAATAATAATCGGTGCAGTTGGAGGACTCGTTTTGGTCCTTTTGATTATTTCTCTTTCAATGTTCTTTTACACAAAGAGAAAGAGAACCGATATCATACATACAGCAAGACCAAGAATGGAAATGTGGAATTGGAATACGGCGAAAGTATTCTCTTATAAGGAAATAAAAGCAGCTACAAACAACTTGAAGGAGGTTATTGGCCGTGGTAGTTTTGGATCTGTTTACCTTGGAAAGCTTCATGATGGAAAACTAGTAGCTGTGAAAGTGCGGTTCGATAAAACTCAACTTGGGGCCGATTCTTTTATCAACGAGGTGAATCTTTTGTCACAAATTCGTCACCAAAATCTTGTCTCTTTGGAAGGATTTTGTCATGAATCAAAGCAGCAAATACTAGTTTACGAGTATTTACCTGGTGGATCATTGGCTGATAACCTTTATGGTGCAAACAGCAAGAGAGTGACATTAAGTTGGGTCCGCAGACTGAAAATTGCCGTTGATGCTGCAAAAGGGTTGGACTACTTGCATAATGGGACTGACCCACGAATAATACACCGCGATGTGAAGTCCAATAATATACTTTTGGACGCGGAGATGAATGCTAAGGTCAGTGACTTCGGCCTCTCAAAGCAAGTCACCCAAGCAGACGCGACCCATGTCACTACTGTTGTCAAGGGTACCGCTGGTTATCTCGATCCTGAATATTATTCCACTCAACAATTAACTGAGAAAAGTGACATCTATAGTTTTGGGGTCGTTCTTTTGGAGCTCATTTGCGGTCGAGAGCCACTAAGTCACTCTGGAACTCCAGATTCCATCAATTTGGTTTTGTGGGCCAAGCCATACTTGCAGGCGGGGGCTTATGAGATAGTAGTGGATGAGAGCATAAAGGGGAGTTTTGAAGAGGAGAGCATGAAAAAAGCAGCTTTAATTGCTTCAAGGTCAGTAGAGAGAGAAGCGACGAGGAGGCCAACTATTGCAGAGGTATTGGCAGAGCTCAAAGAAGCCTACAGCATCCAACTTGCATATCTTGCTTCTACTGGAATTCTGAATTGA
Network for GWHGAAZE009589
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF12819.8
Malectin_like
34
349
6.70E-56
PF13855.7
LRR_8
442
500
5.80E-09
PF00069.26
Pkinase
623
890
1.30E-47
Protein Sequence
>GWHPAAZE009595 LYIVIPQISLFFVTFNLYSNVFSYDVNITGFLSISCGGTTNFVDSSNISWVSDDTYMTSGNTTTVDFIQGASTSRYPLRFFPDSQGRQCYRLPIKNVSSLFLVRTQFMYKNYDGLAKPPRFSVSLGTAISTTVNLRNADPWTEEFIWPVNKDILPLCLHSIPDGGFPVISSLEVRPLPQGAYNSGIGESPNMLLRKRYRVNCGCTNWSMRYPLDPYDRIWDGDEDFAPFHLSISFYSQSTFNLSSLKESPPIAVLQTARVLARREGLTYNFPLGKLGDYYIVLYFAGILPVSPSFDVLINGDFVQSNYTVKNWEATALFFTRKGIKRLNITLNNITFYPLINAIEVYEIVDIPQESSSTTVSALQVIQQSTGLDFRWQDDPCNPTPWDHIGCEGSSVTSLELSDVNLRSISPTFGDLLDLKTLDLHNTSLAGEIQNLGSLQQLEKLNLSFNQLTSFGTELEDLTNLQVLDLANNSLQGVVPESLGELKNLHLLNLENNGLQGFLPQSLNRESLKVRTSGNLCLSFSMSTCNDTSGNPSIETPQVTILTKKKHRELSHVAVIIIGAVGGLVLVLLIISLSMFFYTKRKRTDIIHTARPRMEMWNWNTAKVFSYKEIKAATNNLKEVIGRGSFGSVYLGKLHDGKLVAVKVRFDKTQLGADSFINEVNLLSQIRHQNLVSLEGFCHESKQQILVYEYLPGGSLADNLYGANSKRVTLSWVRRLKIAVDAAKGLDYLHNGTDPRIIHRDVKSNNILLDAEMNAKVSDFGLSKQVTQADATHVTTVVKGTAGYLDPEYYSTQQLTEKSDIYSFGVVLLELICGREPLSHSGTPDSINLVLWAKPYLQAGAYEIVVDESIKGSFEEESMKKAALIASRSVEREATRRPTIAEVLAELKEAYSIQLAYLASTGILN
Gene family
Gene family
subfamily
Protein Kinases Family
RLK-Pelle_LRR-I-1
KEGG pathway
KO
Enzyme
pathway
mapID
--
--
--
--
Gene Ontology
GO term
Ontology
Name
GO:0006468
biological_process
protein phosphorylation
GO:0004672
molecular_function
protein kinase activity
GO:0005515
molecular_function
protein binding
GO:0005524
molecular_function
ATP binding
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
17.967
SRR3591706
second leaf
1.688
SRR3591707
mature leaf
0.285
SRR3591708
Shoot apex
1.957
SRR3591709
Stem
9.546
SRR3591710
White floral bud
0.030
SRR3591711
White flower
0.067
SRR3591712
Green floral bud
0.362
SRR3591713
Yellow flower
0.040
SRP173429
SRR8316895
Juvenile bud stage
0.822
SRR8316896
Juvenile bud stage
1.232
SRR8316897
Juvenile bud stage
0.518
SRR8316894
Third green stage
0.638
SRR8316900
Third green stage
0.270
SRR8316901
Third green stage
0.506
SRR8316898
Complete white stage
0.000
SRR8316899
Complete white stage
0.363
SRR8316903
Complete white stage
0.013
SRR8316902
Silver flowering stage
0.013
SRR8316904
Silver flowering stage
0.000
SRR8316905
Silver flowering stage
0.000
SRR8316906
Gold flowering stage
0.000
SRR8316907
Gold flowering stage
0.103
SRR8316908
Gold flowering stage
0.000
SRP132670
SRR6706286
Control
0.144
SRR6706287
Light intensity 50%
0.125
SRR6706288
Light intensity 20%
0.048
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
1.309
CNS0095593
Slightly white alabastrum(diploid) 2
1.378
CNS0095594
Slightly white alabastrum(diploid) 3
0.666
CNS0095595
Whole white alabastrum(diploid) 2
0.278
CNS0095596
Whole white alabastrum(diploid) 3
0.194
CNS0095597
Whole white alabastrum(diploid) 4
0.164
CNS0095598
Silvery flower (diploied) 1
0.084
CNS0095599
Silvery flower (diploied) 2
0.124
CNS0095600
Silvery flower (diploied) 3
0.060
CNS0095601
Golden flower (diploid) 1
0.285
CNS0095602
Golden flower (diploid) 2
0.027
CNS0095603
Golden flower (diploid) 3
0.074
CNS0095604
Slightly white alabastrum(tetraploid) 1
0.517
CNS0095605
Slightly white alabastrum(tetraploid) 2
0.335
CNS0095606
Slightly white alabastrum(tetraploid) 3
2.425
CNS0095607
Whole white alabastrum(tetraploid) 1
0.176
CNS0095608
Whole white alabastrum(tetraploid) 2
0.062
CNS0095609
Whole white alabastrum(tetraploid) 3
0.204
CNS0095610
Silvery flower (diploied) 1
0.018
CNS0095611
Silvery flower (diploied) 2
0.047
CNS0095612
Silvery flower (diploied) 3
0.088
CNS0095613
Golden flower (tetraploid) 1
0.000
CNS0095614
Golden flower (tetraploid) 2
0.000
CNS0095615
Golden flower (tetraploid) 3
0.024
CRA001975
CRR073297
Stem 1
0.801
CRR073298
Stem 2
0.899
CRR073299
Stem 3
1.501
CRR073300
Leaf 1
0.136
CRR073301
Leaf 2
0.371
CRR073302
Leaf 3
0.435
CRR073303
Juvenile bud 1
0.112
CRR073304
Juvenile bud 2
0.000
CRR073305
Juvenile bud 3
0.010
CRR073306
Third green 1
0.000
CRR073307
Third green 2
0.000
CRR073308
Third green 3
0.000
CRR073309
Second white 1
0.000
CRR073310
Second white 2
0.000
CRR073311
Second white 3
0.000
CRR073312
Silver flowering 1
0.000
CRR073313
Silver flowering 2
0.000
CRR073314
Silver flowering 3
0.016
CRR073315
Gold flowering 1
0.101
CRR073316
Gold flowering 2
0.309
CRR073317
Gold flowering 3
0.287
CRR073318
Tawny withering 1
15.755
CRR073319
Tawny withering 2
5.117
CRR073320
Tawny withering 3
21.155