Gene detail

Detail information of GWHGAAZE009669

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001237321.1	9.3265E-110	uncharacterized protein LOC100306343 [Glycine max]
Swissprot	tr\|Q941D5\|VPS2C_ARATH	2E-106	Vacuolar protein sorting-associated protein 2 homolog 3
trEMBL	tr\|C6SYZ9\|C6SYZ9_SOYBN	3E-110	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU14472.1}
TAIR10	AT1G03950.1	1E-64	vacuolar protein sorting-associated protein 2.3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	114754361	114757453	+
GWHAAZE00000002	mRNA	114754361	114757453	+
GWHAAZE00000002	exon	114754361	114754426	+
GWHAAZE00000002	exon	114754831	114754881	+
GWHAAZE00000002	exon	114755019	114755123	+
GWHAAZE00000002	exon	114755239	114755310	+
GWHAAZE00000002	exon	114755517	114755588	+
GWHAAZE00000002	exon	114755897	114755977	+
GWHAAZE00000002	exon	114756529	114756591	+
GWHAAZE00000002	exon	114756667	114756722	+
GWHAAZE00000002	exon	114757402	114757453	+
GWHAAZE00000002	CDS	114754361	114754426	+
GWHAAZE00000002	CDS	114754831	114754881	+
GWHAAZE00000002	CDS	114755019	114755123	+
GWHAAZE00000002	CDS	114755239	114755310	+
GWHAAZE00000002	CDS	114755517	114755588	+
GWHAAZE00000002	CDS	114755897	114755977	+
GWHAAZE00000002	CDS	114756529	114756591	+
GWHAAZE00000002	CDS	114756667	114756722	+
GWHAAZE00000002	CDS	114757402	114757453	+

Transcript Sequence
>GWHTAAZE009681 ATGTTATTGATGGTCTTTTACATTGATTCAGGTGTAGAGAGGGAGATCACGGCATTGCAGTCAGAAGAAAAGAAGCTGGTTGCTGAGATAAAGAGAACTGCTAAGACGGGAAATGAGGGAGCAACTAAAATTTTAGCACGTCAGTTAGTTAGACTTCGACAACAAATAGCCAACTTGCAAGCCAGTCGAGCTCAAATGAGAGGTATAGCCACTCACACCCAGGCAATGTCTGCTCACTCGTCTGTAGCTGTTGGCATGAAAGGTGCCAGCAAGGCAATGGCAGCTATGAACGAGCAAATGGAACCAGCAAAGCAGGCACAAGTGATAAGAGAATTCCAGAAGCAATCAGCACAAATGGATATGACTACTGAAATGATGTCAGAAGCCATAGATGATGCATTAGATAATGATGAGGCTGAAGAGGAAACTGAAGAGTTAACAAACCAGGTGCTAGATGAAATTGGCGTTGATGTTGCCTCTCAGGTTGCTACTTATAACTTTTCTAGTTTTTTGTCGGCTGCCCCCAAAGGGAAAATTGCTGGAAAGAATACTGAGAATGCTGGCAGCTCTGGCATTGATGAACTGGAGAAGAGGTTGGCAGCCCTTAGAAATCCTTGA

Network for GWHGAAZE009669

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03357.22	Snf7	12	166	3.50E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12192	CHMP2B	Endocytosis	map04144
K12192	CHMP2B	Necroptosis	map04217

Gene Ontology

GO term	Ontology	Name
GO:0007034	biological_process	vacuolar transport

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	50.267
	SRR3591706	second leaf	31.020
	SRR3591707	mature leaf	65.214
	SRR3591708	Shoot apex	47.651
	SRR3591709	Stem	49.324
	SRR3591710	White floral bud	33.589
	SRR3591711	White flower	42.513
	SRR3591712	Green floral bud	35.403
	SRR3591713	Yellow flower	46.770
SRP173429	SRR8316895	Juvenile bud stage	35.598
	SRR8316896	Juvenile bud stage	54.006
	SRR8316897	Juvenile bud stage	35.034
	SRR8316894	Third green stage	12.517
	SRR8316900	Third green stage	33.501
	SRR8316901	Third green stage	37.999
	SRR8316898	Complete white stage	13.979
	SRR8316899	Complete white stage	53.141
	SRR8316903	Complete white stage	19.784
	SRR8316902	Silver flowering stage	21.175
	SRR8316904	Silver flowering stage	20.896
	SRR8316905	Silver flowering stage	10.871
	SRR8316906	Gold flowering stage	41.325
	SRR8316907	Gold flowering stage	39.156
	SRR8316908	Gold flowering stage	41.223
SRP132670	SRR6706286	Control	47.306
	SRR6706287	Light intensity 50%	44.196
	SRR6706288	Light intensity 20%	44.578
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	47.326
	CNS0095593	Slightly white alabastrum(diploid) 2	48.900
	CNS0095594	Slightly white alabastrum(diploid) 3	53.652
	CNS0095595	Whole white alabastrum(diploid) 2	37.712
	CNS0095596	Whole white alabastrum(diploid) 3	23.947
	CNS0095597	Whole white alabastrum(diploid) 4	30.452
	CNS0095598	Silvery flower (diploied) 1	42.755
	CNS0095599	Silvery flower (diploied) 2	52.782
	CNS0095600	Silvery flower (diploied) 3	34.184
	CNS0095601	Golden flower (diploid) 1	59.712
	CNS0095602	Golden flower (diploid) 2	42.847
	CNS0095603	Golden flower (diploid) 3	37.402
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.066
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.903
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.321
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.108
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.169
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.583
	CNS0095610	Silvery flower (diploied) 1	28.920
	CNS0095611	Silvery flower (diploied) 2	29.283
	CNS0095612	Silvery flower (diploied) 3	26.540
	CNS0095613	Golden flower (tetraploid) 1	25.362
	CNS0095614	Golden flower (tetraploid) 2	29.861
	CNS0095615	Golden flower (tetraploid) 3	26.938
CRA001975	CRR073297	Stem 1	37.429
	CRR073298	Stem 2	33.632
	CRR073299	Stem 3	37.914
	CRR073300	Leaf 1	37.054
	CRR073301	Leaf 2	36.636
	CRR073302	Leaf 3	26.721
	CRR073303	Juvenile bud 1	25.392
	CRR073304	Juvenile bud 2	20.702
	CRR073305	Juvenile bud 3	20.238
	CRR073306	Third green 1	11.559
	CRR073307	Third green 2	11.664
	CRR073308	Third green 3	12.693
	CRR073309	Second white 1	13.425
	CRR073310	Second white 2	13.172
	CRR073311	Second white 3	8.180
	CRR073312	Silver flowering 1	9.137
	CRR073313	Silver flowering 2	7.615
	CRR073314	Silver flowering 3	10.239
	CRR073315	Gold flowering 1	25.463
	CRR073316	Gold flowering 2	39.368
	CRR073317	Gold flowering 3	23.988
	CRR073318	Tawny withering 1	33.056
	CRR073319	Tawny withering 2	41.745
	CRR073320	Tawny withering 3	27.377