Gene detail

Detail information of GWHGAAZE009690

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009610278.1	4.85939E-49	PREDICTED: ethylene-responsive transcription factor ERF098-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9LTC5\|ERF98_ARATH	5E-44	Ethylene-responsive transcription factor ERF098
trEMBL	tr\|B9H8L0\|B9H8L0_POPTR	7E-47	Uncharacterized protein {ECO:0000313\|EMBL:EEE94636.1}
TAIR10	AT3G23230.1	5E-19	Integrase-type DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	115278455	115278871	+
GWHAAZE00000002	mRNA	115278455	115278871	+
GWHAAZE00000002	exon	115278455	115278871	+
GWHAAZE00000002	CDS	115278455	115278871	+

Transcript Sequence
>GWHTAAZE009702 ATGGAAGCACAAAATGAAAACGGCAATAAAGCATTGGAAAAAGGAAGAAGAGAGAACAAGTACAGGGGGATACGGAGGCGGCCTTGGGGCAAGTTTGCGGCCGAGATACGCGATCCGACAAGAAACGGGGCTCGCCTGTGGCTCGGTACGTTTGATACTGAGGAAGAAGCGGCCCGTGCGTATGACCGTGCCGCATATGCACTGAGGGGTCACCAAGCTATTCTCAACTTCCCTAATGATGGACATTACAACACTAATAATTCTACAGCTCCCACAATTTCTTCTTCTTCTTCTTCACCTTCATCATCATCAATAAATAGAAGAGAAGAGCAGCAAGTTATTGAGTTTGAGTATTTAGATGATAAGTTGTTGGAGGATCTTCTCGACACACAAACGCCCAAACAAGAACATTTTTAA

Network for GWHGAAZE009690

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	20	71	2.80E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.137
	SRR3591707	mature leaf	0.116
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.366
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.342
	SRR3591712	Green floral bud	0.197
	SRR3591713	Yellow flower	0.269
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.370
	SRR8316894	Third green stage	0.081
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.085
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.045
	SRR8316905	Silver flowering stage	0.161
	SRR8316906	Gold flowering stage	0.938
	SRR8316907	Gold flowering stage	1.748
	SRR8316908	Gold flowering stage	4.140
SRP132670	SRR6706286	Control	0.266
	SRR6706287	Light intensity 50%	0.457
	SRR6706288	Light intensity 20%	0.134
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.082
	CNS0095593	Slightly white alabastrum(diploid) 2	0.156
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.824
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	1.338
	CNS0095614	Golden flower (tetraploid) 2	0.103
	CNS0095615	Golden flower (tetraploid) 3	0.280
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.184
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.017
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.436
	CRR073313	Silver flowering 2	0.590
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.102
	CRR073318	Tawny withering 1	1.689
	CRR073319	Tawny withering 2	0.686
	CRR073320	Tawny withering 3	0.132