Gene detail

Detail information of GWHGAAZE009864

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007050821.1	7.2884E-166	Mitochondrial transcription termination factor family protein [Theobroma cacao]
trEMBL	tr\|A0A061DY70\|A0A061DY70_THECC	3E-166	Mitochondrial transcription termination factor family protein {ECO:0000313\|EMBL:EOX94978.1}
TAIR10	AT5G07900.1	1E-112	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	118807049	118808296	+
GWHAAZE00000002	mRNA	118807049	118808296	+
GWHAAZE00000002	exon	118807049	118808296	+
GWHAAZE00000002	CDS	118807049	118808296	+

Transcript Sequence
>GWHTAAZE009876 ATGGTTTCTCTTTGCATTTGCAGCAAACTCTTCCCTGTGAAGACGTTTGCCCTACATTTCACACCCCCACTTCTTTTTCTTCCCGACGATCAATTGCAACTGCAATTGTTTTCATCAAAAGTTTCCACATATCAACGCTATTTCTCTTCTAGGTTATACGCAGATAATGCCATCTCTGCAGCACTTTTAGATTCCCCTCTTTCTCAAAATTCTTCCAATCAAGATTCATACACTGTCTCATATCTTGTAAATTCATGTGGTTTATCACCAGAATCCGCCCTCTCTACTTCCGAAAAGGTACAGTTTAAAACCTTAGCAAAACCAGATTCTGTTCTGACCCTCCTCAGGAAATATGAATTCAGCAAAACCCAGATTGCCAAACTTGTTCAAAAACGCCCACTGCTTCTTTTATCCGATTCCCAAAAATCCCTTTTGCCCAAGCTCCAGTTCTTACAATCCATTGGGGTCTCAAATGCTGAGATTGCAAGAACCCTATCAAGAGACCCAACTTTCTTGACAAGAAGTTTGGAGAATCAAATTATTCCTTCTTATAATTTCCTAAAGAGTGTACTCCTATCCAATGAAAAGATTGTTGCCTCTCTGAGGCGCACGTCATGGATTTTTCTTGAAGATCATACCAAGCATCTTGTTCCCAATGTCGCCATTTTGAGGGATTTCGGAGTGAGGGAATCTTGTGTAGTGTTGTTACTAACACATTTCCCTGAAGCTTTAATGCGAAAACCTGAAGAGTTCACAGGTATCGTGATTGAGGTGTCTGAATTGGGGTTTGATCCATTGAAATCAATGTTTGTGTTGGCTATACATGTCCTATCAGGGCAGGGTAATAAATCAATAAGGGATCGGTGTTCTGAGGTATATAAGAAGTGGGGTTGGTCTAATGATGAGATTCGATTGGCATTCAGAAAGCATCCCAATTGCATGATTTTGTCCGAGAATAAAATATCAAGAGCAATGGATTTTTTGGTGAACAAGATGGGCTGGCAGTCTAGCGCGATTGCTAGATGCCCCACAGTTCTGCTCTTCAGCTTGGACAAGAGGATCATCCCTAGGTGTTCTGTTATTCAAGTCTTACAATTGAAGGGTTTGATAAAGAAAGATGTGAGCTTGAGTACACTGTTGTTGCCCGTAGAGGAATACTTCTTAAAGAAGTTTGTGACTAAATATGAGGAGGAAGTACCTGAACTATTGGGTGTTTATGAGGGGAAGGTGGACATTTCAGAACTATAA

Network for GWHGAAZE009864

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	112	264	3.20E-24
PF02536.15	mTERF	289	387	2.40E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.094
	SRR3591706	second leaf	6.093
	SRR3591707	mature leaf	6.653
	SRR3591708	Shoot apex	11.941
	SRR3591709	Stem	6.177
	SRR3591710	White floral bud	6.083
	SRR3591711	White flower	12.760
	SRR3591712	Green floral bud	9.108
	SRR3591713	Yellow flower	4.952
SRP173429	SRR8316895	Juvenile bud stage	2.868
	SRR8316896	Juvenile bud stage	3.727
	SRR8316897	Juvenile bud stage	1.203
	SRR8316894	Third green stage	2.748
	SRR8316900	Third green stage	5.511
	SRR8316901	Third green stage	4.862
	SRR8316898	Complete white stage	1.683
	SRR8316899	Complete white stage	7.090
	SRR8316903	Complete white stage	3.619
	SRR8316902	Silver flowering stage	2.625
	SRR8316904	Silver flowering stage	3.926
	SRR8316905	Silver flowering stage	2.002
	SRR8316906	Gold flowering stage	8.088
	SRR8316907	Gold flowering stage	8.377
	SRR8316908	Gold flowering stage	5.388
SRP132670	SRR6706286	Control	6.096
	SRR6706287	Light intensity 50%	4.743
	SRR6706288	Light intensity 20%	4.666
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.280
	CNS0095593	Slightly white alabastrum(diploid) 2	2.885
	CNS0095594	Slightly white alabastrum(diploid) 3	1.982
	CNS0095595	Whole white alabastrum(diploid) 2	2.773
	CNS0095596	Whole white alabastrum(diploid) 3	1.946
	CNS0095597	Whole white alabastrum(diploid) 4	1.677
	CNS0095598	Silvery flower (diploied) 1	4.039
	CNS0095599	Silvery flower (diploied) 2	1.653
	CNS0095600	Silvery flower (diploied) 3	4.768
	CNS0095601	Golden flower (diploid) 1	4.038
	CNS0095602	Golden flower (diploid) 2	6.126
	CNS0095603	Golden flower (diploid) 3	6.696
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.695
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.354
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.580
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.176
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.150
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.392
	CNS0095610	Silvery flower (diploied) 1	5.020
	CNS0095611	Silvery flower (diploied) 2	6.027
	CNS0095612	Silvery flower (diploied) 3	4.100
	CNS0095613	Golden flower (tetraploid) 1	1.983
	CNS0095614	Golden flower (tetraploid) 2	4.013
	CNS0095615	Golden flower (tetraploid) 3	3.661
CRA001975	CRR073297	Stem 1	7.956
	CRR073298	Stem 2	7.362
	CRR073299	Stem 3	9.651
	CRR073300	Leaf 1	6.055
	CRR073301	Leaf 2	6.313
	CRR073302	Leaf 3	6.394
	CRR073303	Juvenile bud 1	4.919
	CRR073304	Juvenile bud 2	5.061
	CRR073305	Juvenile bud 3	5.813
	CRR073306	Third green 1	0.927
	CRR073307	Third green 2	1.853
	CRR073308	Third green 3	1.405
	CRR073309	Second white 1	2.733
	CRR073310	Second white 2	1.021
	CRR073311	Second white 3	1.220
	CRR073312	Silver flowering 1	0.754
	CRR073313	Silver flowering 2	0.629
	CRR073314	Silver flowering 3	0.246
	CRR073315	Gold flowering 1	9.989
	CRR073316	Gold flowering 2	13.355
	CRR073317	Gold flowering 3	17.698
	CRR073318	Tawny withering 1	7.886
	CRR073319	Tawny withering 2	8.012
	CRR073320	Tawny withering 3	6.198