Detail information of GWHGAAZE009927


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011079617.10PREDICTED: fumarate hydratase 1, mitochondrial [Sesamum indicum]
Swissprottr|Q9FI53|FUM2_ARATH0Fumarate hydratase 2, chloroplastic (Precursor)
trEMBLtr|A0A022S1W8|A0A022S1W8_ERYGU0Uncharacterized protein {ECO:0000313|EMBL:EYU46762.1}
TAIR10AT5G50950.20FUMARASE 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene119954454119965261-
GWHAAZE00000002mRNA119954454119965261-
GWHAAZE00000002exon119965073119965261-
GWHAAZE00000002exon119964648119964765-
GWHAAZE00000002exon119964173119964310-
GWHAAZE00000002exon119963187119963297-
GWHAAZE00000002exon119961477119961560-
GWHAAZE00000002exon119959558119959620-
GWHAAZE00000002exon119959179119959250-
GWHAAZE00000002exon119958841119959091-
GWHAAZE00000002exon119957605119957686-
GWHAAZE00000002exon119957396119957481-
GWHAAZE00000002exon119957211119957277-
GWHAAZE00000002exon119957017119957067-
GWHAAZE00000002exon119955428119955526-
GWHAAZE00000002exon119955288119955321-
GWHAAZE00000002exon119955144119955208-
GWHAAZE00000002exon119954454119954540-
GWHAAZE00000002five_prime_UTR119965073119965261-
GWHAAZE00000002five_prime_UTR119964702119964765-
GWHAAZE00000002CDS119964648119964701-
GWHAAZE00000002CDS119964173119964310-
GWHAAZE00000002CDS119963187119963297-
GWHAAZE00000002CDS119961477119961560-
GWHAAZE00000002CDS119959558119959620-
GWHAAZE00000002CDS119959179119959250-
GWHAAZE00000002CDS119958841119959091-
GWHAAZE00000002CDS119957605119957686-
GWHAAZE00000002CDS119957396119957481-
GWHAAZE00000002CDS119957211119957277-
GWHAAZE00000002CDS119957017119957067-
GWHAAZE00000002CDS119955428119955526-
GWHAAZE00000002CDS119955288119955321-
GWHAAZE00000002CDS119955144119955208-
GWHAAZE00000002CDS119954454119954540-
Transcript Sequence

Network for GWHGAAZE009927

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00206.21Lyase_171903.40E-47
PF00206.21Lyase_12393515.00E-37
PF10415.10FumaraseC_C3884423.20E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01679E4.2.1.2B, fumC, FH Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Citrate cyclemap00020
Pyruvate metabolismmap00620
Carbon fixation pathways in prokaryotesmap00720

Gene Ontology

GO term OntologyName
GO:0006099biological_processtricarboxylic acid cycle
GO:0003824molecular_functioncatalytic activity
GO:0016829molecular_functionlyase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.711
SRR3591706second leaf1.234
SRR3591707mature leaf0.416
SRR3591708Shoot apex1.532
SRR3591709Stem0.236
SRR3591710White floral bud0.450
SRR3591711White flower0.735
SRR3591712Green floral bud0.858
SRR3591713Yellow flower1.010
SRP173429 SRR8316895Juvenile bud stage 2.316
SRR8316896Juvenile bud stage 2.641
SRR8316897Juvenile bud stage 0.993
SRR8316894Third green stage 1.265
SRR8316900Third green stage 2.024
SRR8316901Third green stage 1.787
SRR8316898Complete white stage 0.558
SRR8316899Complete white stage 1.438
SRR8316903Complete white stage 0.323
SRR8316902Silver flowering stage0.087
SRR8316904Silver flowering stage0.240
SRR8316905Silver flowering stage0.042
SRR8316906Gold flowering stage 0.455
SRR8316907Gold flowering stage 0.625
SRR8316908Gold flowering stage 0.377
SRP132670SRR6706286Control0.729
SRR6706287Light intensity 50%1.263
SRR6706288Light intensity 20%1.425
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.891
CNS0095593Slightly white alabastrum(diploid) 23.297
CNS0095594Slightly white alabastrum(diploid) 32.301
CNS0095595Whole white alabastrum(diploid) 21.378
CNS0095596Whole white alabastrum(diploid) 32.868
CNS0095597Whole white alabastrum(diploid) 41.667
CNS0095598Silvery flower (diploied) 11.177
CNS0095599Silvery flower (diploied) 21.233
CNS0095600Silvery flower (diploied) 30.684
CNS0095601Golden flower (diploid) 10.774
CNS0095602Golden flower (diploid) 20.479
CNS0095603Golden flower (diploid) 30.389
CNS0095604Slightly white alabastrum(tetraploid) 13.270
CNS0095605Slightly white alabastrum(tetraploid) 23.650
CNS0095606Slightly white alabastrum(tetraploid) 33.320
CNS0095607Whole white alabastrum(tetraploid) 12.682
CNS0095608Whole white alabastrum(tetraploid) 22.163
CNS0095609Whole white alabastrum(tetraploid) 32.998
CNS0095610Silvery flower (diploied) 10.898
CNS0095611Silvery flower (diploied) 21.218
CNS0095612Silvery flower (diploied) 31.306
CNS0095613Golden flower (tetraploid) 10.823
CNS0095614Golden flower (tetraploid) 20.289
CNS0095615Golden flower (tetraploid) 30.762
CRA001975CRR073297Stem 12.971
CRR073298Stem 22.875
CRR073299Stem 31.897
CRR073300Leaf 13.703
CRR073301Leaf 23.412
CRR073302Leaf 32.153
CRR073303Juvenile bud 12.491
CRR073304Juvenile bud 21.410
CRR073305Juvenile bud 31.085
CRR073306Third green 10.851
CRR073307Third green 20.598
CRR073308Third green 30.702
CRR073309Second white 10.568
CRR073310Second white 20.475
CRR073311Second white 30.368
CRR073312Silver flowering 10.531
CRR073313Silver flowering 20.402
CRR073314Silver flowering 30.652
CRR073315Gold flowering 10.773
CRR073316Gold flowering 21.296
CRR073317Gold flowering 31.268
CRR073318Tawny withering 12.742
CRR073319Tawny withering 22.706
CRR073320Tawny withering 33.272