Gene detail

Detail information of GWHGAAZE010125

Functional Annotation

Database	Orthologs	Annotation
Nr	KEH22159.1	F0F1-type ATP synthase, beta subunit [Medicago truncatula]
Swissprot	tr\|Q95DR6\|ATPB_AGAAF	ATP synthase subunit beta, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_01347}
trEMBL	tr\|A0A072TXD2\|A0A072TXD2_MEDTR	F0F1-type ATP synthase, beta subunit {ECO:0000313\|EMBL:KEH22159.1}
TAIR10	ATCG00480.1	ATP synthase subunit beta

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	123727795	123729456	-
GWHAAZE00000002	mRNA	123727795	123729456	-
GWHAAZE00000002	exon	123728373	123729456	-
GWHAAZE00000002	exon	123727795	123728144	-
GWHAAZE00000002	CDS	123728373	123729456	-
GWHAAZE00000002	CDS	123727795	123728144	-

Transcript Sequence
>GWHTAAZE010137 ATGAGTGCTACAGACGGTCTAACGAGAGGAATGGAAGTGATTGATACGGGAGCTCCTCTAAGTGTTCCGGTCGGTGGAGCGACTCTTGGACGAATTTTCAACGTGCTTGGAGAGCCTGTTGATAATTTAGGTCCTGTAGATACTCGCACAACATCCCCTATTCATAGATCTGCGCCCGCCTTTATAGAGTTAGATACGAAATTATCTATTTTTGAAACCGGAATTAAAGTAGTAGATCTTTTAGCCCCCTATCGCCGTGGAGGAAAAATAGGACTATTCGGGGGGGCTGGAGTGGGCAAAACGGTACTCATTATGGAATTGATTAACAATATTGCCAAAGCTCATGGGGGTGTATCTGTATTTGGGGGAGTAGGTGAACGTACTCGTGAAGGAAATGATCTTTACAAGGAAATGAAAGAATCTGGGGTGATTAATGAACAAAATATTGCAGAATCAAAAGTGGCTCTAGTTTACGGTCAGATGAATGAACCACCGGGAGCCCGTATGAGGGTTGGTTTGACTGCCCTAACTATGGCGGAATATTTCCGAGATGTTAATAAACAAAACGTACTTCTATTTATCGACAATATCTTCCGTTTCGTCCAAGCAGGATCTGAAGTATCTGCTTTATTGGGTAGAATGCCTTCCGCTGTGGGTTATCAACCTACCCTTAGTACCGAAATGGGTACTTTACAAGAAAGAATTACTTCTACCAAGAAGGGGTCCATAACTTCTATTCAAGCGGTTTATGTCCCTGCAGACGATTTGACCGACCCTGCTCCTGCTACGACATTTGCACATTTAGATGCTACTACCGTACTATCAAGAGGATTGGCCGCCAAGGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGTCAACTATGCTACAACCTGGGATCGTTGGTAAGAACCATTATGAAACAGCGCAAAGGGTTAAGCAAACTTTACAACGTTACAAAGAACTTCAGGACATTATAGCTATCCTTGGGTTGGACGAATTATCCGAAGAGGATCGTTTAACCGTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAACCTTTTTTTTGTAGCAGAAAAGTGAAAGAAATCATTTTATCTACTAATAGTGGCCAAATTGGCGTATTACCAAATCACGCCCCTATTGCCACAGCTGTCGATATAGGTATTTTGAGAATACGCCTTAACGACCAATGGGTAACGATGGCTCTGATGGGTGGTTTTGCTAGAATAGGTAATAATGAGATCACTGTTTTAGTAAATAATGCGGAAAAGAGTAGTGACATTGATCCACACGAAGCTCAGCAAACTCTTGAAATAGCGGAAGCTGGTTTGAAAAAAGCTGAAGGAAAAAGACAAACAATTGAGGCAAATCTAGCCCTCCGACGAGCTAGGACACGAGTAGAGACTATCAGGGCGATTTCATAA

Network for GWHGAAZE010125

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00006.26	ATP-synt_ab	74	294	5.10E-64
PF02823.17	ATP-synt_DE_N	358	425	5.60E-19
PF00401.21	ATP-synt_DE	430	472	3.50E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02112	ATPF1B, atpD	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Photosynthesis	map00195

Gene Ontology

GO term	Ontology	Name
GO:0015986	biological_process	ATP synthesis coupled proton transport
GO:0045261	cellular_component	proton-transporting ATP synthase complex, catalytic core F(1)
GO:0046933	molecular_function	proton-transporting ATP synthase activity, rotational mechanism
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.253
	SRR3591706	second leaf	1.635
	SRR3591707	mature leaf	1.744
	SRR3591708	Shoot apex	1.441
	SRR3591709	Stem	0.362
	SRR3591710	White floral bud	0.194
	SRR3591711	White flower	0.235
	SRR3591712	Green floral bud	0.318
	SRR3591713	Yellow flower	0.219
SRP173429	SRR8316895	Juvenile bud stage	10.530
	SRR8316896	Juvenile bud stage	4.534
	SRR8316897	Juvenile bud stage	16.672
	SRR8316894	Third green stage	13.018
	SRR8316900	Third green stage	1.886
	SRR8316901	Third green stage	1.398
	SRR8316898	Complete white stage	4.189
	SRR8316899	Complete white stage	0.545
	SRR8316903	Complete white stage	2.869
	SRR8316902	Silver flowering stage	6.022
	SRR8316904	Silver flowering stage	4.448
	SRR8316905	Silver flowering stage	4.564
	SRR8316906	Gold flowering stage	0.580
	SRR8316907	Gold flowering stage	0.782
	SRR8316908	Gold flowering stage	0.844
SRP132670	SRR6706286	Control	0.231
	SRR6706287	Light intensity 50%	0.661
	SRR6706288	Light intensity 20%	0.488
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.288
	CNS0095593	Slightly white alabastrum(diploid) 2	4.191
	CNS0095594	Slightly white alabastrum(diploid) 3	5.833
	CNS0095595	Whole white alabastrum(diploid) 2	6.517
	CNS0095596	Whole white alabastrum(diploid) 3	4.535
	CNS0095597	Whole white alabastrum(diploid) 4	5.681
	CNS0095598	Silvery flower (diploied) 1	2.885
	CNS0095599	Silvery flower (diploied) 2	3.285
	CNS0095600	Silvery flower (diploied) 3	2.061
	CNS0095601	Golden flower (diploid) 1	3.277
	CNS0095602	Golden flower (diploid) 2	1.413
	CNS0095603	Golden flower (diploid) 3	1.878
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.586
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.445
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.438
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.758
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.438
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.978
	CNS0095610	Silvery flower (diploied) 1	1.228
	CNS0095611	Silvery flower (diploied) 2	1.724
	CNS0095612	Silvery flower (diploied) 3	1.158
	CNS0095613	Golden flower (tetraploid) 1	1.831
	CNS0095614	Golden flower (tetraploid) 2	1.186
	CNS0095615	Golden flower (tetraploid) 3	0.735
CRA001975	CRR073297	Stem 1	10.223
	CRR073298	Stem 2	12.642
	CRR073299	Stem 3	4.261
	CRR073300	Leaf 1	4.944
	CRR073301	Leaf 2	6.029
	CRR073302	Leaf 3	2.486
	CRR073303	Juvenile bud 1	5.622
	CRR073304	Juvenile bud 2	3.622
	CRR073305	Juvenile bud 3	7.771
	CRR073306	Third green 1	4.944
	CRR073307	Third green 2	2.816
	CRR073308	Third green 3	5.087
	CRR073309	Second white 1	4.501
	CRR073310	Second white 2	8.261
	CRR073311	Second white 3	13.270
	CRR073312	Silver flowering 1	11.221
	CRR073313	Silver flowering 2	3.907
	CRR073314	Silver flowering 3	6.036
	CRR073315	Gold flowering 1	62.123
	CRR073316	Gold flowering 2	52.808
	CRR073317	Gold flowering 3	100.574
	CRR073318	Tawny withering 1	4.823
	CRR073319	Tawny withering 2	5.085
	CRR073320	Tawny withering 3	4.389