Gene detail

Detail information of GWHGAAZE010126

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ABA96140.2	0	Ribulose bisphosphate carboxylase large chain precursor, putative [Oryza sativa Japonica Group]
Swissprot	tr\|O63094\|RBL_CAJCA	5E-177	Ribulose bisphosphate carboxylase large chain {ECO:0000255\|HAMAP-Rule:MF_01338} (Precursor)
trEMBL	tr\|Q2QW49\|Q2QW49_ORYSJ	0	Ribulose bisphosphate carboxylase large chain, putative {ECO:0000313\|EMBL:ABA96140.2}
TAIR10	ATCG00490.1	2E-127	ribulose-bisphosphate carboxylases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	123730458	123731885	+
GWHAAZE00000002	mRNA	123730458	123731885	+
GWHAAZE00000002	exon	123730458	123731190	+
GWHAAZE00000002	exon	123731273	123731379	+
GWHAAZE00000002	exon	123731556	123731689	+
GWHAAZE00000002	exon	123731798	123731885	+
GWHAAZE00000002	CDS	123730458	123731190	+
GWHAAZE00000002	CDS	123731273	123731379	+
GWHAAZE00000002	CDS	123731556	123731689	+
GWHAAZE00000002	CDS	123731798	123731885	+

Transcript Sequence
>GWHTAAZE010138 ATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAAGCGGGTGTTAAAGATTACAAATTGACTTATTATACTCCTGACTATGAAACCAAAGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCCGGAGTTCCGCCTGAAGAAGCGGGGGCCGCGGTAGCTGCTGAATCTTCAACCGGTACATGGACAACTGTGTGGACCGATGGACTTACCAGCCTTGATCGTTACAAAGGGCGATGCTACCACATCGAGCCCGTTGCTGGAGAAGAAAATCAATTTATTGCTTATGTAGCTTACCCATTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTTACTTCTATTGTGGGTAATGTATTTGGGTTCAAAGCCCTGCGCGCTCTACGTCTGGAAGATCTGCGAATCCCTGTCTCTTATGTTAAAACTTTCCAAGGCCCGCCTCATGGTATCCAAGTTGAGAGAGATAAATTGAACAAGTACGGCCGCCCCCTGTTGGGATGTACTATTAAACCTAAATTGGGGTTATCTGCTAAAAACTACGGTAGGGCGGTTTATGAATGTCTACGTGGTGGACTTGATTTTACCAAAGATGATGAGAACGTGAACTCCCAACCATTTATGCGTTGGAGAGATCGTTTCTTATTTTGTGCCGAAGCCCTTTTTAAAGCACAAGTTGAAACAGGTGAAATCAAAGGGCATTACTTGAATGCTACTGCAGGGGATTCACTGCAAATACCAGCCTGGCTCACTATTGCCGAGATAATGGCCTACTTCTTCACATCCACCGTGCAATGCATGCAGTTATTGATAGACAGAAGAATCATGGATTGGGTCTCTCTACCGGGTGTTCTGCCCGTGGCTTCGGGGGGTATTCACGTTTGGCATATGCCCGCTTTGACCGAGATCTTTGGAGATGATTCCGTCCTACAGTTCGGCGGAGGAACTTTAGGACACCCTTGGGCTAGCAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAGGTATGGAAGGAGATCAAATTTGAATTTCAAGCAATGGATACTTTGTAA

Network for GWHGAAZE010126

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02788.17	RuBisCO_large_N	24	144	9.40E-46
PF00016.21	RuBisCO_large	154	250	3.10E-41
PF00016.21	RuBisCO_large	281	327	6.40E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01601	rbcL	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glyoxylate and dicarboxylate metabolism	map00630
		Carbon fixation in photosynthetic organisms	map00710

Gene Ontology

GO term	Ontology	Name
GO:0015977	biological_process	carbon fixation
GO:0016984	molecular_function	ribulose-bisphosphate carboxylase activity
GO:0000287	molecular_function	magnesium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.718
	SRR3591706	second leaf	16.482
	SRR3591707	mature leaf	10.470
	SRR3591708	Shoot apex	15.042
	SRR3591709	Stem	2.827
	SRR3591710	White floral bud	1.129
	SRR3591711	White flower	1.168
	SRR3591712	Green floral bud	1.950
	SRR3591713	Yellow flower	2.021
SRP173429	SRR8316895	Juvenile bud stage	133.746
	SRR8316896	Juvenile bud stage	40.934
	SRR8316897	Juvenile bud stage	195.465
	SRR8316894	Third green stage	195.937
	SRR8316900	Third green stage	14.356
	SRR8316901	Third green stage	12.359
	SRR8316898	Complete white stage	88.259
	SRR8316899	Complete white stage	3.283
	SRR8316903	Complete white stage	58.020
	SRR8316902	Silver flowering stage	96.755
	SRR8316904	Silver flowering stage	76.838
	SRR8316905	Silver flowering stage	99.113
	SRR8316906	Gold flowering stage	2.196
	SRR8316907	Gold flowering stage	1.757
	SRR8316908	Gold flowering stage	2.701
SRP132670	SRR6706286	Control	5.349
	SRR6706287	Light intensity 50%	8.375
	SRR6706288	Light intensity 20%	6.277
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	47.301
	CNS0095593	Slightly white alabastrum(diploid) 2	28.656
	CNS0095594	Slightly white alabastrum(diploid) 3	40.593
	CNS0095595	Whole white alabastrum(diploid) 2	60.603
	CNS0095596	Whole white alabastrum(diploid) 3	44.395
	CNS0095597	Whole white alabastrum(diploid) 4	50.440
	CNS0095598	Silvery flower (diploied) 1	34.721
	CNS0095599	Silvery flower (diploied) 2	39.777
	CNS0095600	Silvery flower (diploied) 3	14.735
	CNS0095601	Golden flower (diploid) 1	33.041
	CNS0095602	Golden flower (diploid) 2	7.512
	CNS0095603	Golden flower (diploid) 3	13.610
	CNS0095604	Slightly white alabastrum(tetraploid) 1	52.455
	CNS0095605	Slightly white alabastrum(tetraploid) 2	57.424
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.702
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.007
	CNS0095608	Whole white alabastrum(tetraploid) 2	55.091
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.793
	CNS0095610	Silvery flower (diploied) 1	10.714
	CNS0095611	Silvery flower (diploied) 2	13.914
	CNS0095612	Silvery flower (diploied) 3	10.824
	CNS0095613	Golden flower (tetraploid) 1	29.238
	CNS0095614	Golden flower (tetraploid) 2	14.206
	CNS0095615	Golden flower (tetraploid) 3	9.271
CRA001975	CRR073297	Stem 1	43.128
	CRR073298	Stem 2	43.872
	CRR073299	Stem 3	16.912
	CRR073300	Leaf 1	15.155
	CRR073301	Leaf 2	18.821
	CRR073302	Leaf 3	20.410
	CRR073303	Juvenile bud 1	39.262
	CRR073304	Juvenile bud 2	36.238
	CRR073305	Juvenile bud 3	56.097
	CRR073306	Third green 1	50.068
	CRR073307	Third green 2	22.087
	CRR073308	Third green 3	58.447
	CRR073309	Second white 1	25.081
	CRR073310	Second white 2	83.837
	CRR073311	Second white 3	111.982
	CRR073312	Silver flowering 1	89.532
	CRR073313	Silver flowering 2	17.028
	CRR073314	Silver flowering 3	51.312
	CRR073315	Gold flowering 1	189.606
	CRR073316	Gold flowering 2	181.890
	CRR073317	Gold flowering 3	226.232
	CRR073318	Tawny withering 1	20.688
	CRR073319	Tawny withering 2	17.425
	CRR073320	Tawny withering 3	17.395