Gene detail

Detail information of GWHGAAZE010201

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ADD31495.1	2.1562E-153	ATP synthase CF1 alpha subunit protein (chloroplast) [Lonicera japonica]
Swissprot	tr\|Q68S21\|ATPA_PANGI	2E-148	ATP synthase subunit alpha, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_01346}
trEMBL	tr\|D3WBM6\|D3WBM6_LONJA	8E-154	ATP synthase subunit alpha, chloroplastic {ECO:0000256\|HAMAP-Rule:MF_01346, ECO:0000256\|RuleBase:RU004286}
TAIR10	ATCG00120.1	1E-109	ATP synthase subunit alpha

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	124015201	124016725	-
GWHAAZE00000002	mRNA	124015201	124016725	-
GWHAAZE00000002	exon	124015201	124015311	-
GWHAAZE00000002	exon	124015591	124015800	-
GWHAAZE00000002	exon	124016054	124016725	-
GWHAAZE00000002	CDS	124016054	124016725	-
GWHAAZE00000002	CDS	124015591	124015800	-
GWHAAZE00000002	CDS	124015201	124015311	-

Transcript Sequence
>GWHTAAZE010213 ATGGTAACCATTCGAGCCGACGAAATTAGTAATATTATCCGTCAACGTATTGAGCAATATAATAGAGAAGTAAAGATTGTAAATACCGGTACCGTACTTCAAGTAGGCGATGGCATTGCTCGTATTCATGGTCTTGATGAAGTAATGGCGGGTGAATTGGTAGAATTTGGAGAGGGTACAATAGGCATTGCTCTGAATTTGGAATCCAATAACGTTGGTGTTGTTTTAATGGGCGGTGGTTTGATGATACAAGAAGGAAGTTCTGTAAAAGCAACAGGAAGAATTGCTCAGATACCAGTGAGTGAGGCCTATTTGGGTCGTGTTATAAATGCTCTGGCTAAACCTATTGATGGTAGAGGTGAAATTGCATCTTCGGAATATCGGTTAATTGAATCTCCTGCTCCAGGTATTATTTCGCGACGTTCCGTATATGAACCTCTTCAAACGGGACTTATTGCTATTGATTCGATGATCCCTATAGGGCGTGGTCAGCGAGAATTAATTATTGGGGACAGACAAACCGGTAAAACAGCAGTAGCAACAGATACGATTCTTAACCAACAAGGCCAAAATGTAATATGCGTTTATGTAGCTATTGGTCAAAAAGCATCTTCTGTGGCTCAAGTAGTGACCACTTTCCGAGAAAAGAGGGCGATGGAATACACTATTGTGTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTCGAAACTCAATCGGGAGATGTTTCGGCTTATATTCCGACTAATGTTATTTCGATTACTGATGGACAAATATTCTTATCCGCCGACCTATTCAATGCTGGAATCAGACCCGCTATTAATGTCGGTCTCTCCGTTTCCAGAGTTGGATCTGCGGCTCAAATTAAAGCCATGAAACAATTTCAAGAAATCATATCTTCTACCAAGACTTTCACCGAAGAAGCAGAAGCCCTTTTGAAAGAAGCTATTCAGGAACAGACGGAGCGTTTTATACTTCAGGAAGAAGTATAA

Network for GWHGAAZE010201

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02874.24	ATP-synt_ab_N	29	93	1.40E-16
PF00006.26	ATP-synt_ab	150	225	1.70E-17
PF00006.26	ATP-synt_ab	227	281	1.10E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02111	ATPF1A, atpA	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Photosynthesis	map00195

Gene Ontology

GO term	Ontology	Name
GO:0046034	biological_process	ATP metabolic process
GO:1902600	biological_process	proton transmembrane transport
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.818
	SRR3591706	second leaf	31.523
	SRR3591707	mature leaf	31.566
	SRR3591708	Shoot apex	12.920
	SRR3591709	Stem	3.466
	SRR3591710	White floral bud	2.314
	SRR3591711	White flower	1.734
	SRR3591712	Green floral bud	3.128
	SRR3591713	Yellow flower	1.981
SRP173429	SRR8316895	Juvenile bud stage	35.506
	SRR8316896	Juvenile bud stage	15.745
	SRR8316897	Juvenile bud stage	40.024
	SRR8316894	Third green stage	46.590
	SRR8316900	Third green stage	8.962
	SRR8316901	Third green stage	5.407
	SRR8316898	Complete white stage	14.165
	SRR8316899	Complete white stage	4.991
	SRR8316903	Complete white stage	11.977
	SRR8316902	Silver flowering stage	24.606
	SRR8316904	Silver flowering stage	22.648
	SRR8316905	Silver flowering stage	21.268
	SRR8316906	Gold flowering stage	6.427
	SRR8316907	Gold flowering stage	4.395
	SRR8316908	Gold flowering stage	4.682
SRP132670	SRR6706286	Control	1.256
	SRR6706287	Light intensity 50%	1.521
	SRR6706288	Light intensity 20%	1.476
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.937
	CNS0095593	Slightly white alabastrum(diploid) 2	17.300
	CNS0095594	Slightly white alabastrum(diploid) 3	23.922
	CNS0095595	Whole white alabastrum(diploid) 2	26.047
	CNS0095596	Whole white alabastrum(diploid) 3	20.831
	CNS0095597	Whole white alabastrum(diploid) 4	21.863
	CNS0095598	Silvery flower (diploied) 1	20.572
	CNS0095599	Silvery flower (diploied) 2	18.428
	CNS0095600	Silvery flower (diploied) 3	11.511
	CNS0095601	Golden flower (diploid) 1	18.461
	CNS0095602	Golden flower (diploid) 2	10.474
	CNS0095603	Golden flower (diploid) 3	10.043
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.114
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.863
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.762
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.822
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.279
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.857
	CNS0095610	Silvery flower (diploied) 1	8.302
	CNS0095611	Silvery flower (diploied) 2	12.562
	CNS0095612	Silvery flower (diploied) 3	10.419
	CNS0095613	Golden flower (tetraploid) 1	13.396
	CNS0095614	Golden flower (tetraploid) 2	9.170
	CNS0095615	Golden flower (tetraploid) 3	10.671
CRA001975	CRR073297	Stem 1	20.543
	CRR073298	Stem 2	20.561
	CRR073299	Stem 3	8.977
	CRR073300	Leaf 1	10.013
	CRR073301	Leaf 2	9.671
	CRR073302	Leaf 3	5.448
	CRR073303	Juvenile bud 1	11.981
	CRR073304	Juvenile bud 2	9.141
	CRR073305	Juvenile bud 3	20.155
	CRR073306	Third green 1	11.051
	CRR073307	Third green 2	6.161
	CRR073308	Third green 3	12.857
	CRR073309	Second white 1	10.751
	CRR073310	Second white 2	42.120
	CRR073311	Second white 3	60.735
	CRR073312	Silver flowering 1	37.475
	CRR073313	Silver flowering 2	9.415
	CRR073314	Silver flowering 3	19.101
	CRR073315	Gold flowering 1	57.517
	CRR073316	Gold flowering 2	71.975
	CRR073317	Gold flowering 3	58.719
	CRR073318	Tawny withering 1	5.658
	CRR073319	Tawny withering 2	8.527
	CRR073320	Tawny withering 3	6.794