Gene detail

Detail information of GWHGAAZE010491

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009588830.1	0	PREDICTED: protein NLP9-like [Nicotiana tomentosiformis]
Swissprot	tr\|O22864\|NLP8_ARATH	2E-169	Protein NLP8
trEMBL	tr\|K4D8J9\|K4D8J9_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc11g045350.1.1}
TAIR10	AT2G43500.2	9E-144	Plant regulator RWP-RK family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	11027766	11031961	+
GWHAAZE00000003	mRNA	11027766	11031961	+
GWHAAZE00000003	exon	11027766	11028839	+
GWHAAZE00000003	exon	11029953	11029997	+
GWHAAZE00000003	exon	11030148	11030870	+
GWHAAZE00000003	exon	11031869	11031961	+
GWHAAZE00000003	CDS	11027766	11028839	+
GWHAAZE00000003	CDS	11029953	11029997	+
GWHAAZE00000003	CDS	11030148	11030870	+
GWHAAZE00000003	CDS	11031869	11031961	+

Transcript Sequence
>GWHTAAZE010503 ATGGAATACCCATTTTGGTCAAAAGGAAAGGAAAGTAGTTACTGGGCTTCTCCAAGAACTCAAATGGAAGGTATGCCTATGCCATCCAAGGATAGTAGTTACTGGCCTTCTCCAAGAGCTCAAATAGAGGGTATCCCTATCCCATCTAAGGATAGTAGTTATTGTGCTTCTCCAAGAATTCAAATGGAGGGTATGCATGGTGTTGCAAGGTATTCGGGTTTTGATGATCTATTTAACAATTCTGCAGAGTTAATGAATTTGGACATGTATGATGGATGGTGCAATAGCCCCTTGGTAGTTCCGGATCAAATGTTTGCCGGCTCGCTATCACCCCTTTATTCAATGTCCCCAAGTTATGGAACCTTAGATGTTATGAATTTGCCAGAACAAAGTAGTGTTGATTTTGTTACGAATGAGGAAAATGCCTCACGGACTTCTTTGAGTGGTGGAGACCGAACTGTGTACCAGCAAACAAACACTCAGGTTGGTTTTCCTTTGGGTTTTGATAATGGTAATGGCTCAACTCCTAAATTAGGTAGTGCTTCCTTTCAGCGTAATAATAGCATTTCAGATATGAGTTATAGTTTGGTGATCCCTAGGTCACTCGAACCGCCCCTTGCCGAAAAGATGCTGAAGGCCCTATCTTTGTTTAAAGAGTCAGCCGGAGGGGGGATTTTAGCTCAATTCTGGGTTCCTATGAATGATGGTGATCGTTACTTGTTAACAACTTGCGATCAACCCTATTTGCTCGATCAAATGCTCGCTGGTTATCGTGAAGTTTCTAGAGAATTCACTTTCTCTGCGGAAGTAAAAGAAGGTTCTTTTCCAGGGCTTCCTGGCCGTGTTTTTATGTCTAAGATTCCAGAGTGGACTTCAAATGTAGTGTATTACGAAAAGGCCGAATACTTGCGTGTTCAACATGCGGTACGCCATGAAGTCCGTGGTTCTATTGCTTTGCCAATTTTTGGAGGTGATCCACTTGAAAGGTCATGTTGTGCAGTGCTGGAGCTCGTTACAATTAAAGAGAAACCCGATTTTGATGCAGAGATAGAAGGAGTTTGCCATGCACTTCAGGCTGTAAATCTAAAGACCAGTCCACCTCCTCGATTTAATCCTCAGTCTGTATCAAAAAATCAAAAGGAGGCTTTGGCTGAGATAGCTGACGTTTTACGAGTTGTATGCCATGCACATAGGTTACCTCTTGCTCTAACATGGATTCCCTGTAGTTATAAAGAGGATGAAGGTGGTGAAATCACTAATTTACGCGTCAGAGGCTGTAATACAAATTCCGCTGAGAAATTTGTATTATGCATCGAGGATACTGGTTGTTATGTGAATGATAGAGAGATGCAAGGATTTGTTCATGCTTGTAGTGAACATTATCTTGAAGAAGGTCAAGGTAATGCCGGCAAAGCACTTCAATCAAATCGACCCTTCTTCTTTCCTGATGTAAAGAACTACCATATTAGTGACTACCCACTTGTACATCATGCACGGAAGTTTGGACTTACTGCTGCCGTTGCAATCAAGCTAAGGAGCACTTACACTGGCGATGATGACTATATATTAGAATTATTTCTACCCGTCAATATGAAAAAGAGTACAGAACAACAACTCTTGTTGAACAACCTCTCCACTACCATGCAAAGGATATGTCAAAGTTTAAGGACGGTTTCAGATACTGAAGTAGTTGGAGAGGACTCTAAAGTTGAGTTTCATAAAGAACCTGTCTTAAACTTGCCAGTAGAGACAGTGTCAGGATCTAGTACTATTGATCTTGCGCCCTCGAACTTATCGCATTCAAGAAGTGTTAGAATGGAATCGGATGGTCCTCATGAGCAGGCAAGAATGGGTATTAGAATTGGGGTTTTGGAAAGCTCAGCTGAAACCGAGTCAGCTTGTCCAAGTTCACTCGGTTTATTAGCAGTCTACTGA

Network for GWHGAAZE010491

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.142
	SRR3591706	second leaf	6.467
	SRR3591707	mature leaf	8.615
	SRR3591708	Shoot apex	7.952
	SRR3591709	Stem	9.116
	SRR3591710	White floral bud	11.383
	SRR3591711	White flower	11.179
	SRR3591712	Green floral bud	12.374
	SRR3591713	Yellow flower	9.806
SRP173429	SRR8316895	Juvenile bud stage	4.155
	SRR8316896	Juvenile bud stage	6.129
	SRR8316897	Juvenile bud stage	2.343
	SRR8316894	Third green stage	3.436
	SRR8316900	Third green stage	8.573
	SRR8316901	Third green stage	7.189
	SRR8316898	Complete white stage	3.395
	SRR8316899	Complete white stage	14.535
	SRR8316903	Complete white stage	7.640
	SRR8316902	Silver flowering stage	4.269
	SRR8316904	Silver flowering stage	9.835
	SRR8316905	Silver flowering stage	3.478
	SRR8316906	Gold flowering stage	10.505
	SRR8316907	Gold flowering stage	7.876
	SRR8316908	Gold flowering stage	10.265
SRP132670	SRR6706286	Control	7.662
	SRR6706287	Light intensity 50%	8.969
	SRR6706288	Light intensity 20%	8.688
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.052
	CNS0095593	Slightly white alabastrum(diploid) 2	2.038
	CNS0095594	Slightly white alabastrum(diploid) 3	2.385
	CNS0095595	Whole white alabastrum(diploid) 2	2.665
	CNS0095596	Whole white alabastrum(diploid) 3	2.323
	CNS0095597	Whole white alabastrum(diploid) 4	1.802
	CNS0095598	Silvery flower (diploied) 1	4.488
	CNS0095599	Silvery flower (diploied) 2	2.095
	CNS0095600	Silvery flower (diploied) 3	15.092
	CNS0095601	Golden flower (diploid) 1	3.290
	CNS0095602	Golden flower (diploid) 2	15.180
	CNS0095603	Golden flower (diploid) 3	14.153
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.293
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.065
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.485
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.112
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.563
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.659
	CNS0095610	Silvery flower (diploied) 1	11.672
	CNS0095611	Silvery flower (diploied) 2	12.337
	CNS0095612	Silvery flower (diploied) 3	16.426
	CNS0095613	Golden flower (tetraploid) 1	5.242
	CNS0095614	Golden flower (tetraploid) 2	11.052
	CNS0095615	Golden flower (tetraploid) 3	16.076
CRA001975	CRR073297	Stem 1	7.191
	CRR073298	Stem 2	6.592
	CRR073299	Stem 3	6.918
	CRR073300	Leaf 1	7.774
	CRR073301	Leaf 2	5.837
	CRR073302	Leaf 3	4.554
	CRR073303	Juvenile bud 1	6.058
	CRR073304	Juvenile bud 2	4.523
	CRR073305	Juvenile bud 3	8.958
	CRR073306	Third green 1	4.624
	CRR073307	Third green 2	2.991
	CRR073308	Third green 3	3.950
	CRR073309	Second white 1	4.150
	CRR073310	Second white 2	7.982
	CRR073311	Second white 3	9.838
	CRR073312	Silver flowering 1	5.265
	CRR073313	Silver flowering 2	6.803
	CRR073314	Silver flowering 3	6.209
	CRR073315	Gold flowering 1	5.212
	CRR073316	Gold flowering 2	7.272
	CRR073317	Gold flowering 3	5.588
	CRR073318	Tawny withering 1	3.411
	CRR073319	Tawny withering 2	2.701
	CRR073320	Tawny withering 3	4.064