Gene detail

Detail information of GWHGAAZE010635

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009415037.1	2.92388E-19	PREDICTED: (+)-neomenthol dehydrogenase isoform X1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9M2E2\|SDR1_ARATH	9E-10	(+)-neomenthol dehydrogenase
trEMBL	tr\|M0TUK0\|M0TUK0_MUSAM	1E-19	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P28970_001}
TAIR10	AT3G59710.1	3E-14	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	16310145	16310459	+
GWHAAZE00000003	mRNA	16310145	16310459	+
GWHAAZE00000003	exon	16310145	16310459	+
GWHAAZE00000003	CDS	16310145	16310459	+

Transcript Sequence
>GWHTAAZE010647 ATGAGAAATTATATGTATATGATATTTAAAAGAAATGAAATGAAAATTTTCAGATGGTGGTCAAAGGATACAGTGGCCATAGTCACGGGAGCAAACAAGGGTATAGGGTTTGCACTGGTGAAAAGACTAGCAGAGCTTGGACTTTCAGTTGTATTAACATCAAGAGATATTCAAAAGGGACTATTGGCTGTTGACTCCTCAAAAGTGTGGGACTATATGTACACTTTTGCCCTCTTGATGTATCTCAGCCTTCTTCCATCAAAGCATTCTCTTCCTGGCTGCATCACAATTTTGGAGGCTTGGATATACTTGTAA

Network for GWHGAAZE010635

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	25	60	3.00E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00079	CBR1	Metabolic pathways	map01100
		Arachidonic acid metabolism	map00590
		Folate biosynthesis	map00790
		Metabolism of xenobiotics by cytochrome P450	map00980

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.176
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.177
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.628
	SRR3591711	White flower	0.320
	SRR3591712	Green floral bud	2.452
	SRR3591713	Yellow flower	0.031
SRP173429	SRR8316895	Juvenile bud stage	9.317
	SRR8316896	Juvenile bud stage	6.442
	SRR8316897	Juvenile bud stage	3.099
	SRR8316894	Third green stage	1.806
	SRR8316900	Third green stage	1.653
	SRR8316901	Third green stage	2.108
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.319
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.098
	SRR8316904	Silver flowering stage	0.131
	SRR8316905	Silver flowering stage	0.194
	SRR8316906	Gold flowering stage	0.385
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.121
SRP132670	SRR6706286	Control	3.052
	SRR6706287	Light intensity 50%	3.848
	SRR6706288	Light intensity 20%	3.018
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.763
	CNS0095593	Slightly white alabastrum(diploid) 2	2.323
	CNS0095594	Slightly white alabastrum(diploid) 3	4.392
	CNS0095595	Whole white alabastrum(diploid) 2	0.161
	CNS0095596	Whole white alabastrum(diploid) 3	0.259
	CNS0095597	Whole white alabastrum(diploid) 4	0.671
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.584
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.898
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.185
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.612
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.150
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.213
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	1.066
	CNS0095613	Golden flower (tetraploid) 1	0.009
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	11.589
	CRR073298	Stem 2	9.206
	CRR073299	Stem 3	18.420
	CRR073300	Leaf 1	0.124
	CRR073301	Leaf 2	0.468
	CRR073302	Leaf 3	1.310
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.474
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.300
	CRR073307	Third green 2	2.802
	CRR073308	Third green 3	0.502
	CRR073309	Second white 1	0.537
	CRR073310	Second white 2	0.119
	CRR073311	Second white 3	0.545
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000