Gene detail

Detail information of GWHGAAZE010836

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002268942.2	4.4956E-173	PREDICTED: 2-isopropylmalate synthase A-like [Vitis vinifera]
Swissprot	tr\|O04973\|LEU1A_SOLPN	4E-172	2-isopropylmalate synthase A
trEMBL	tr\|B5LAV3\|B5LAV3_CAPAN	1E-172	Putative isopropylmalate synthase {ECO:0000313\|EMBL:ACF17660.1}
TAIR10	AT1G74040.1	5E-136	2-isopropylmalate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	27043199	27046758	-
GWHAAZE00000003	mRNA	27043199	27046758	-
GWHAAZE00000003	exon	27043199	27043279	-
GWHAAZE00000003	exon	27043362	27043575	-
GWHAAZE00000003	exon	27044994	27045262	-
GWHAAZE00000003	exon	27046342	27046758	-
GWHAAZE00000003	CDS	27046342	27046758	-
GWHAAZE00000003	CDS	27044994	27045262	-
GWHAAZE00000003	CDS	27043362	27043575	-
GWHAAZE00000003	CDS	27043199	27043279	-

Transcript Sequence
>GWHTAAZE010848 ATGGCGTCAATTTCTCTTTCTCTAAACCCTCACCGCCATTTCTCTTCATCCACCACCACCACCACTTCCTCATTCGCCTCCTCAACCAATCCATTTCGCAATCTATTTCAATTCCACTCCACAAAACCAACCATTCTTCAATTCACCACCACTACTAGAATTAGCTGCTGTTCTTTGTCTGCTCCTCCTCGGCTACGGCCCGAATACGTCCCCAACCGAATCTCCGATCCAAACTATGTCAGAATCTTCGATACGACTCTCAGGGACGGCGAGCAGTCTCCGGGTGCCACCATGACCACCAAGGAGAAGCTGGATATAGCTCGCCAGCTCGCCAAGCTCGGCGTTGATATAATTGAGGCTGGGTTTCCTGCTTCGTCGGAGGCGGACCTCGAGGCCGTCAAGTTGATTGCTCAGCAGGTTGGCAATGCTGTCACAGAGGATGGTCACGTGCCAGTCATTTGCGGACTGGCAAGGTGTAACAAGAACGACATTGACATGGCTTGGGAGGCCGTGAAGCATGCTAAGAAGCCAAGAATACACACATTTATTGCCACTAGTGAGATTCATATGAAGTATAAGCTGAAGAAGTCCAAGGAGGAGGTAGTTGAAAGGGCAAGGAGTATGGTCAGTTATGCTAGGAGTTTGGGTTGCCAAGATGTTGAGTTCAGCCCTGAAGATGCCGGGAGATCTGAAAGGGAATTTCTGTATCAGATTCTCGGGGAAGTTATTAAAGCTGGGGCTACAACCCTTAACATCCCCGATACTGTTGGCTATACCATGCCTAATGAATTTGGGCAGTTGATTGCTGACATAAAATCCAACACCCCTGGAATTGAAAATGTCATCATTTCGACTCACTGCCAGAATGATCTTGGACTTTCTACTGCCAATACTTTAGCGGGGGCATGTGCAGGCGCAAGACAAGTAGAAGTAACAATCAATGGAATTGGCGAGAGAGCTGGTAATGCTTCTCTGGAAGAG

Network for GWHGAAZE010836

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00682.20	HMGL-like	80	327	7.70E-91

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01649	leuA, IMS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Pyruvate metabolism	map00620
		Valine, leucine and isoleucine biosynthesis	map00290

Gene Ontology

GO term	Ontology	Name
GO:0019752	biological_process	carboxylic acid metabolic process
GO:0046912	molecular_function	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.818
	SRR3591706	second leaf	9.290
	SRR3591707	mature leaf	7.607
	SRR3591708	Shoot apex	23.574
	SRR3591709	Stem	10.982
	SRR3591710	White floral bud	6.857
	SRR3591711	White flower	19.980
	SRR3591712	Green floral bud	13.716
	SRR3591713	Yellow flower	26.456
SRP173429	SRR8316895	Juvenile bud stage	8.903
	SRR8316896	Juvenile bud stage	14.496
	SRR8316897	Juvenile bud stage	6.110
	SRR8316894	Third green stage	5.942
	SRR8316900	Third green stage	15.331
	SRR8316901	Third green stage	10.563
	SRR8316898	Complete white stage	0.870
	SRR8316899	Complete white stage	11.497
	SRR8316903	Complete white stage	3.620
	SRR8316902	Silver flowering stage	1.896
	SRR8316904	Silver flowering stage	2.957
	SRR8316905	Silver flowering stage	1.500
	SRR8316906	Gold flowering stage	9.426
	SRR8316907	Gold flowering stage	4.349
	SRR8316908	Gold flowering stage	9.917
SRP132670	SRR6706286	Control	16.879
	SRR6706287	Light intensity 50%	16.337
	SRR6706288	Light intensity 20%	17.645
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.985
	CNS0095593	Slightly white alabastrum(diploid) 2	3.505
	CNS0095594	Slightly white alabastrum(diploid) 3	4.195
	CNS0095595	Whole white alabastrum(diploid) 2	5.023
	CNS0095596	Whole white alabastrum(diploid) 3	3.971
	CNS0095597	Whole white alabastrum(diploid) 4	3.706
	CNS0095598	Silvery flower (diploied) 1	5.483
	CNS0095599	Silvery flower (diploied) 2	7.869
	CNS0095600	Silvery flower (diploied) 3	10.776
	CNS0095601	Golden flower (diploid) 1	4.193
	CNS0095602	Golden flower (diploid) 2	10.913
	CNS0095603	Golden flower (diploid) 3	9.629
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.154
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.872
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.199
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.233
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.282
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.059
	CNS0095610	Silvery flower (diploied) 1	8.769
	CNS0095611	Silvery flower (diploied) 2	6.902
	CNS0095612	Silvery flower (diploied) 3	3.837
	CNS0095613	Golden flower (tetraploid) 1	4.087
	CNS0095614	Golden flower (tetraploid) 2	9.422
	CNS0095615	Golden flower (tetraploid) 3	7.192
CRA001975	CRR073297	Stem 1	13.204
	CRR073298	Stem 2	14.381
	CRR073299	Stem 3	16.303
	CRR073300	Leaf 1	15.610
	CRR073301	Leaf 2	13.561
	CRR073302	Leaf 3	14.520
	CRR073303	Juvenile bud 1	11.241
	CRR073304	Juvenile bud 2	8.199
	CRR073305	Juvenile bud 3	16.183
	CRR073306	Third green 1	1.603
	CRR073307	Third green 2	1.091
	CRR073308	Third green 3	1.575
	CRR073309	Second white 1	3.109
	CRR073310	Second white 2	2.993
	CRR073311	Second white 3	2.597
	CRR073312	Silver flowering 1	3.364
	CRR073313	Silver flowering 2	6.950
	CRR073314	Silver flowering 3	2.739
	CRR073315	Gold flowering 1	9.933
	CRR073316	Gold flowering 2	12.611
	CRR073317	Gold flowering 3	11.049
	CRR073318	Tawny withering 1	9.377
	CRR073319	Tawny withering 2	8.170
	CRR073320	Tawny withering 3	6.924