Gene detail

Detail information of GWHGAAZE010929

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010251899.1	2.0344E-109	PREDICTED: uncharacterized protein LOC104593637 [Nelumbo nucifera]
trEMBL	tr\|M5XTI6\|M5XTI6_PRUPE	3E-104	Uncharacterized protein {ECO:0000313\|EMBL:EMJ22365.1}
TAIR10	AT5G07900.1	3E-43	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	35428237	35429457	-
GWHAAZE00000003	mRNA	35428237	35429457	-
GWHAAZE00000003	exon	35428237	35429457	-
GWHAAZE00000003	CDS	35428237	35429457	-

Transcript Sequence
>GWHTAAZE010941 ATGGCCAATCTCACTCTTAAGAGATTATTACTCGTCTCTTCTTATTTGCCCCATCAATCACTCAGGAGAATCACACCCCAAATTTCAACCATTTGTCAAAGACATTTTCTTAGTACAGTTTCAGTTTCAGATTCAGATTCAGATAAATCATCATTGTTATTGTCATCATTCACAGTTCAATACCTTATGAACACATGCGGGCTTCCCTTAAAAGATGCCCTTTCTGCATCCCGAAAGTTCCAAAAGGAAAGCAAGTCACAAAAACACGAATCTGTCTTGTTCCTTTTGAGATCCTTTCAGTTCTCTGATACCCATATCATGAAACTGCTCATTAAGTTACCCAAGATCCTTCAAGCGAAGGTAAATAATCTCAAGCCTAAATTAGAGTACCTTAGGGAAAATGGGTTTGTGGGTCATCTCCTCCCGGACCTAATTGTATTGTATCCGGTCATTTTGAAAAGAAGCTTGAGTGGCTGCATAAAACCAACGTTTGAATTCCTTAGGAAGTACATACATACGAGTGAGAAAATTGTTGCTGCCATCAAAAGATCGTCATGGTTCCGCTCATATTATTTGAAGGGAACTATGGAGCCAAATATCGACTTCTTGTTAGGTGAAGGGGTTACTGCTAGCGGTATAGAGAGATTGGTTTTGTGGCAGCCGAGAACTTTGACGCAGAGGCTTGATAGAGTTGTCTATGCAGTTCGGACTGTCAAAGAATTGGGGCTCGACCCTAGTACTCCTAAATGTGTAGAATCCATTCGAGTGTTGCTCTCCTTGAGTCATTCGACATGGAATCGGAAAGTGCAAAATTTTAAGACTTTGGGATGGTCTGAGGAGGATATTTGGTTGACGTTTATGCGGCATTCTAGCTGTTTCGCTTTATCTGAGGAGAGAATCAAGAGGACAGTGGATTTTTTTGTGAACACGATGCAATTGAAGCCAGAGGTTATAGCAGCTCATCCCAAGATTCTGTCTTACGCACTAAATACAAGAATTCGCCCACGGTATGATGTTATAAAGGTTTTGGAATCTAGGAAACTGCTTAACAAGGACAACAAGAATTTTTGGATATTCGGACTGACTGAGAAGGATTTCTTGGAAAAATTTGTGGACAAACATTTGGACAAAACTCCAAACTTGTTGGAGGTTTATCGTGGTACTATCGCGGTTGAGAAGATGTATCAGTTGGAGCAAAGTAACATAAACTCTCGTGGGTAG

Network for GWHGAAZE010929

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	95	187	1.10E-09
PF02536.15	mTERF	189	367	2.80E-26

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.804
	SRR3591706	second leaf	1.217
	SRR3591707	mature leaf	2.155
	SRR3591708	Shoot apex	4.802
	SRR3591709	Stem	3.070
	SRR3591710	White floral bud	1.678
	SRR3591711	White flower	3.207
	SRR3591712	Green floral bud	4.435
	SRR3591713	Yellow flower	0.801
SRP173429	SRR8316895	Juvenile bud stage	1.049
	SRR8316896	Juvenile bud stage	1.093
	SRR8316897	Juvenile bud stage	0.240
	SRR8316894	Third green stage	0.496
	SRR8316900	Third green stage	1.389
	SRR8316901	Third green stage	1.547
	SRR8316898	Complete white stage	0.276
	SRR8316899	Complete white stage	1.029
	SRR8316903	Complete white stage	0.340
	SRR8316902	Silver flowering stage	0.213
	SRR8316904	Silver flowering stage	0.260
	SRR8316905	Silver flowering stage	0.122
	SRR8316906	Gold flowering stage	0.298
	SRR8316907	Gold flowering stage	0.183
	SRR8316908	Gold flowering stage	0.807
SRP132670	SRR6706286	Control	0.595
	SRR6706287	Light intensity 50%	0.479
	SRR6706288	Light intensity 20%	0.452
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.033
	CNS0095593	Slightly white alabastrum(diploid) 2	1.725
	CNS0095594	Slightly white alabastrum(diploid) 3	1.578
	CNS0095595	Whole white alabastrum(diploid) 2	2.554
	CNS0095596	Whole white alabastrum(diploid) 3	1.057
	CNS0095597	Whole white alabastrum(diploid) 4	1.135
	CNS0095598	Silvery flower (diploied) 1	1.557
	CNS0095599	Silvery flower (diploied) 2	0.388
	CNS0095600	Silvery flower (diploied) 3	0.587
	CNS0095601	Golden flower (diploid) 1	1.155
	CNS0095602	Golden flower (diploid) 2	0.941
	CNS0095603	Golden flower (diploid) 3	1.141
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.863
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.935
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.737
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.662
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.612
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.846
	CNS0095610	Silvery flower (diploied) 1	0.507
	CNS0095611	Silvery flower (diploied) 2	0.553
	CNS0095612	Silvery flower (diploied) 3	0.601
	CNS0095613	Golden flower (tetraploid) 1	0.579
	CNS0095614	Golden flower (tetraploid) 2	0.296
	CNS0095615	Golden flower (tetraploid) 3	0.211
CRA001975	CRR073297	Stem 1	1.650
	CRR073298	Stem 2	1.554
	CRR073299	Stem 3	1.368
	CRR073300	Leaf 1	0.788
	CRR073301	Leaf 2	0.675
	CRR073302	Leaf 3	0.554
	CRR073303	Juvenile bud 1	0.897
	CRR073304	Juvenile bud 2	0.458
	CRR073305	Juvenile bud 3	0.182
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.005
	CRR073308	Third green 3	0.043
	CRR073309	Second white 1	0.046
	CRR073310	Second white 2	0.056
	CRR073311	Second white 3	0.085
	CRR073312	Silver flowering 1	0.070
	CRR073313	Silver flowering 2	0.109
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.776
	CRR073316	Gold flowering 2	0.865
	CRR073317	Gold flowering 3	0.180
	CRR073318	Tawny withering 1	0.978
	CRR073319	Tawny withering 2	0.201
	CRR073320	Tawny withering 3	1.808