Gene detail

Detail information of GWHGAAZE010932

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010251899.1	1.1052E-104	PREDICTED: uncharacterized protein LOC104593637 [Nelumbo nucifera]
trEMBL	tr\|M5XTI6\|M5XTI6_PRUPE	2E-104	Uncharacterized protein {ECO:0000313\|EMBL:EMJ22365.1}
TAIR10	AT5G07900.1	1E-44	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	35526208	35527449	-
GWHAAZE00000003	mRNA	35526208	35527449	-
GWHAAZE00000003	exon	35526208	35527449	-
GWHAAZE00000003	CDS	35526208	35527449	-

Transcript Sequence
>GWHTAAZE010944 ATGGCAAATCCCACTCTGAAGAGATCACTATTCCTATCTTGTTTTCCCACCCAATTTCTCAGAAGTATAATTACCCCACAATCCTCAACTATTTGTAGGAAACATTTGCTTAGTACAGTTTCAGATTCAGATAAATTATCATCATCATTGTCATCAATGTCGTCCTTCACAGTACAATACCTAATGAACACATGTGGGTTTCCGTTGGAAGATGCCCTTTCGGCTTCCGAAAAGTTGCAATTTAATGAAAACAAGTCACATAAACCACAATCTGTCTTGGAACTTTTGAGATCTTTTCATTTCTATGATACCCACATCACCAAACTCCTCATTAAGTCCCCCAAGATCCTTCAAATGAAGGTGAATAATAATCTTAAGCCTAAATTAGAGTACCTCAGGGATAATGGGCTTGAGGGTCGGCTCCTCCCGGACCTAATTGTATCAAATCCCGAAATTTTGAATAGAAGCTTGAGTGGATTTACAAAACCAAGATTGGAATTCCTTAAGAAATATTTACACACCAATGACAAAGTTTTCGGTGCTGTTAAACGTACTTCCTGGCTTTGGAGACTTAATTTGAAGGGAATTATGGAGCGGAATATCGAGTTGTTGTTAAGTGAAGGGGTGACTACTAGAAGCATAGAGAGATGGGTTTTCTGGCAGCCGAGAACTTTGATGCACAGGGTTGATAGAATTGTCTATGCGATTCGGACTGTCAAAGAGTTGGGGCTCGACCCTAGTTCTCTTAGATGTGTACGAGCTATTCAAATGTTGCTCTCAATCAGCCATTCAACATTGAATCAGAAAGTGCAAAATTTTAAGACTTTAGGATGGTCTGAGGAAATGATCTGGTCCGCGTTTAAGCGGGATTCAATGTGTTTCGGTTTGTCTGAGGAGAATGTCAGGAGGACAATGGATTTTTATGTGAACACGATGAAATTGAAGCCGGAGGTTATTGCAGCTCAACCTAATCTTCTTGCATACGCAATGAATACAAGAATTCGCCCACGGTATAGTGTTATAAAGGTTTTGGAGTGTCGGAAGCTGCTTAAGAAGAAATTTAAGGTTTGTTGGGTATTTACACTGACTGAGAAGGATTTCTTGGAAAAATTTGTGGACAAGCATTTGAACCAAATTCCAAACTTGTTGGAGGTATATCGTGGTACTATCGCGGTTGAGAAGATGGATCAATTAGAACAAAGTAAGTTAACCTCCTATGTGGAGATATGTGCAGTACAATGA

Network for GWHGAAZE010932

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	93	229	2.20E-14
PF02536.15	mTERF	198	368	7.70E-23

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.526
	SRR3591706	second leaf	1.770
	SRR3591707	mature leaf	1.497
	SRR3591708	Shoot apex	3.663
	SRR3591709	Stem	2.390
	SRR3591710	White floral bud	5.948
	SRR3591711	White flower	5.669
	SRR3591712	Green floral bud	5.120
	SRR3591713	Yellow flower	5.063
SRP173429	SRR8316895	Juvenile bud stage	5.390
	SRR8316896	Juvenile bud stage	6.670
	SRR8316897	Juvenile bud stage	2.847
	SRR8316894	Third green stage	3.215
	SRR8316900	Third green stage	11.646
	SRR8316901	Third green stage	8.772
	SRR8316898	Complete white stage	4.337
	SRR8316899	Complete white stage	10.818
	SRR8316903	Complete white stage	7.939
	SRR8316902	Silver flowering stage	4.585
	SRR8316904	Silver flowering stage	6.883
	SRR8316905	Silver flowering stage	3.332
	SRR8316906	Gold flowering stage	9.733
	SRR8316907	Gold flowering stage	9.171
	SRR8316908	Gold flowering stage	4.814
SRP132670	SRR6706286	Control	5.543
	SRR6706287	Light intensity 50%	4.860
	SRR6706288	Light intensity 20%	5.577
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.518
	CNS0095593	Slightly white alabastrum(diploid) 2	6.652
	CNS0095594	Slightly white alabastrum(diploid) 3	5.688
	CNS0095595	Whole white alabastrum(diploid) 2	5.573
	CNS0095596	Whole white alabastrum(diploid) 3	5.200
	CNS0095597	Whole white alabastrum(diploid) 4	5.078
	CNS0095598	Silvery flower (diploied) 1	5.299
	CNS0095599	Silvery flower (diploied) 2	5.257
	CNS0095600	Silvery flower (diploied) 3	11.218
	CNS0095601	Golden flower (diploid) 1	7.964
	CNS0095602	Golden flower (diploid) 2	9.003
	CNS0095603	Golden flower (diploid) 3	8.616
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.776
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.233
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.938
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.579
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.573
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.206
	CNS0095610	Silvery flower (diploied) 1	8.516
	CNS0095611	Silvery flower (diploied) 2	8.336
	CNS0095612	Silvery flower (diploied) 3	8.445
	CNS0095613	Golden flower (tetraploid) 1	5.162
	CNS0095614	Golden flower (tetraploid) 2	6.800
	CNS0095615	Golden flower (tetraploid) 3	9.022
CRA001975	CRR073297	Stem 1	5.473
	CRR073298	Stem 2	5.055
	CRR073299	Stem 3	3.196
	CRR073300	Leaf 1	5.169
	CRR073301	Leaf 2	5.144
	CRR073302	Leaf 3	2.533
	CRR073303	Juvenile bud 1	4.479
	CRR073304	Juvenile bud 2	3.811
	CRR073305	Juvenile bud 3	4.409
	CRR073306	Third green 1	2.083
	CRR073307	Third green 2	2.500
	CRR073308	Third green 3	3.801
	CRR073309	Second white 1	3.095
	CRR073310	Second white 2	5.907
	CRR073311	Second white 3	3.717
	CRR073312	Silver flowering 1	3.888
	CRR073313	Silver flowering 2	1.939
	CRR073314	Silver flowering 3	1.775
	CRR073315	Gold flowering 1	1.892
	CRR073316	Gold flowering 2	3.622
	CRR073317	Gold flowering 3	2.818
	CRR073318	Tawny withering 1	2.281
	CRR073319	Tawny withering 2	2.906
	CRR073320	Tawny withering 3	2.152