Gene detail

Detail information of GWHGAAZE010944

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009768055.1	1.4555E-155	PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Nicotiana sylvestris]
Swissprot	tr\|Q9LYN8\|EXS_ARATH	4E-108	Leucine-rich repeat receptor protein kinase EXS (Precursor)
trEMBL	tr\|A5BX07\|A5BX07_VITVI	6E-156	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN79409.1}
TAIR10	AT5G07280.1	2E-94	Leucine-rich repeat transmembrane protein kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	35765038	35765913	+
GWHAAZE00000003	mRNA	35765038	35765913	+
GWHAAZE00000003	exon	35765038	35765913	+
GWHAAZE00000003	CDS	35765038	35765913	+

Transcript Sequence
>GWHTAAZE010956 ATATTTTATCGGCTACCGAAAATTTCAGCAAGACCTACATTATTGGTGACGGTGGATTCGGTACAGTTTATAGAGCTTCATTGCCAGAAGGAAGAACTTTGCTGTCAAAGGCTCAACGGCGGTCATTTGCATGGTGACCGAGAATTCTTGGCCGAAATGGAGACCATAGGGAAGGTTAAGCATGAAAACCTCGTCCCATTACTTGGGTACTGCGTATTTGGTGATGAGAGGTCCTTGATATACGAATACATGGCGAATGGAAGCCTTGATGTGTGGTTGAGGAACCGGGCAGATGCAGTTGAGGCACTTCACTGGCCCACCAGGTTCAAGATTTGCCTTGGTTCGGCTCGAGGGTTGGCCTTTCTGCACCACGGGTTTGTGCCCCACATCATTCACCGGGACATAAAGGCAAGCAACATTTTGCTCGACGGGAAATTCGAGGCACGGGTTTCGGATTTTGGGCTGGCTCGGATCATTAGCGCATGTGAGACGCATGTCAGCACTGTGCTAGCGGGTACCTTTGGGTATATACCACCTGAGTATGGTCAGACCATGGTGGCTACAACTAAGGGTGACGTGTATAGCTTTGGAGTGGTGATGCTAGAGTTGGTGACCGGCAAGGCACCCACTGGTCAGGCTGATGTTGAGGGTGGGAACCTTGTGGGTTGGGTCAGGTGGATGATCCAAACTGGGAGGGAACCTGAGGTACTTGATCCGTATTTCTCTGCCTCCGCCATGTGGAACGATCAGATGCTGCAGGTTCTTGGGATTGCGCGCTCCTGCACGCATGATGACCCTTGGAAGCGGCCCACAATGCTGGAGGTTGTGAAGATGTTGAAGGAGATTATGGTGAAAACTGGAACATGTGGTGATTAA

Network for GWHGAAZE010944

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	46	279	3.70E-37

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-Xb-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.568
	SRR3591706	second leaf	0.488
	SRR3591707	mature leaf	1.199
	SRR3591708	Shoot apex	2.446
	SRR3591709	Stem	0.268
	SRR3591710	White floral bud	1.122
	SRR3591711	White flower	0.663
	SRR3591712	Green floral bud	8.097
	SRR3591713	Yellow flower	0.107
SRP173429	SRR8316895	Juvenile bud stage	2.431
	SRR8316896	Juvenile bud stage	3.755
	SRR8316897	Juvenile bud stage	0.985
	SRR8316894	Third green stage	1.524
	SRR8316900	Third green stage	5.847
	SRR8316901	Third green stage	5.783
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.267
	SRR8316903	Complete white stage	0.047
	SRR8316902	Silver flowering stage	0.191
	SRR8316904	Silver flowering stage	0.055
	SRR8316905	Silver flowering stage	0.007
	SRR8316906	Gold flowering stage	0.066
	SRR8316907	Gold flowering stage	0.048
	SRR8316908	Gold flowering stage	0.188
SRP132670	SRR6706286	Control	5.410
	SRR6706287	Light intensity 50%	4.548
	SRR6706288	Light intensity 20%	4.052
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.576
	CNS0095593	Slightly white alabastrum(diploid) 2	3.696
	CNS0095594	Slightly white alabastrum(diploid) 3	4.862
	CNS0095595	Whole white alabastrum(diploid) 2	2.302
	CNS0095596	Whole white alabastrum(diploid) 3	2.251
	CNS0095597	Whole white alabastrum(diploid) 4	2.052
	CNS0095598	Silvery flower (diploied) 1	0.827
	CNS0095599	Silvery flower (diploied) 2	0.118
	CNS0095600	Silvery flower (diploied) 3	0.046
	CNS0095601	Golden flower (diploid) 1	0.571
	CNS0095602	Golden flower (diploid) 2	0.313
	CNS0095603	Golden flower (diploid) 3	0.328
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.011
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.526
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.146
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.527
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.310
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.403
	CNS0095610	Silvery flower (diploied) 1	0.052
	CNS0095611	Silvery flower (diploied) 2	0.060
	CNS0095612	Silvery flower (diploied) 3	0.059
	CNS0095613	Golden flower (tetraploid) 1	0.093
	CNS0095614	Golden flower (tetraploid) 2	0.078
	CNS0095615	Golden flower (tetraploid) 3	0.042
CRA001975	CRR073297	Stem 1	3.716
	CRR073298	Stem 2	4.765
	CRR073299	Stem 3	4.257
	CRR073300	Leaf 1	2.477
	CRR073301	Leaf 2	3.037
	CRR073302	Leaf 3	2.006
	CRR073303	Juvenile bud 1	0.913
	CRR073304	Juvenile bud 2	0.447
	CRR073305	Juvenile bud 3	1.744
	CRR073306	Third green 1	0.084
	CRR073307	Third green 2	0.101
	CRR073308	Third green 3	0.245
	CRR073309	Second white 1	0.081
	CRR073310	Second white 2	0.103
	CRR073311	Second white 3	0.061
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.187
	CRR073314	Silver flowering 3	0.095
	CRR073315	Gold flowering 1	0.306
	CRR073316	Gold flowering 2	0.890
	CRR073317	Gold flowering 3	0.277
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.017
	CRR073320	Tawny withering 3	0.023