Gene detail

Detail information of GWHGAAZE010949

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002267774.2	0	PREDICTED: probable receptor-like protein kinase At5g39020 [Vitis vinifera]
Swissprot	tr\|Q9FID6\|Y5392_ARATH	4E-96	Probable receptor-like protein kinase At5g39020 (Precursor)
trEMBL	tr\|F6HAL6\|F6HAL6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49273.1}
TAIR10	AT1G66920.2	5E-87	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	36122662	36126522	-
GWHAAZE00000003	mRNA	36122662	36126522	-
GWHAAZE00000003	exon	36125811	36126522	-
GWHAAZE00000003	exon	36125397	36125423	-
GWHAAZE00000003	exon	36122662	36123764	-
GWHAAZE00000003	CDS	36125811	36126522	-
GWHAAZE00000003	CDS	36125397	36125423	-
GWHAAZE00000003	CDS	36122662	36123764	-

Transcript Sequence
>GWHTAAZE010961 ATGGCTGACTACTTCTTCCATTATTTCTTGTTCTCGTTCCTATTTATATCTGGTCGCCTTGGAGTTGAAGGTACAAATGATGAGTGTAAAATTACCAAATGCGGGAAAAATGGTCCGCCCATTCGATTCCCATTTCAACTTACACCTAACCAGCCAAAACATTGCGGCTACCCAGGGTTTGAGCTATCCTGCAACAGCAAGAAGCAAACAGTGCTCGTACTTCCGGTCGCTTTTGAGGTGGTGGTTGATAAAATTGACTACCTATCACGAAGTATTTATGTACATGATCCCCATAATTGCTTTCCGGCACAGGTTTCAAGGTTCAATCCATCTGCTTCTCCTTTCAAATTCGGGAATTCCTATGGTATTGCTTTGTTCAATTGTTCGCCAGCCGAAAGAAATTATCCAACCTTCGTCCCTTGCCTTAGTGGCCCTGGGTATCAAATTTATGCAGCACAGGAGTATGATGGATATATGATTGATGAATTAACAAATTGTGTTAAGATCCATAACTTCTCATCACTTGGACTTGATTTGTTTGGGTACCCGCAAAGCAACCTTCCGACGATGTCTTGGAAGGAACCAAATTGTAGCATGTGCGAATCAAAAGGCAAAATATGTAGGTGGAAGAATTATAACACTACAACAGCAGCAGCAGGAGCAGGGGAACCTGAACTTATTGAATGTGTGCAAATGCCCAAAAAGCCCACAGGTGCATCAAAGATATTTCACCTTACAGTATTAGGTACAATTTTCCTTTGCCCGGTAATTATCACACTCTACCTCATTTACAACTCTTTCAAAAGAAAGAAAGAGGACCAAGTAAAAGTTGAAAGATTTTTGGAGGATTACAAAGCTCTCAAGCCCAGCAGATACTCGTTCGCTGATATTAAAAAGATAACGAACAATTTCAAGGACAAATTAGGAGAGGGTTCTTATGGGATTGTGTTCAAAGGGAATCTTTCGAGCGAAATATTTGTCGCCGTTAAGGTCCTTGAAAGCTCCATGGAAAATGGCAAGGAGTTTATTAACGAAGTTGGAGCGATGGGCCAGATCCACCACGTCAACGTTGTTCGTTTGGTTGGGTTTTGTGCTGATGGAATTAATCGAGCTCTCATTTACGAGTTCTTACCAAACGAGTCCTTAGAAAAGTTCATATTCTCCGAAACTCAAAATAAAACCTCCCTTGGTTGGGAAAAATTACAAGACATTGCATTAGGCATTGCCAGAGGAATCGAGTATCTTCACCAAGGTTGCGATCACCAAATACTTCATTTCGATATTAAGCCTCATAATATCTTGTTGGACGATAATTTTAATCCAAAAATAGCAGATTTTGGGCAAGCCAAATTGTGCCCCAAGGATCAAAGTAAGGTGTCAATGACAGCCGCTAGAGGGACCATGGGTTATATTGCCCCTGAAGTTTTCTCTAGAAATTTTGGGAATGTGTCGTATAAGTCAGACGTATATAGCTTTGGGATGTTACTAATTGAGATGGTTGGTGGGAGGACGAACATTGAGCTAACAGTCCAAAATCCTAGTCAAACATCCTTTCCAGAATTGATTTATGGCCGTTTATGTCAAGGAGAAGAGCTGGGGATCAAAATCGAAGAAGAGGATCACGCTCAAATAGCGAAGAAGCTAACAATTGTGGGGCTTTGTTGTATTCAATGGTCACCGTTAGATTGTCCTCCCATGAAGATTGTGGTTCAAATGCTCGAAGGGAAAGGAGACATGCTCGCCATGCCTCCGAATCCTTTTGCTTCTGTAGGCCGACACGAGAGCTCAAACAAGCCTGCAAGAGCTATTAATAGAGAGTTAGAAGTTATTAGCGAAGTATAA

Network for GWHGAAZE010949

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13947.7	GUB_WAK_bind	29	96	5.10E-15
PF00069.26	Pkinase	305	507	1.80E-43

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRK10L-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0030247	molecular_function	polysaccharide binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.157
	SRR3591706	second leaf	9.840
	SRR3591707	mature leaf	18.212
	SRR3591708	Shoot apex	5.362
	SRR3591709	Stem	5.283
	SRR3591710	White floral bud	1.862
	SRR3591711	White flower	4.243
	SRR3591712	Green floral bud	1.105
	SRR3591713	Yellow flower	6.169
SRP173429	SRR8316895	Juvenile bud stage	4.385
	SRR8316896	Juvenile bud stage	5.299
	SRR8316897	Juvenile bud stage	6.463
	SRR8316894	Third green stage	1.108
	SRR8316900	Third green stage	0.143
	SRR8316901	Third green stage	0.635
	SRR8316898	Complete white stage	0.474
	SRR8316899	Complete white stage	2.035
	SRR8316903	Complete white stage	1.198
	SRR8316902	Silver flowering stage	2.145
	SRR8316904	Silver flowering stage	2.012
	SRR8316905	Silver flowering stage	1.539
	SRR8316906	Gold flowering stage	11.155
	SRR8316907	Gold flowering stage	6.903
	SRR8316908	Gold flowering stage	30.240
SRP132670	SRR6706286	Control	1.359
	SRR6706287	Light intensity 50%	1.763
	SRR6706288	Light intensity 20%	1.003
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.290
	CNS0095593	Slightly white alabastrum(diploid) 2	3.193
	CNS0095594	Slightly white alabastrum(diploid) 3	4.924
	CNS0095595	Whole white alabastrum(diploid) 2	3.735
	CNS0095596	Whole white alabastrum(diploid) 3	0.189
	CNS0095597	Whole white alabastrum(diploid) 4	2.362
	CNS0095598	Silvery flower (diploied) 1	10.594
	CNS0095599	Silvery flower (diploied) 2	6.366
	CNS0095600	Silvery flower (diploied) 3	4.150
	CNS0095601	Golden flower (diploid) 1	12.575
	CNS0095602	Golden flower (diploid) 2	9.931
	CNS0095603	Golden flower (diploid) 3	8.715
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.685
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.526
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.339
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.178
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.372
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.637
	CNS0095610	Silvery flower (diploied) 1	3.974
	CNS0095611	Silvery flower (diploied) 2	2.503
	CNS0095612	Silvery flower (diploied) 3	1.309
	CNS0095613	Golden flower (tetraploid) 1	7.024
	CNS0095614	Golden flower (tetraploid) 2	10.317
	CNS0095615	Golden flower (tetraploid) 3	2.803
CRA001975	CRR073297	Stem 1	0.801
	CRR073298	Stem 2	0.455
	CRR073299	Stem 3	0.429
	CRR073300	Leaf 1	0.053
	CRR073301	Leaf 2	0.088
	CRR073302	Leaf 3	0.005
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.003
	CRR073305	Juvenile bud 3	0.160
	CRR073306	Third green 1	0.121
	CRR073307	Third green 2	0.043
	CRR073308	Third green 3	0.073
	CRR073309	Second white 1	0.179
	CRR073310	Second white 2	0.780
	CRR073311	Second white 3	0.410
	CRR073312	Silver flowering 1	2.331
	CRR073313	Silver flowering 2	2.902
	CRR073314	Silver flowering 3	2.095
	CRR073315	Gold flowering 1	6.960
	CRR073316	Gold flowering 2	11.009
	CRR073317	Gold flowering 3	7.246
	CRR073318	Tawny withering 1	2.187
	CRR073319	Tawny withering 2	4.759
	CRR073320	Tawny withering 3	1.834