Gene detail

Detail information of GWHGAAZE010966

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008376284.1	3.3272E-170	PREDICTED: probable receptor-like protein kinase At5g39020 [Malus domestica]
Swissprot	tr\|Q9FID5\|Y5393_ARATH	8E-56	Probable receptor-like protein kinase At5g39030 (Precursor)
trEMBL	tr\|F6HWE2\|F6HWE2_VITVI	8E-168	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59006.1}
TAIR10	AT1G66920.2	1E-52	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	37076582	37079702	+
GWHAAZE00000003	mRNA	37076582	37079702	+
GWHAAZE00000003	exon	37076582	37077272	+
GWHAAZE00000003	exon	37077823	37077903	+
GWHAAZE00000003	exon	37078600	37079256	+
GWHAAZE00000003	exon	37079446	37079702	+
GWHAAZE00000003	CDS	37076582	37077272	+
GWHAAZE00000003	CDS	37077823	37077903	+
GWHAAZE00000003	CDS	37078600	37079256	+
GWHAAZE00000003	CDS	37079446	37079702	+

Transcript Sequence
>GWHTAAZE010978 ATGGCTGACTGCTTCTTCCATTATTTCTTGTTCTGGTTTCTATTTATAACAGGTCGCCTTGGAGTTGAAGGTACAAATGATGGGTGTAATATTGCCAAATGCTGGGAAAATGGTCCGCCCATTCGATTCCCATTTCGACTTAAACCTAACCAGCCAAAACATTGCGGCTACCCAGGGTTTGATCTATCTTGCAACCACATGAACCAAACAGTGCTCGAACTTCCAGTCGCTTTTGAGGTGGTGGTTGACAAAATCGACTACATATCACAAAGAATTTCTGTACACGATCCCCATACTTGCTTTCCGGCACAGTTTCTGAGGCTCAATCGATCTGCTTCTCCTTTCAATTTTACTACATGGTCCTATGATTTTGTTTTGTTCAATTGTTCGCCACCTGAAAGAAATATTCGAACCTTGGTCCCTTGCCTCAGTGGCCCCGGGTATCAAATTTATGCAGAGTACTACCGGGAAACATGGAATGATGAATTAACAAATTGTGTTAAGATCCATAACATCTCATCAGTTCCATTTGATTTTTTTGAGCACCTGCAAAGCACTCTTTGGCTATCTTGGAAGGAACCAAATTGTAAAATGTGCAAATCAAAAGGCAAAATGTGTAGGTGGAAGAATTATAACACTACAGCAGCAGGGGAACCCGAACTTCTTGAATGTGTGCCCAAAACAACTACAGTGCGTGGGGAGAAACAGAGTGTCCGGTGTTGGGGGTTTGTTGCAGTGCATGTGGGGAGAAAGAGAAACAAAGTGTCCTGGGTATTAGGTGCAATTTTCCTTTGCCTGGTAATTGTCACACTCTACCTAATTTACAACTCTTTCAAAAGAAAGAAAGAAGACCAAGCAAAAGTTAAAAGATTTTTGGAGGATTACAAAGCTCTCAAGCCCAGCAGATACTCGTTTGCTGATATTAAAAAGATAACGAACAAATTCAAGGAAAAATTGGGAGAGGGTTCTTATGGGACTGTGTTCAAAGGCAAGCTTTCAAGCAATATATTTGTCGCCGTTAAGGTCCTCGAAAGCTCCATGGAAAATGGCAAGGAGTTTATTAATGAAGTTGGAGCAATGGGCTCGATCCACCACGTCAATGTGGTTCATTTGGTTGGGTTTTGTGCAGATGGAATTAATCGAGCTCTCATTTATGAGTTCTTACCAAACAAGTCCTTAGAAAAGTTGATATTCTCCAAAACTCAAAACAAAACATTCCTTGGTTGGGAAAAATTACAAGAAATTGCATTAGGCATTGCTAGGGGAATCGAGTATCTACACCAAGGTTGCGATCGCCAAATACTTCATTTCGACATTAAGCCTCATAATATCTTGTTGGACGATAATTTTAATCCAAAAATAGCAGATTTTGGGCAAGCCAAATTGTGCCCCAAGGATCAAAGCAAGGTATCAATGATGGCCGCTAGAGGAGAAGAGCTGGGGATCAAAATCGAAGAAGAGGAACACGCTGAAATTGCAAAGAAGCTAACGATTATGGGACTTTGTTGCATTCAATGGTCACCGTTAGATCGTCCACCCATGAAGATTGTGGTTCAAATGCTCGAAGGGAAAGGAGACATACTCGCCATGCCTCTGAATCCTTTTGCTTCTATAGGCCGGCACGAGATTTCAAACAAGCCTGCAAGAGCTATTAATAGAGAGTTAGAAGTTATTAGCGAAGCATAA

Network for GWHGAAZE010966

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13947.7	GUB_WAK_bind	29	96	9.90E-15
PF00069.26	Pkinase	315	471	1.80E-32

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRK10L-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0030247	molecular_function	polysaccharide binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.028
	SRR3591706	second leaf	0.431
	SRR3591707	mature leaf	2.361
	SRR3591708	Shoot apex	0.043
	SRR3591709	Stem	0.146
	SRR3591710	White floral bud	0.359
	SRR3591711	White flower	0.477
	SRR3591712	Green floral bud	0.489
	SRR3591713	Yellow flower	0.228
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.863
	SRR8316894	Third green stage	0.080
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.047
	SRR8316898	Complete white stage	0.051
	SRR8316899	Complete white stage	0.031
	SRR8316903	Complete white stage	0.112
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.059
	SRR8316906	Gold flowering stage	0.117
	SRR8316907	Gold flowering stage	0.076
	SRR8316908	Gold flowering stage	0.284
SRP132670	SRR6706286	Control	0.010
	SRR6706287	Light intensity 50%	0.014
	SRR6706288	Light intensity 20%	0.016
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.032
	CNS0095594	Slightly white alabastrum(diploid) 3	0.094
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.024
	CNS0095599	Silvery flower (diploied) 2	0.051
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.011
	CNS0095603	Golden flower (diploid) 3	0.075
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.008
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.072
	CRR073310	Second white 2	0.217
	CRR073311	Second white 3	0.067
	CRR073312	Silver flowering 1	0.019
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.230
	CRR073317	Gold flowering 3	0.113
	CRR073318	Tawny withering 1	0.141
	CRR073319	Tawny withering 2	0.027
	CRR073320	Tawny withering 3	0.000