Gene detail

Detail information of GWHGAAZE010976

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010251899.1	1.1806E-109	PREDICTED: uncharacterized protein LOC104593637 [Nelumbo nucifera]
trEMBL	tr\|A0A067L028\|A0A067L028_JATCU	1E-102	Uncharacterized protein {ECO:0000313\|EMBL:KDP40593.1}
TAIR10	AT5G07900.1	3E-40	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	37473771	37475009	-
GWHAAZE00000003	mRNA	37473771	37475009	-
GWHAAZE00000003	exon	37473771	37475009	-
GWHAAZE00000003	CDS	37473771	37475009	-

Transcript Sequence
>GWHTAAZE010988 ATGGCAAATCCCACTCTGAAGAGATCACTATTCCTATCTTGTTTTCCCACCCAATTTCTCAGAAATATAATCACCCCACAATCCTCAACTATTTGTAGAAAACATTTGCTTAGTACAGTTTCAGATTCAGATAAATCATTGTCATCAGTGTCATCCTTCACAGTACAATACCTAATGAACACATGTGGGTTTCCGTTGGAAGATGCCCTTTCGGCTTCCAAAAAGTTGCAATTGAATGAAAACAAGTCACATAAACACCAATCTGTCATGGAACTTTTGAGATCTTTTCATTTCTGTGATACCCACATCACCAAACTCCTCATTAAGTGCCCCAAGATCCTTCAAATGAAGGTGAATAATAATCTTAAGCCTAAATTAGAGTACCTCAGGGATAATGGGCTTGAGGGTCGGCTCCTCCCAGACCTAATTGTATCAAATCTCGAAATTTTGACTAGAAGCTTGAGTGGATTTGTAAAACCAAGATTGGAATTCCTTAAGAAATATTTACACACCAATGACAAAGTTTTCGGTGCTGTTAAACATACTTCTGGGCTTTGGAGATTTTATTTGAAGGGAATTATGGAGCGGAATATCGAATTGTTGTTAAGTGAAGGGGTAACTACTAGAAGTATAGAGAGATGGATTTTCTGGCAGCCGAGAACTTTGATGCAGAGGGTTGATAGAATTGTCTATGCAATTCGGACTGTCAAAGAGTTGGGGCTCGACCCTAGTTCTTTTACATGTGTACAAGCTATTCAAGTGTTGCTCTCAATCAGCCATTCAACATGGAATCAGAAAGCACAAAATTTTAAGGCTTTAGGATGGTCTGAGGAAATGATCTGGTCCGCGTTTAAGCGGTATTCATTGTGTTTTGCTTTGTCTGAGGAGAAAGTCAGGAGGGCAATGGATTTTTATGTGAACACGATGAAATTGAAGCCGGAGGTTATAGCAGCTCAGCCTAATCTTCTTTCATACGCAATGAATACTAGAATTCGCCCACGGTATAGTGTTATAAAGGTTTTGGAGTGTCGGAAACTGCTTAAGAAGAAATTTAAGGTTTTTTGGGTATTTAGACTGACTGAGAAGGATTTCTTGGAAAAATTTGTGGACAAGCATTTGGACCAAATTCCAAACTTGTTGGAGGTATATCGTGGTACAATCACGGTTGAGAAGAGGGATCAATTAGAACAAAGTAAGTTAAACCTCCTATGTGGAGATATATGCAGTACAATGAAATGA

Network for GWHGAAZE010976

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	73	175	2.80E-08
PF02536.15	mTERF	84	365	8.10E-33

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.773
	SRR3591706	second leaf	0.648
	SRR3591707	mature leaf	0.768
	SRR3591708	Shoot apex	0.875
	SRR3591709	Stem	1.013
	SRR3591710	White floral bud	1.780
	SRR3591711	White flower	1.899
	SRR3591712	Green floral bud	1.646
	SRR3591713	Yellow flower	2.145
SRP173429	SRR8316895	Juvenile bud stage	0.656
	SRR8316896	Juvenile bud stage	0.915
	SRR8316897	Juvenile bud stage	0.223
	SRR8316894	Third green stage	0.509
	SRR8316900	Third green stage	1.964
	SRR8316901	Third green stage	1.473
	SRR8316898	Complete white stage	0.198
	SRR8316899	Complete white stage	1.478
	SRR8316903	Complete white stage	1.069
	SRR8316902	Silver flowering stage	0.410
	SRR8316904	Silver flowering stage	0.695
	SRR8316905	Silver flowering stage	0.177
	SRR8316906	Gold flowering stage	0.801
	SRR8316907	Gold flowering stage	0.988
	SRR8316908	Gold flowering stage	0.766
SRP132670	SRR6706286	Control	0.568
	SRR6706287	Light intensity 50%	0.576
	SRR6706288	Light intensity 20%	0.725
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.021
	CNS0095593	Slightly white alabastrum(diploid) 2	0.596
	CNS0095594	Slightly white alabastrum(diploid) 3	2.109
	CNS0095595	Whole white alabastrum(diploid) 2	1.308
	CNS0095596	Whole white alabastrum(diploid) 3	0.872
	CNS0095597	Whole white alabastrum(diploid) 4	1.510
	CNS0095598	Silvery flower (diploied) 1	1.041
	CNS0095599	Silvery flower (diploied) 2	0.390
	CNS0095600	Silvery flower (diploied) 3	1.064
	CNS0095601	Golden flower (diploid) 1	1.335
	CNS0095602	Golden flower (diploid) 2	1.203
	CNS0095603	Golden flower (diploid) 3	0.751
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.059
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.624
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.254
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.539
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.667
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.620
	CNS0095610	Silvery flower (diploied) 1	0.091
	CNS0095611	Silvery flower (diploied) 2	0.229
	CNS0095612	Silvery flower (diploied) 3	0.182
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.090
	CNS0095615	Golden flower (tetraploid) 3	0.040
CRA001975	CRR073297	Stem 1	0.600
	CRR073298	Stem 2	0.352
	CRR073299	Stem 3	0.533
	CRR073300	Leaf 1	0.589
	CRR073301	Leaf 2	0.484
	CRR073302	Leaf 3	0.255
	CRR073303	Juvenile bud 1	0.263
	CRR073304	Juvenile bud 2	0.360
	CRR073305	Juvenile bud 3	0.280
	CRR073306	Third green 1	0.214
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.205
	CRR073309	Second white 1	0.456
	CRR073310	Second white 2	0.232
	CRR073311	Second white 3	0.146
	CRR073312	Silver flowering 1	0.084
	CRR073313	Silver flowering 2	0.024
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.146
	CRR073316	Gold flowering 2	0.245
	CRR073317	Gold flowering 3	0.028
	CRR073318	Tawny withering 1	0.221
	CRR073319	Tawny withering 2	0.148
	CRR073320	Tawny withering 3	0.170