Gene detail

Detail information of GWHGAAZE010988

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009768055.1	0	PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Nicotiana sylvestris]
Swissprot	tr\|Q9LYN8\|EXS_ARATH	3E-135	Leucine-rich repeat receptor protein kinase EXS (Precursor)
trEMBL	tr\|F6I4A1\|F6I4A1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB61816.1}
TAIR10	AT5G07280.1	5E-117	Leucine-rich repeat transmembrane protein kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	37646455	37647495	+
GWHAAZE00000003	mRNA	37646455	37647495	+
GWHAAZE00000003	exon	37646455	37647495	+
GWHAAZE00000003	CDS	37646455	37647495	+

Transcript Sequence
>GWHTAAZE011000 ATGCTTAAACAAGAAGCTGTTATTCTCGACCGGGGAAAGGGTAAGCTTGTGACAGTAATCGAGCCTGAGTTTACCAATGGGCTTTTGAGAAAGAAGCCGAAGGAGCCACTTAGCATTAATATCGCAACTTTTGAGCACTCTCTGTTACGGATAAACCCTGGGGATATTTTATCGGCTACCGAAAATTTCAGCAAGACCTACATTATTGGTGACGGTGGATTCGGTACAGTTTATAGAGCTTCATTGCCAGAAGGAAGAACTTTTGCTGTCAAAAGGCTCAACGGCGGTCATTTGCATGGTGACCGAGAATTCTTGGCCGAAATGGAGACCATAGGGAAGGTTAAGCATGAAAACCTCGTCCCATTACTTGGGTACTGCGTATTTGGTGATGAGAGGTCCTTGATATACGAATACATGGCGAATGGAAGCCTTGATGTGTGGTTGAGGAACCGGGCAGATGCAGTTGAGGCACTTCACTGGCCCACCAGGTTCAAGATTTGCCTTGGTTCGGCTCGAGGGTTGGCCTTTCTGCACCACGGGTTTGTGCCCCACATCATTCACCGGGACATAAAGGCAAGCAACATTTTGCTTGACGGGAAATTCGAGGCACGGGTTTCAGATTTCGGGCTGGCTCGGATCATTAGCGCATGTGAGACGCATGTCAGCACTGTGCTAGCGGGTACCTTTGGGTATATACCACCTGAGTATGGTCAGACCATGGTGGCTACAACTAAGGGTGACGTGTATAGCTTTGGAGTGGTGATGCTAGAGTTGGTGACCGGCAAGGCACCCACTGGTCAGGCTGATGTTGAGGGTGGGAACCTTGTGGGTTGGGTCAGGTGGATGATCCAAACTGGGAGGGAACCTGAGGTACTTGATCCGTATTTCTCTGCCTCCGCCATGTGGAACGATCAGATGCTGCAGGTTCTTGGGATTGCGCGCTCCTGCACGCATGATGACCCTTGGAAGCGGCCCACAATGCTGGAGGTTGTGAAGATGTTGAAGGAGATTATGGTGAAAACTGGAACATGTGGTGATTAA

Network for GWHGAAZE010988

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	68	334	2.20E-42

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-Xb-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.359
	SRR3591706	second leaf	0.258
	SRR3591707	mature leaf	0.765
	SRR3591708	Shoot apex	1.697
	SRR3591709	Stem	0.116
	SRR3591710	White floral bud	1.930
	SRR3591711	White flower	0.958
	SRR3591712	Green floral bud	6.847
	SRR3591713	Yellow flower	0.123
SRP173429	SRR8316895	Juvenile bud stage	1.988
	SRR8316896	Juvenile bud stage	4.747
	SRR8316897	Juvenile bud stage	1.649
	SRR8316894	Third green stage	1.864
	SRR8316900	Third green stage	6.759
	SRR8316901	Third green stage	6.614
	SRR8316898	Complete white stage	0.128
	SRR8316899	Complete white stage	1.363
	SRR8316903	Complete white stage	0.353
	SRR8316902	Silver flowering stage	0.344
	SRR8316904	Silver flowering stage	0.147
	SRR8316905	Silver flowering stage	0.087
	SRR8316906	Gold flowering stage	0.569
	SRR8316907	Gold flowering stage	0.943
	SRR8316908	Gold flowering stage	0.379
SRP132670	SRR6706286	Control	7.773
	SRR6706287	Light intensity 50%	6.765
	SRR6706288	Light intensity 20%	7.028
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.787
	CNS0095593	Slightly white alabastrum(diploid) 2	4.498
	CNS0095594	Slightly white alabastrum(diploid) 3	5.491
	CNS0095595	Whole white alabastrum(diploid) 2	2.313
	CNS0095596	Whole white alabastrum(diploid) 3	2.367
	CNS0095597	Whole white alabastrum(diploid) 4	3.616
	CNS0095598	Silvery flower (diploied) 1	1.942
	CNS0095599	Silvery flower (diploied) 2	1.600
	CNS0095600	Silvery flower (diploied) 3	0.662
	CNS0095601	Golden flower (diploid) 1	2.438
	CNS0095602	Golden flower (diploid) 2	0.403
	CNS0095603	Golden flower (diploid) 3	0.522
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.190
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.571
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.453
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.101
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.384
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.016
	CNS0095610	Silvery flower (diploied) 1	0.481
	CNS0095611	Silvery flower (diploied) 2	0.256
	CNS0095612	Silvery flower (diploied) 3	0.105
	CNS0095613	Golden flower (tetraploid) 1	0.255
	CNS0095614	Golden flower (tetraploid) 2	0.074
	CNS0095615	Golden flower (tetraploid) 3	0.035
CRA001975	CRR073297	Stem 1	5.370
	CRR073298	Stem 2	5.299
	CRR073299	Stem 3	6.864
	CRR073300	Leaf 1	3.374
	CRR073301	Leaf 2	4.220
	CRR073302	Leaf 3	2.951
	CRR073303	Juvenile bud 1	2.620
	CRR073304	Juvenile bud 2	0.797
	CRR073305	Juvenile bud 3	3.715
	CRR073306	Third green 1	0.280
	CRR073307	Third green 2	0.188
	CRR073308	Third green 3	0.262
	CRR073309	Second white 1	0.068
	CRR073310	Second white 2	0.144
	CRR073311	Second white 3	0.051
	CRR073312	Silver flowering 1	0.269
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.575
	CRR073315	Gold flowering 1	0.874
	CRR073316	Gold flowering 2	1.648
	CRR073317	Gold flowering 3	1.274
	CRR073318	Tawny withering 1	0.015
	CRR073319	Tawny withering 2	0.133
	CRR073320	Tawny withering 3	0.054