Gene detail

Detail information of GWHGAAZE011035

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP19959.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LZ72\|KCS21_ARATH	0	3-ketoacyl-CoA synthase 21
trEMBL	tr\|A0A068VH99\|A0A068VH99_COFCA	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}
TAIR10	AT5G04530.1	2E-156	3-ketoacyl-CoA synthase 19

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	39757792	39759078	-
GWHAAZE00000003	mRNA	39757792	39759078	-
GWHAAZE00000003	exon	39757792	39759078	-
GWHAAZE00000003	CDS	39757792	39759078	-

Transcript Sequence
>GWHTAAZE011047 ATGATACATTATGAGTGCTATTTGCCGCCCGAGGACAGGCTACTCAACTCTGAAATGTGTGCAAAAACCATTCTGCGCAACAAGAACCTCGGCCTTGAAGAGTACAAGTTCTTGTTGCAGACAATTGTCAATTCTGGCATTGGTGAGCAAACTTATGGCCCAAGAAACATTGTCGTGGATAGTAGAGAAGAGCGCCCAACGCTTCTCGATTCTCTAGCCGAGATGGACGAGTTCTTTTTCGACACACTCGATAAACTTTTTATGAAAACGGGCATTTCTCCTTTGGAAATCGACATACTTGTGGTGAATGTGTCTTTACTCTCTACTCAGCCTTCTCTCACGGCTAGGATAGTGAACCATTACAAAATGAGACCGGATATAAAGACATTCAACCTCTCTGGAATGGGCTGTAGCGCTAGCCTTGTGGCTATCGACCTCGTTCAGCATTTGTTCAAGATTCACAAGAAAGTTTTCGCGCTTGTGGTGAGCACGGAATCTATGGCTCCAAATTGGTACTGTGGGAAGGAGCGGTCGATGATGCTATCAAACTGTTTGTTCCGCTCGGGTGGTTGCTCGATGCTTTTCACTAATAACCGAGATCTTAAAAGTCGAGCCATTCTTGAGTTGAAGCATATGGTTCGAACCCATATGGGCTCGAGCGATGAAGCATACGATTGTTGCCTACAAATGGAAGACAACCTCGGATATCGAGGCTTTCGCCTCACCAAAGGCCTCACCAAGGCTGCATCTCAAGCCTTAGCCGAGAACCTGGGGGTGCTTCTACCTAAAATGCTACCACTGTGGGAACTATTACGGTACGTGGCTCACTCTCGCCTGTTCAACGAAGGTACTAAACGCAAAATCCCAAACCTCAAAACGGGGGTTGAGCACTTATGTATACACCCCGGTGGAAGGGCAGTTATTGATGGGCTCGGTAAGAGCCTGGGGCTCACAGAGCATGACCTCGAGCCGGCTAGGATGACGCTCCATCGGTTTGGTAACACCTCGGCTGGTGGGCTTTGGTATGTATTGGGTTACATGGAGGCCAAGAAGAGACTTAAGAAGGGTGAAAAAATCTTGATGATTAGCTTGGGTGCAGGTTTCAAATGCAACAATTGTGTGTGGGAGGTACTGAGGGACTTGGATGATGGAAATGTGTGGAAAGATTGCATAGAGAGTTATCCACCAGAAACCCTAGTCAATGAATTCATGGAGAAGTATGGGTGGATCAACGACGAAGATGCAAACTTCGCTCGATTTGAATTTGGCAATGAATTTGCCAATTAA

Network for GWHGAAZE011035

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08392.13	FAE1_CUT1_RppA	1	276	2.60E-107
PF08541.11	ACP_syn_III_C	295	376	3.00E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15397	KCS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid elongation	map00062
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.952
	SRR3591706	second leaf	0.925
	SRR3591707	mature leaf	3.149
	SRR3591708	Shoot apex	3.789
	SRR3591709	Stem	4.754
	SRR3591710	White floral bud	6.215
	SRR3591711	White flower	14.924
	SRR3591712	Green floral bud	1.287
	SRR3591713	Yellow flower	155.250
SRP173429	SRR8316895	Juvenile bud stage	1.717
	SRR8316896	Juvenile bud stage	1.646
	SRR8316897	Juvenile bud stage	0.171
	SRR8316894	Third green stage	0.647
	SRR8316900	Third green stage	1.114
	SRR8316901	Third green stage	0.548
	SRR8316898	Complete white stage	4.672
	SRR8316899	Complete white stage	8.410
	SRR8316903	Complete white stage	10.217
	SRR8316902	Silver flowering stage	3.682
	SRR8316904	Silver flowering stage	6.095
	SRR8316905	Silver flowering stage	1.813
	SRR8316906	Gold flowering stage	9.257
	SRR8316907	Gold flowering stage	26.115
	SRR8316908	Gold flowering stage	1.697
SRP132670	SRR6706286	Control	2.405
	SRR6706287	Light intensity 50%	1.901
	SRR6706288	Light intensity 20%	1.629
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.048
	CNS0095593	Slightly white alabastrum(diploid) 2	4.632
	CNS0095594	Slightly white alabastrum(diploid) 3	1.115
	CNS0095595	Whole white alabastrum(diploid) 2	2.666
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	1.930
	CNS0095598	Silvery flower (diploied) 1	8.807
	CNS0095599	Silvery flower (diploied) 2	6.234
	CNS0095600	Silvery flower (diploied) 3	2.771
	CNS0095601	Golden flower (diploid) 1	8.101
	CNS0095602	Golden flower (diploid) 2	4.718
	CNS0095603	Golden flower (diploid) 3	5.365
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.909
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.422
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.088
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.642
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.876
	CNS0095612	Silvery flower (diploied) 3	0.440
	CNS0095613	Golden flower (tetraploid) 1	0.111
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.016
	CRR073298	Stem 2	1.745
	CRR073299	Stem 3	2.207
	CRR073300	Leaf 1	1.920
	CRR073301	Leaf 2	3.047
	CRR073302	Leaf 3	2.022
	CRR073303	Juvenile bud 1	0.587
	CRR073304	Juvenile bud 2	0.640
	CRR073305	Juvenile bud 3	9.605
	CRR073306	Third green 1	3.072
	CRR073307	Third green 2	3.174
	CRR073308	Third green 3	3.133
	CRR073309	Second white 1	4.652
	CRR073310	Second white 2	5.177
	CRR073311	Second white 3	6.917
	CRR073312	Silver flowering 1	14.372
	CRR073313	Silver flowering 2	11.685
	CRR073314	Silver flowering 3	16.502
	CRR073315	Gold flowering 1	27.633
	CRR073316	Gold flowering 2	21.292
	CRR073317	Gold flowering 3	46.866
	CRR073318	Tawny withering 1	5.604
	CRR073319	Tawny withering 2	2.972
	CRR073320	Tawny withering 3	3.830