Gene detail

Detail information of GWHGAAZE011341

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP20327.1	hypothetical protein JCGZ_06413 [Jatropha curcas]
Swissprot	tr\|P48386\|CHS1_CAMSI	Chalcone synthase 1
trEMBL	tr\|A0A067J9A0\|A0A067J9A0_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP20327.1}
TAIR10	AT5G13930.1	Chalcone and stilbene synthase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	58046648	58048773	-
GWHAAZE00000003	mRNA	58046648	58048773	-
GWHAAZE00000003	exon	58046648	58047639	-
GWHAAZE00000003	exon	58048596	58048773	-
GWHAAZE00000003	CDS	58048596	58048773	-
GWHAAZE00000003	CDS	58046648	58047639	-

Transcript Sequence
>GWHTAAZE011353 ATGGTGACCGTGGAGGAGATTCGAAAAGCGCAAAGAGCAGAAGGGCCAGCGACAATCTTAGCGATTGGAACAGCGACTCCTACTCATTGTGTCGATCAGAGCACTTATCCGGATTATTATTTTCGTATCACCAATAGCGAACATAAGGTCGAGCTCAAAGAAAAATTTAAGCGCATGTGTGAAAAATCAATGATTAAAAAACGTTATATGCACATAACCGAGGAAATCTTAAGAGAAAATCCAAGTATGTGCGAGTACATGGCGCCTTCTCTAGATGCTAGGCAAGACATAGTGGTGGTAGAAGTACCAAAACTGGGCAAAGAAGCAGCCACAAGGGCAATTAAGGAATGGGGCCAACCCAAGTCTAAAATCACCCACTTGGTCTTTTGTACCACCAGCGGCATCGACATGCCTGGCGCGGACTACCAGCTCACCAAGCTCCTTGGCCTAAGCCCTTCGGTCAAGCGCCTCATGATGTACCAACAAGGCTGCTTTGCTGGTGGCACAGTCCTCCGGCTGGCCAAGGACCTGGCCGAGAACAACAAAGGGGCCCGTGTCCTCGTGGTCTGCTCTGAGATCACTGCAGTCACTTTTCGTGGACCCAGTGACACGCATCTCGATAGCTTGGTGGGCCAGGCATTGTTTGGCGATGGGGCAGCCGCTATCATTATTGGGTCCGACCCAGTGGCAGATGTTGAAAAGCCGTTGTTTGAGGTTGTCTCGGCAGCCCAGACCATTCTCCCTGATAGCGATGGAGCTATAGATGGACACGTCCGCGAGGTTGGGCTTACTTTCCATCTGCTCAAGGATGTTCCCGGGATCATCTCGAAGAACATTGAGAAGAGTCTAGTGGAGGCCTTTAAGCCTTTGGGTATTTCGGACTGGAACTCGCTTTTCTGGATCGCCCACCCGGGCGGGCCAGCGATTTTGGACCAAGTGGAAGAGAAGCTAGCCTTAAAGCCTAAGAAGCTCGAGGCCACAAGGCATGTGCTTAGCGAGTATGGTAACATGTCGAGTGCTTGCGTTCTGTTTATAATGGATGAGATGAGAAAGAAGTCCGGCACAGATGGGTTCAAGACCACCGGTGAGGGGCTCGAATGGGGCGTGCTTTTCGGGTTTGGGCCAGGGCTCACCGTTGAGACTGTGGTTCTCCATAGTTTGTCTACTTGA

Network for GWHGAAZE011341

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00195.20	Chal_sti_synt_N	5	228	4.90E-124
PF02797.16	Chal_sti_synt_C	238	387	5.50E-71

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00660	CHS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Flavonoid biosynthesis	map00941
		Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0016746	molecular_function	transferase activity, transferring acyl groups
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.693
	SRR3591706	second leaf	8.813
	SRR3591707	mature leaf	0.120
	SRR3591708	Shoot apex	35.598
	SRR3591709	Stem	195.418
	SRR3591710	White floral bud	126.217
	SRR3591711	White flower	172.939
	SRR3591712	Green floral bud	26.003
	SRR3591713	Yellow flower	115.116
SRP173429	SRR8316895	Juvenile bud stage	60.946
	SRR8316896	Juvenile bud stage	56.132
	SRR8316897	Juvenile bud stage	3.330
	SRR8316894	Third green stage	6.477
	SRR8316900	Third green stage	7.460
	SRR8316901	Third green stage	11.525
	SRR8316898	Complete white stage	7.336
	SRR8316899	Complete white stage	32.478
	SRR8316903	Complete white stage	13.639
	SRR8316902	Silver flowering stage	23.127
	SRR8316904	Silver flowering stage	145.552
	SRR8316905	Silver flowering stage	14.109
	SRR8316906	Gold flowering stage	79.264
	SRR8316907	Gold flowering stage	48.017
	SRR8316908	Gold flowering stage	102.392
SRP132670	SRR6706286	Control	4.281
	SRR6706287	Light intensity 50%	3.929
	SRR6706288	Light intensity 20%	3.927
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	159.761
	CNS0095593	Slightly white alabastrum(diploid) 2	74.790
	CNS0095594	Slightly white alabastrum(diploid) 3	322.463
	CNS0095595	Whole white alabastrum(diploid) 2	61.005
	CNS0095596	Whole white alabastrum(diploid) 3	46.542
	CNS0095597	Whole white alabastrum(diploid) 4	56.684
	CNS0095598	Silvery flower (diploied) 1	95.352
	CNS0095599	Silvery flower (diploied) 2	131.177
	CNS0095600	Silvery flower (diploied) 3	106.108
	CNS0095601	Golden flower (diploid) 1	72.700
	CNS0095602	Golden flower (diploid) 2	69.851
	CNS0095603	Golden flower (diploid) 3	66.951
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.828
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.738
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.373
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.820
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.598
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.550
	CNS0095610	Silvery flower (diploied) 1	76.430
	CNS0095611	Silvery flower (diploied) 2	38.938
	CNS0095612	Silvery flower (diploied) 3	82.515
	CNS0095613	Golden flower (tetraploid) 1	14.868
	CNS0095614	Golden flower (tetraploid) 2	112.003
	CNS0095615	Golden flower (tetraploid) 3	118.209
CRA001975	CRR073297	Stem 1	40.782
	CRR073298	Stem 2	28.839
	CRR073299	Stem 3	39.595
	CRR073300	Leaf 1	14.401
	CRR073301	Leaf 2	14.453
	CRR073302	Leaf 3	4.066
	CRR073303	Juvenile bud 1	6.190
	CRR073304	Juvenile bud 2	3.495
	CRR073305	Juvenile bud 3	12.450
	CRR073306	Third green 1	76.854
	CRR073307	Third green 2	115.988
	CRR073308	Third green 3	307.953
	CRR073309	Second white 1	37.723
	CRR073310	Second white 2	113.439
	CRR073311	Second white 3	46.163
	CRR073312	Silver flowering 1	28.389
	CRR073313	Silver flowering 2	56.554
	CRR073314	Silver flowering 3	58.633
	CRR073315	Gold flowering 1	0.102
	CRR073316	Gold flowering 2	0.219
	CRR073317	Gold flowering 3	2.041
	CRR073318	Tawny withering 1	55.516
	CRR073319	Tawny withering 2	53.771
	CRR073320	Tawny withering 3	53.993