Gene detail

Detail information of GWHGAAZE011504

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007227725.1	hypothetical protein PRUPE_ppa004448mg [Prunus persica]
Swissprot	tr\|Q94AR8\|LEUC_ARATH	3-isopropylmalate dehydratase large subunit (Precursor)
trEMBL	tr\|M5XSL7\|M5XSL7_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ28924.1}
TAIR10	AT4G13430.1	isopropyl malate isomerase large subunit 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	63950330	63959462	+
GWHAAZE00000003	mRNA	63950330	63959462	+
GWHAAZE00000003	exon	63950330	63950377	+
GWHAAZE00000003	exon	63951208	63951345	+
GWHAAZE00000003	exon	63951459	63951629	+
GWHAAZE00000003	exon	63953326	63953478	+
GWHAAZE00000003	exon	63953589	63953657	+
GWHAAZE00000003	exon	63953946	63954062	+
GWHAAZE00000003	exon	63954352	63954426	+
GWHAAZE00000003	exon	63954617	63954694	+
GWHAAZE00000003	exon	63955312	63955407	+
GWHAAZE00000003	exon	63955617	63955666	+
GWHAAZE00000003	exon	63956070	63956151	+
GWHAAZE00000003	exon	63956316	63956447	+
GWHAAZE00000003	exon	63957248	63957295	+
GWHAAZE00000003	exon	63957418	63957559	+
GWHAAZE00000003	exon	63958513	63958568	+
GWHAAZE00000003	exon	63959322	63959462	+
GWHAAZE00000003	CDS	63950330	63950377	+
GWHAAZE00000003	CDS	63951208	63951345	+
GWHAAZE00000003	CDS	63951459	63951629	+
GWHAAZE00000003	CDS	63953326	63953478	+
GWHAAZE00000003	CDS	63953589	63953657	+
GWHAAZE00000003	CDS	63953946	63954062	+
GWHAAZE00000003	CDS	63954352	63954426	+
GWHAAZE00000003	CDS	63954617	63954694	+
GWHAAZE00000003	CDS	63955312	63955407	+
GWHAAZE00000003	CDS	63955617	63955666	+
GWHAAZE00000003	CDS	63956070	63956151	+
GWHAAZE00000003	CDS	63956316	63956447	+
GWHAAZE00000003	CDS	63957248	63957295	+
GWHAAZE00000003	CDS	63957418	63957559	+
GWHAAZE00000003	CDS	63958513	63958568	+
GWHAAZE00000003	CDS	63959322	63959462	+

Transcript Sequence
>GWHTAAZE011516 ATGGCCTCCTCTGCTATTGCTTCTAGCTCCACTCCTTTTATCAAACAGGGTTTGGGTCTCTCTGCGTTCTCTGGACAATCCTCAATTTTCCCCATCCAGAAAAATCCCAAGAAAAATGTTTCCAAGAAAATTGTTTCCGTCATGGCCCCACAACAATCTGAACGCAAGCCATCCACCAGTGGATCCGCCAAGAAAGCAATGACTATGACTGAGAAAATATTTTCTAGGGCTTCTGAGAAAACCCAGTTGAGCCCGGGTGATAATGTTTGGGTTAATGTTGATATCTTGATGACCCATGATGGTTGTGGCCCCGGGACCATTGGAATTTTCAAGAGAGAATTTGGGGAGAATGCTAAGGTTTGGGACCGTGAAAAGATTGTTGTTATACCTGACCACTACATATTCACGACTGATGAACGAGCACATCGAAATATGGATATCTTGAGGGATTTCTGCACCGAACAAAATATTAAGTACTTTTATGATATTAAAGATCTTGGAAATTTCAAGGCTAATCCAGATTATAAAGGTGTATGCCATGTTGCTCTTGCACAAGAAGGTCATTGCAGACCTGGAGAGGTCCTGTTAGGTACAGACTCCCACACATGTACTGCCGGAGCATTTGGCCAATTTGCTACTGGAATCGGCAACACTGATGCAGGTTTTGTATTGGGCGCTGGAAAGCTTTTGCTTAAGGTGCCACCAACTTTGAGGTTTGTATTGGATGGTGAAATGCCCAATTATTTGCTTGCAAAGGATTTGATTTTACAAATTATTGGTGAAATGTCCGTCTCCGGTGCCACATATAAAGCAATGGAGTTTGTTGGATCTACCATTGAAAGCTTAACCATGGAAGAAAGGATGACATTATGCAACATGGCTGTTGAAGCTGGAGGAAAGAATGGGATTGTTCCGGCTGATGCTACTACCTATAAGTACCTTGAGGGCAAAACATCCCTGCCCTTTGAGCCAGTTTATAGTGATGATCAAGCCAGATTTGTTCAGGAGTACAGATTCGATGTCTCAAAGCTGGAGCCGTTGGTGGCAAAGGTGAGTTTTGATCGTTGGCATTGGCACCCTTATTCTCCTGATAATCGCGCTTTAGCAAGAGAATGCAAAGATGTGAAAATTGACAGAGTATATATTGGATCTTGTACCGGTGGAAAAACTGAGGATTTCATGGCCGCAGCCAAACTTTTCTTAGCTTCTGGCAAGAAGGTCAAAGTACCGACATTCCTTGTCCCGGCTACTCAAAAGGTGTGGATGGACGTATATAGCCTCCCGGTTCCAGGATCTGGTGGAAAGACTTGCTCCCAGATTTTCGAAGAAGCTGGTTGTGATACCCCTACTGGTCCTAGTTGCGGTGCTTGTATGGGCGGCCTTAAAGACAATTATGCACCTCGCACTTGGGAGGCTATGGATTCGATTCTTCCTCTCTCTCTTTCACTTGACCAGGTATGCGTCTCAACCACCAATAGGAACTTCCCGGGACGCATGGGCCACAAAGAAGGTAAAATTTATCTAGCTTCTCCATACACGGCCGCAGCATCGGCTTTGACCGGCTTTGTCACCGATCCAAGAGACTTTCTGCAGTAA

Network for GWHGAAZE011504

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00330.21	Aconitase	91	521	1.80E-76

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01703	leuC, IPMI-L	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		C5-Branched dibasic acid metabolism	map00660
		Valine, leucine and isoleucine biosynthesis	map00290
		Glucosinolate biosynthesis	map00966

Gene Ontology

GO term	Ontology	Name
GO:0008652	biological_process	cellular amino acid biosynthetic process
GO:0016836	molecular_function	hydro-lyase activity
GO:0051539	molecular_function	4 iron, 4 sulfur cluster binding
GO:0003861	molecular_function	3-isopropylmalate dehydratase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.270
	SRR3591706	second leaf	23.517
	SRR3591707	mature leaf	20.725
	SRR3591708	Shoot apex	11.876
	SRR3591709	Stem	14.630
	SRR3591710	White floral bud	17.989
	SRR3591711	White flower	15.675
	SRR3591712	Green floral bud	28.662
	SRR3591713	Yellow flower	15.712
SRP173429	SRR8316895	Juvenile bud stage	3.443
	SRR8316896	Juvenile bud stage	7.936
	SRR8316897	Juvenile bud stage	5.155
	SRR8316894	Third green stage	2.496
	SRR8316900	Third green stage	7.725
	SRR8316901	Third green stage	9.349
	SRR8316898	Complete white stage	0.124
	SRR8316899	Complete white stage	0.688
	SRR8316903	Complete white stage	0.155
	SRR8316902	Silver flowering stage	0.563
	SRR8316904	Silver flowering stage	0.330
	SRR8316905	Silver flowering stage	0.110
	SRR8316906	Gold flowering stage	0.301
	SRR8316907	Gold flowering stage	0.327
	SRR8316908	Gold flowering stage	0.751
SRP132670	SRR6706286	Control	4.551
	SRR6706287	Light intensity 50%	4.460
	SRR6706288	Light intensity 20%	4.357
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.398
	CNS0095593	Slightly white alabastrum(diploid) 2	7.550
	CNS0095594	Slightly white alabastrum(diploid) 3	10.709
	CNS0095595	Whole white alabastrum(diploid) 2	12.204
	CNS0095596	Whole white alabastrum(diploid) 3	16.406
	CNS0095597	Whole white alabastrum(diploid) 4	16.537
	CNS0095598	Silvery flower (diploied) 1	0.557
	CNS0095599	Silvery flower (diploied) 2	1.304
	CNS0095600	Silvery flower (diploied) 3	0.771
	CNS0095601	Golden flower (diploid) 1	0.831
	CNS0095602	Golden flower (diploid) 2	0.651
	CNS0095603	Golden flower (diploid) 3	0.537
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.283
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.134
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.478
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.112
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.758
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.792
	CNS0095610	Silvery flower (diploied) 1	3.367
	CNS0095611	Silvery flower (diploied) 2	4.821
	CNS0095612	Silvery flower (diploied) 3	5.458
	CNS0095613	Golden flower (tetraploid) 1	2.638
	CNS0095614	Golden flower (tetraploid) 2	4.502
	CNS0095615	Golden flower (tetraploid) 3	2.092
CRA001975	CRR073297	Stem 1	2.867
	CRR073298	Stem 2	3.989
	CRR073299	Stem 3	3.152
	CRR073300	Leaf 1	7.811
	CRR073301	Leaf 2	5.628
	CRR073302	Leaf 3	4.242
	CRR073303	Juvenile bud 1	6.591
	CRR073304	Juvenile bud 2	5.201
	CRR073305	Juvenile bud 3	1.643
	CRR073306	Third green 1	1.484
	CRR073307	Third green 2	3.371
	CRR073308	Third green 3	1.765
	CRR073309	Second white 1	0.454
	CRR073310	Second white 2	0.601
	CRR073311	Second white 3	0.694
	CRR073312	Silver flowering 1	3.113
	CRR073313	Silver flowering 2	2.356
	CRR073314	Silver flowering 3	1.449
	CRR073315	Gold flowering 1	4.147
	CRR073316	Gold flowering 2	1.771
	CRR073317	Gold flowering 3	1.292
	CRR073318	Tawny withering 1	1.962
	CRR073319	Tawny withering 2	1.853
	CRR073320	Tawny withering 3	2.658