Gene detail

Detail information of GWHGAAZE011701

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006354974.1	0	PREDICTED: receptor-like protein kinase FERONIA-like [Solanum tuberosum]
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	3E-107	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|M1APN7\|M1APN7_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400027429}
TAIR10	AT3G51550.1	2E-97	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	71669768	71674440	-
GWHAAZE00000003	mRNA	71669768	71674440	-
GWHAAZE00000003	exon	71669768	71670087	-
GWHAAZE00000003	exon	71670655	71670799	-
GWHAAZE00000003	exon	71670915	71671051	-
GWHAAZE00000003	exon	71671238	71671373	-
GWHAAZE00000003	exon	71671977	71672251	-
GWHAAZE00000003	exon	71672964	71674440	-
GWHAAZE00000003	CDS	71672964	71674440	-
GWHAAZE00000003	CDS	71671977	71672251	-
GWHAAZE00000003	CDS	71671238	71671373	-
GWHAAZE00000003	CDS	71670915	71671051	-
GWHAAZE00000003	CDS	71670655	71670799	-
GWHAAZE00000003	CDS	71669768	71670087	-

Transcript Sequence
>GWHTAAZE011713 ATGTTGTATGCTCAACTACCCATTTTCACATTTCTTTACTTCTTGTTCTTCCTCCTCCACCATTCAATTCTTATCTTTGCTGCGAACTCTCCAAACTCTAATTCTGTTTTTGATAGTGATAATACTGCCTTCCTTAGCAATCCCAATTCCGGGTCTTCGATATCTTGGCCATGGAGATTAGTACTAGCTTTTGGCCGTATAAACACAATTGCAACTGTTATTATAATTTTGATGACTTCATTGAATGTTGTTGTTTATAAGTTGCGGCAAATTCAAGAAGCGAACCTTTACAAGAGACTAAATGATCTGTCATTATTGCCTTCAGAAAAAATATGCCGCCGCTTTTCACTGGATGATATTCTTTCCGCCACCAATGGATTTGATGAAGCCTTTGTTATTGGGCGGGGCGGATTTGGCAAGGTCTACAAGGGGTTCATCGATAATGGGACGGTTACTGTTGCTATGAAGCGGTTGGATCCCATGTCCAAGCAGGGTCCCCATGAATTTAGTACCGAGATCAACTTGCTCTCTCAATTTCGACACAGCCACGTCATTTCCCTGATTGGTTATTGCCGCAGCTCGGATGAAATGATCCTTGTTTATGAATATATGGTCCGTGGAAGCCTAGCTGATCATTTGTACAAAAGAAGTGGTAAAAACAGTAATAGTATTAGTCTATCTTGGGTAGAACGCATCAAGATTTGCATTGGGGCCGCACGTGGATTGGATTATCTTCACACCGGTACAGGTGTCAAGAGTAGAGTCATACAACGCGATGTGAAGAGCGCCAACATCTTATTGGATGAGAATTGGACAGCTAAGATTTCAGACTTTGGCTTAGCTAAGATTGGTCCAGCGAATCAGTCGTGCACGCACGTCAGCACCAATGTTAAAGGCACGTTCGGATATTTAGACCCAGAGTATTTCTTGACCAATAGACTGACGAGGAAATCTGACGTTTACGCCTTTGGGGTTGTATTGTTAGAAGTGTTATGTGGCAGGCGGGCAGTGGATTCGAAACTCAACTATGAGCAACGGGGTCTTGCTGTATGGGCACAGAATTGCATTAAAGAAGGATTAGTTGATCAAATTGTTGATCCTTGTTTGAGGGGGCAAATCTTGCCGGATTCTATGAAGGTGTTTGTGGAAATTGCGGGCCAATGCTCGCAAAGTCATCCAAAAAAACGGCCTACAATGGCCGAGGTTGTGGCTGCACTTGAGTCTACCTTGGCCTTGCAATTGAAAACCGATTCTTCAGTGCTTGAGTGGGACATTTTTAATAGTGGGCCATTTGGCAACGAAGGGAGTGTGGGTTCTTCTGCAGAACAAGAAGAGGGTATAAATGCTGGTAATGCTGGGGATCAGAATATACAGTTAAGTGAAGCAAGTAGTGAACAATCTCGTGTGAAGACAAACAAGATAACGGCATTTAGTAGACTGGTGCTGTCTCTTTTTGGCACAGATCGTGTCACCTCAGTGAACTCTGCTGCAAAGCTATCAAAGAACAGCAACACCAACACAGGCTCTGATCATCAAGTGCCTCCAAATTTTAAATTGTTCACTTATACTGAACTGAAAATGGCCACACGGAACTTCAGTGCAAATTTTCAGTTGGGTGAGGGTAGTTCTCAATCGGATTTCATAGGTTGGATTGATGAGAAATCGTATGAACTGTCGAAGGTTGGGGTCGGAATGGCTGTTGCCATTAAGAAATTCGATCTAGAAGGCTTTGAAGAATTTATAGGATGGCAGCCTGAGGTGAAATTCTTGGGAACATTTAGCCATCCGAATCTTGTTAGTGTGATAGGATGCTGCTTTAAACACAAGGAAGTCTTCCTCGTTTATGAATACCTGCAGAACAGGAGCTTAGAAAGATTCCTTTTCGAAAAAGATTCAAAGCCACTTCCGTGGGATACAAGGCTTAAAATAGCCACGGGAGCAGCTCGAGGCCTTGCTTTCTTGCGCACAACAGAAAAGCAAATCATTTATCGCTCATTTAGGACTTCCAATATATTGCTAGATGGGGATTTTAATGCAAAGCTTTCGAATTTCGAACAAACCAAGTTAGGTCCAATCAACGGCTATACATACATTGATTCATACAATCCAACATTGGTTATCGAAGATATGGAGGACCACGCTTATGTAGCTCCCGAATGCCTAACCAATGGTCATTTGAGTGAGAAGAGCGGCGTTTATCGCTTTGGAGTAGTGTTGCTGGAAATAATGGCAGGCCGACGGGCAACTAGTGCGATTAGGCCTGGCATTGAGGAAATTTCGCTAAACTGGGCGAGGAATCAGTTTGAGAGAAAGCTGAAGAAAGCAATGGACCCACGTCTGAGAGACGATTATCCTCTCGAAGGTGCATTCCAATTTGCTTTGCTTGTACAACAATGTCTTGAAATTAGCCCACAATGGCGGCCGTCAATGAAAGAAGTGTTGGAGACTTTAGAAGATATCAATACCGTGAAAATTACCAAAGTCGAATGA

Network for GWHGAAZE011701

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	132	406	2.00E-44
PF07714.18	PK_Tyr_Ser-Thr	559	817	9.30E-30

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.273
	SRR3591706	second leaf	0.176
	SRR3591707	mature leaf	0.281
	SRR3591708	Shoot apex	0.156
	SRR3591709	Stem	0.265
	SRR3591710	White floral bud	0.070
	SRR3591711	White flower	0.315
	SRR3591712	Green floral bud	0.062
	SRR3591713	Yellow flower	0.082
SRP173429	SRR8316895	Juvenile bud stage	0.424
	SRR8316896	Juvenile bud stage	0.550
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.289
	SRR8316900	Third green stage	0.998
	SRR8316901	Third green stage	1.280
	SRR8316898	Complete white stage	0.157
	SRR8316899	Complete white stage	1.586
	SRR8316903	Complete white stage	0.280
	SRR8316902	Silver flowering stage	0.144
	SRR8316904	Silver flowering stage	0.548
	SRR8316905	Silver flowering stage	0.271
	SRR8316906	Gold flowering stage	1.888
	SRR8316907	Gold flowering stage	0.717
	SRR8316908	Gold flowering stage	0.316
SRP132670	SRR6706286	Control	2.177
	SRR6706287	Light intensity 50%	3.064
	SRR6706288	Light intensity 20%	3.009
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.384
	CNS0095593	Slightly white alabastrum(diploid) 2	1.567
	CNS0095594	Slightly white alabastrum(diploid) 3	0.975
	CNS0095595	Whole white alabastrum(diploid) 2	1.184
	CNS0095596	Whole white alabastrum(diploid) 3	0.961
	CNS0095597	Whole white alabastrum(diploid) 4	1.181
	CNS0095598	Silvery flower (diploied) 1	3.363
	CNS0095599	Silvery flower (diploied) 2	1.498
	CNS0095600	Silvery flower (diploied) 3	0.902
	CNS0095601	Golden flower (diploid) 1	2.456
	CNS0095602	Golden flower (diploid) 2	1.959
	CNS0095603	Golden flower (diploid) 3	2.310
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.062
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.072
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.052
	CNS0095610	Silvery flower (diploied) 1	0.084
	CNS0095611	Silvery flower (diploied) 2	0.080
	CNS0095612	Silvery flower (diploied) 3	0.037
	CNS0095613	Golden flower (tetraploid) 1	0.045
	CNS0095614	Golden flower (tetraploid) 2	0.043
	CNS0095615	Golden flower (tetraploid) 3	0.026
CRA001975	CRR073297	Stem 1	1.180
	CRR073298	Stem 2	1.239
	CRR073299	Stem 3	0.814
	CRR073300	Leaf 1	1.492
	CRR073301	Leaf 2	1.326
	CRR073302	Leaf 3	0.503
	CRR073303	Juvenile bud 1	0.405
	CRR073304	Juvenile bud 2	1.047
	CRR073305	Juvenile bud 3	1.292
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.025
	CRR073308	Third green 3	0.045
	CRR073309	Second white 1	0.330
	CRR073310	Second white 2	0.127
	CRR073311	Second white 3	0.107
	CRR073312	Silver flowering 1	0.182
	CRR073313	Silver flowering 2	0.182
	CRR073314	Silver flowering 3	0.068
	CRR073315	Gold flowering 1	5.820
	CRR073316	Gold flowering 2	10.545
	CRR073317	Gold flowering 3	3.711
	CRR073318	Tawny withering 1	3.313
	CRR073319	Tawny withering 2	6.099
	CRR073320	Tawny withering 3	2.886