Gene detail

Detail information of GWHGAAZE011702

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006354974.1	0	PREDICTED: receptor-like protein kinase FERONIA-like [Solanum tuberosum]
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	2E-107	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|M1APN7\|M1APN7_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400027429}
TAIR10	AT3G51550.1	3E-95	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	71709412	71713860	-
GWHAAZE00000003	mRNA	71709412	71713860	-
GWHAAZE00000003	exon	71709412	71709731	-
GWHAAZE00000003	exon	71710300	71710444	-
GWHAAZE00000003	exon	71710559	71710695	-
GWHAAZE00000003	exon	71710881	71711016	-
GWHAAZE00000003	exon	71711621	71711895	-
GWHAAZE00000003	exon	71712606	71713860	-
GWHAAZE00000003	CDS	71712606	71713860	-
GWHAAZE00000003	CDS	71711621	71711895	-
GWHAAZE00000003	CDS	71710881	71711016	-
GWHAAZE00000003	CDS	71710559	71710695	-
GWHAAZE00000003	CDS	71710300	71710444	-
GWHAAZE00000003	CDS	71709412	71709731	-

Transcript Sequence
>GWHTAAZE011714 ATGACTTCATTGAATGTTGTTGTTTATAAGTTGCGGCAAATTCAAGAAGCAAACCTTTACGAGAGACTAAATGATCTGTCGTTGTTGCCTTCAGAAAAAGTATGCCGCCGCTTTTCACTGGATGATATTATTTCCGCCACCAATGGCTTTGATGAAGCCTTGGTTATTGGGCGGGGCGGATTTGGCAAGGTCTACAAGGGGGTCATCGATAATGGGACAGTCACTGTTGCTATAAAGCGGTTGGATCCCACGTCCAAGCAGGGTCCCCATGAATTTAGTACCGAGATCAACTTGCTTTCTCGATTTCGACACAGCCACGTCATTTCTCTAATCGGTTATTGCCATAGCTCAGATGAAATGATCCTTGTCTATGAATATATGGTCCGTGGAAGCCTAGCTGATCATTTGTACAAAAGAAGTGGTAAAAACAGTAATACTAGTAATAGTACTAGTCTATCTTGGGTAGAACGCATCAAGATTTGCATTGGGGCTGCACGTGGATTGGACTATCTTCATACCGGCACTGGTGTCAAGAGTAGAGTCATACAGCGCGACGTGAAGAGTGCCAACATCTTATTGGACGAGAATTGGACGGCTAAGATTTCAGACTTTGGGTTAGCTAAGATTGGCCCGGCAAATCAGTCGTGCACGCACGTCAGCACCAATGTTAAAGGCACGTTCGGATATTTGGACCCAGAGTATTTCTTGACCCATAGACTGACGAGGAAAGCTGACGTTTACGCCTTTGGGGTTGTATTGTTAGAAGTGTTATGTGGGAGGCGGGCAGTGGATTCGAAACTCAATTATGAGCAACGGAGTCTTGCTGGATGGGCTCAGAATTGCATTAAAGAAGGATTAGTAGATCAAATTGTTGATCCGTGTTTGAGGGGGCAAATCTTGCCAGATTCTACGAAGGAGTTTGTGCAAATTGTGGGCCAATGCTTGCATAGTCATCCAAAAGAACGGCCTACAATGGCCGAGGTTGTCGCTGCACTTGAGTCTACCTTGGCCTTGCAATTGAAAACAGATTCTTCGGTGCTTGAGTGGGACATTTTTAGTAGTGGTCCATTTGGCAACGAAGAGAGTGTGGGTTCTTCTGCAGAACAAGAAGAGGGTATAAATGCTCGTAATGCTGGGGATCAGAATATACAGTTAAGTGAAGCAAGTAGTGAGCAATCTCGTGTGAAGACAAACAAGATAACGGCGTTTAGTAGACTGGTGCTGTCTCTTTTTGGCACAGATCGAGTCACCTCAGTGAACTCTGCTGCAAAGCTATCAAAGAACAGCAAAACCAACAAAGGCTCTGATCATCAAGTGCCTCCAAATTTTAAATTGTTCACTTATACTGAACTGAAAACGGCCACACGGAACTTCAGTGCAAATTTTCAGTTGGGTGAGGGTAGTTCTCAATCGGATTTCATAGGTTGGATTGATGAGAAATCGTATGAACTGTCGAAGGTTGGGGTTGGAATGGCTGTTGCCATTAAGAAATTCGATCTAGAAGGCTTTGAAGAATTTATAGGATGGCAGCCTGAGCTGGAATTCTTGGGAAAATTTAGCCATCCAAATCTTGTTAGCGTGATAGGATGCTGCTTTAAGCACAAGGAAGTCTTCCTCGTTTACGAATACCTGCAGAACAGGAGCTTAGAAAGATTCCTTTTCGAAAAAGTTTCAAAACCACTTCCGTGGGATACAAGGCTTAAAATAGCCACGGGAGCAGCTCGAGGCCTTGCTTTCTTGCGCAAAACAGAAAAGCAAATCATTTATCGCTCATTTAGGACTTCCAATATATTGCTAGATGGGGATTTTAATGCAAAGCTTTCGAATTTCGAACAAACTAAGTTAGGTCCAATCAACGGCTACACATACATTGATTCATACCATCCACCATCGGTTATCGAAGATATGGAGAACCATGCTTATGTAGCTCCCGAATGCCTAACCAATGGTCATTTGAGTGAGAAGAGCGACGTTTATCGCTTTGGAGTAGTGTTGCTGGAAATAATGGCAGGCCGACGGGCAACTAACGCGATTAGGCCTGGCACTGAGGAAATTTCGCTAAACTGGGCGAGGAATCAGTTTGAGAGAAAGCTGAAGAAAGCAATGGACCCACGTCTGAGAGACGATTACCCTCTCGAAGGTGCATTCCAATTTGCTTTGCTTGTACAACAATGTCTTGAAATTAGCCCGCAATGGCGGCCGTCGATGAAAGAAGTGTTGGAGACTTTAGAAGATATCAATACCGTGAAAATTACCAAAGTCGAATGA

Network for GWHGAAZE011702

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	55	332	1.60E-46
PF07714.18	PK_Tyr_Ser-Thr	485	743	2.20E-31

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.156
	SRR3591706	second leaf	2.683
	SRR3591707	mature leaf	4.105
	SRR3591708	Shoot apex	1.954
	SRR3591709	Stem	3.477
	SRR3591710	White floral bud	2.697
	SRR3591711	White flower	4.271
	SRR3591712	Green floral bud	0.846
	SRR3591713	Yellow flower	2.215
SRP173429	SRR8316895	Juvenile bud stage	1.261
	SRR8316896	Juvenile bud stage	1.046
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.665
	SRR8316900	Third green stage	0.802
	SRR8316901	Third green stage	0.595
	SRR8316898	Complete white stage	0.164
	SRR8316899	Complete white stage	1.981
	SRR8316903	Complete white stage	0.541
	SRR8316902	Silver flowering stage	0.303
	SRR8316904	Silver flowering stage	0.434
	SRR8316905	Silver flowering stage	0.303
	SRR8316906	Gold flowering stage	1.018
	SRR8316907	Gold flowering stage	0.521
	SRR8316908	Gold flowering stage	0.366
SRP132670	SRR6706286	Control	2.218
	SRR6706287	Light intensity 50%	1.976
	SRR6706288	Light intensity 20%	1.863
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.236
	CNS0095593	Slightly white alabastrum(diploid) 2	1.005
	CNS0095594	Slightly white alabastrum(diploid) 3	1.214
	CNS0095595	Whole white alabastrum(diploid) 2	0.824
	CNS0095596	Whole white alabastrum(diploid) 3	0.260
	CNS0095597	Whole white alabastrum(diploid) 4	0.877
	CNS0095598	Silvery flower (diploied) 1	2.539
	CNS0095599	Silvery flower (diploied) 2	1.808
	CNS0095600	Silvery flower (diploied) 3	1.000
	CNS0095601	Golden flower (diploid) 1	2.393
	CNS0095602	Golden flower (diploid) 2	1.768
	CNS0095603	Golden flower (diploid) 3	1.580
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.205
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.476
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.207
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.177
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.123
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.593
	CNS0095610	Silvery flower (diploied) 1	0.946
	CNS0095611	Silvery flower (diploied) 2	0.631
	CNS0095612	Silvery flower (diploied) 3	0.320
	CNS0095613	Golden flower (tetraploid) 1	0.738
	CNS0095614	Golden flower (tetraploid) 2	0.826
	CNS0095615	Golden flower (tetraploid) 3	0.570
CRA001975	CRR073297	Stem 1	1.333
	CRR073298	Stem 2	1.605
	CRR073299	Stem 3	1.278
	CRR073300	Leaf 1	0.657
	CRR073301	Leaf 2	1.006
	CRR073302	Leaf 3	0.759
	CRR073303	Juvenile bud 1	0.615
	CRR073304	Juvenile bud 2	0.216
	CRR073305	Juvenile bud 3	0.321
	CRR073306	Third green 1	0.045
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.204
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.052
	CRR073311	Second white 3	0.137
	CRR073312	Silver flowering 1	0.065
	CRR073313	Silver flowering 2	0.044
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.663
	CRR073316	Gold flowering 2	4.466
	CRR073317	Gold flowering 3	1.886
	CRR073318	Tawny withering 1	2.190
	CRR073319	Tawny withering 2	3.612
	CRR073320	Tawny withering 3	1.559