Gene detail

Detail information of GWHGAAZE011735

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006489476.1	PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type-like [Citrus sinensis]
Swissprot	tr\|Q9LY77\|ACA12_ARATH	Calcium-transporting ATPase 12, plasma membrane-type
trEMBL	tr\|A0A061EMF0\|A0A061EMF0_THECC	Calcium-transporting ATPase {ECO:0000256\|RuleBase:RU361146}
TAIR10	AT3G63380.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	72252329	72255397	+
GWHAAZE00000003	mRNA	72252329	72255397	+
GWHAAZE00000003	exon	72252329	72255397	+
GWHAAZE00000003	CDS	72252329	72255397	+

Transcript Sequence
>GWHTAAZE011747 ATGGCTGCTACTGTATTACTTCATGGAAACATACGTTCCATTAAGTCATTACTTGACATGCCCACCATTAATCAACTTAGCAAGCTCAACAGAAAAAGATGGAACATGGCTTTCCAAATCATCTATTGTTCGAGAGCTTTTTTCACCCCAAAAAAGTCCAAAGCTTCGCCCCCGCCATCTTACAGGCTACTCACCATTGATGTCGAACACCAAAAGCACTCTTATTTCCCCACTATCGATCAAGCCACCCTCACACATCTTGTCAAGGAGAAAAAGTTGGACAGCCTTTTGAAATTCAAAGGAGTTGAAGGCATTGCTTCATCTGTCAAAACCGACTTGAACTGCGGTATAAGTGCCGATGTTGAAGATATTCAGCGTCGGCAAGAAGCTTTCGGGGAGAATATGTTTCACAAGCCGCCTGCTAAGAGTTTTTTCCAGTTTGTATACGAGGCTTTCAAAGATCCGACGATTCTAATCCTCTTAGTTTGTGCTGGCCTTTCTTTGGGGTTCGGCATGAAAGAGGATGGGCCAAAAGAAGGATGGTACGACGGAGGGAGCATATTTGTAGCGGTGTTTTTGGTCATATCTGTCTCGGCTATCAGCAACTTCAGGCAAAGCAGGCAATTCGACAAGTTGTCGAAAGTGAGCAACAATATACAGGTGGAGGTTGTGAGAAATGGGAGGCGGCAATATGTTTCGGTTTTTGCGGTTGTAGTTGGAGATGTTGTGTGCTTAAAGATAGGCGATCAAGTGCCGGCTGACGGACTATTCCTAAATGGACACTCATTGACCGTGGATGAATCAAGCATGACAGGTGAAAGCGACTATGTCCAAGTAAACCATGTCGAAAATCCATTCTTGTTTTCCGGCACAAAGGTGGCTTACGGGTATGCTAGAATGCTTGTGACTTCAGTCGGGATGAACACGTCGTGGGGCCAGATGATGAGCATGACTAGCATTGATACTGACGAGCCAACCCCACTACAGGAGCGGCTCAACAAGCTTACTTCATCGATAGGCAAGGTTGGACTATTGGTGGCATTTTTAGTTCTTTTGGTGTTGTTGATTCGGTATTTTACGGGGAATACAGAGGACGAGAACGGGAACACCGAGTTTCGTGGAGGTAAAACAAAGGTCGATGATGTGATCAATGCTATGGTGGGGATTATTGCTGCTGCAGTAACTATTGTGGTGGTTGCAATACCTGAAGGGTTACCGTTAGCGGTGACACTTACACTTGCTTATTCCATGAAGAGAATGATGGCGGATCAGGCTATGGTGAGGAAACTTTCTGCTTGTGAGACCATGGGCTCTGCCACCATTATATGCACGGATAAAACAGGCACACTCACAATGAACAAGATGAAGGTGACAAAGTTTTGGGTTGGGCAAGATTCTATGGAAGAAATAAATTATACCTCTATTTCTGTTAATTTTCTTGAATTGATTCATCAAGGAGTTGGGTTAAATACAACTGGAAATGTATACAAGCCTGCCTCTGGATCCGAGTTTGAGTTCTCAGGCAGTCCCACCGAGAAAGCAATACTTTCTTTTGCAGTCCTCGAACTGAACATGAATTTAGAGGAGCTGGAACAAAGTTGTACTCTGCTGAAAGTGGAAGCTTTTAACTCGGAGAAGAAGAGGAGTGGTATTTTGATGAAGAAGAATTCAGACAACACGGTACACGTGCATTGGAAAGGTGCTGCGGAGATGATACTAGCAATGTGCTCTAACTACTATGATTCAAGTGGAGACAAGAAAGCTTTGGATGGTGTCAAAAGGAAGAAGTTCGATCGATTAATCCAAGGTATGGCCGCTAGCAGTCTGCGTTGCATTGCATTTGCACATAAGCAAGTTTCACAAGATGAAATGCCCCTCCAAAATATATACGACAACTCCTTGACCCTATTGGGACTAATGGGTCTAAAGGATCCATGTCGGCCCAGTGCAAAAAAAGCAGTTGAAGATTGTCAAAATGCGGGAGTAAACATCAAAATGATAACCGGGGACAATGTGTTCACGGCAAGAGCAATAGCCACAGAATGCAATATACTTAAGCAGAACCGAGACAATAACAATGGACAAGTGATAGAAGGTGAGCAATTTCGTAACTACACACACGAGGAACGGATGGAGAAGGTTGACAAAATCCGTGTGATGGCGAGATCCTCCCCATTTGACAAGCTTCTAATGGTACAATGCCTTAAGCAGAAAGGACATGTGGTTGCAGTCACTGGTGATGGCACAAATGACGCCCCAGCACTTAAAGAAGCCGATATTGGGCTCTCGATGGGGATCCAAGGAACCGAGGTGGCGAAAGAGAGCTCAGATATTGTTATCTTGGACGATAATTTTGCTTCCGTGGCAACAGTTTTGAGGTGGGGAAGATGTGTCTACAACAACATACAAAAATTCATTCAGTTTCAACTTACAGTGAATGTGGCAGCTTTGGCTATAAACTTTGTAGCAGCAGTGTCAGCAGGTGAAGTGCCATTAACAGCGGTCCAACTTTTGTGGGTAAACCTCATTATGGACACATTAGGTGCACTTGCTCTCGCCACAGAGAAACCAACAAAAGAGCTAATGGACAAGAAGCCTGTGGGTCGATCAGAGCCGCTCATTACCAATATCATGTGGAGGAACCTGATAGCTCAATCTTTTTATCAGATAATCATCTTACTTACGTTGCAATTTGAAGGAGAAGAGATTTTTGGCGTCAACAAGAGAGTGAAGGACACTTTAATCTTCAATACCTTTGTCCTGTGTCAAGTCTTCAACGAGTTCAACGCAAGGAAGCCCGAGAAGAAGAATATCTTTGAGGGGATTCATAAGAACAAGCTTTTCATGGGAATCATTGGGGTGACGATCGTTCTTCAAGTGGTAATGGTTGAATTTCTAAAGAAGTTTGCTGATACAGAGAGACTTAACTGGGGCCAATGGGGAGCATGTATTGGACTTGCTTCTATATCATGGCCAATTGGTTTTCTTGTGAAGTATGTACCTGTTCCAGAGAAACCATTCTTCAGTTTTCTTAGTTGGCAGAAGTTAAAGTACATGTATAAAAGATAA

Network for GWHGAAZE011735

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0096	GO:0070588 calcium ion transmembrane transport GOslim:biological_process GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism GOslim:molecular_function GO:0000166 nucleotide binding GOslim:molecular_function

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00690.27	Cation_ATPase_N	100	167	1.60E-13
PF00122.21	E1-E2_ATPase	220	421	5.60E-39
PF00702.27	Hydrolase	441	759	2.60E-17
PF00689.22	Cation_ATPase_C	830	1000	9.80E-49

Protein Sequence

>GWHPAAZE011741
MAATVLLHGNIRSIKSLLDMPTINQLSKLNRKRWNMAFQIIYCSRAFFTPKKSKASPPPSYRLLTIDVEHQKHSYFPTIDQATLTHLVKEKKLDSLLKFKGVEGIASSVKTDLNCGISADVEDIQRRQEAFGENMFHKPPAKSFFQFVYEAFKDPTILILLVCAGLSLGFGMKEDGPKEGWYDGGSIFVAVFLVISVSAISNFRQSRQFDKLSKVSNNIQVEVVRNGRRQYVSVFAVVVGDVVCLKIGDQVPADGLFLNGHSLTVDESSMTGESDYVQVNHVENPFLFSGTKVAYGYARMLVTSVGMNTSWGQMMSMTSIDTDEPTPLQERLNKLTSSIGKVGLLVAFLVLLVLLIRYFTGNTEDENGNTEFRGGKTKVDDVINAMVGIIAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRKLSACETMGSATIICTDKTGTLTMNKMKVTKFWVGQDSMEEINYTSISVNFLELIHQGVGLNTTGNVYKPASGSEFEFSGSPTEKAILSFAVLELNMNLEELEQSCTLLKVEAFNSEKKRSGILMKKNSDNTVHVHWKGAAEMILAMCSNYYDSSGDKKALDGVKRKKFDRLIQGMAASSLRCIAFAHKQVSQDEMPLQNIYDNSLTLLGLMGLKDPCRPSAKKAVEDCQNAGVNIKMITGDNVFTARAIATECNILKQNRDNNNGQVIEGEQFRNYTHEERMEKVDKIRVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASVATVLRWGRCVYNNIQKFIQFQLTVNVAALAINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTKELMDKKPVGRSEPLITNIMWRNLIAQSFYQIIILLTLQFEGEEIFGVNKRVKDTLIFNTFVLCQVFNEFNARKPEKKNIFEGIHKNKLFMGIIGVTIVLQVVMVEFLKKFADTERLNWGQWGACIGLASISWPIGFLVKYVPVPEKPFFSFLSWQKLKYMYKR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0070588	biological_process	calcium ion transmembrane transport
GO:0016020	cellular_component	membrane
GO:0016021	cellular_component	integral component of membrane
GO:0000166	molecular_function	nucleotide binding
GO:0005388	molecular_function	calcium transmembrane transporter activity, phosphorylative mechanism
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.501
	SRR3591706	second leaf	0.552
	SRR3591707	mature leaf	0.460
	SRR3591708	Shoot apex	0.258
	SRR3591709	Stem	2.542
	SRR3591710	White floral bud	0.643
	SRR3591711	White flower	0.542
	SRR3591712	Green floral bud	0.502
	SRR3591713	Yellow flower	0.050
SRP173429	SRR8316895	Juvenile bud stage	0.259
	SRR8316896	Juvenile bud stage	0.175
	SRR8316897	Juvenile bud stage	0.112
	SRR8316894	Third green stage	0.127
	SRR8316900	Third green stage	0.025
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.033
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.045
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.052
	SRR8316907	Gold flowering stage	0.028
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.025
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.148
	CNS0095593	Slightly white alabastrum(diploid) 2	0.731
	CNS0095594	Slightly white alabastrum(diploid) 3	0.708
	CNS0095595	Whole white alabastrum(diploid) 2	0.389
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.367
	CNS0095599	Silvery flower (diploied) 2	0.973
	CNS0095600	Silvery flower (diploied) 3	0.142
	CNS0095601	Golden flower (diploid) 1	0.765
	CNS0095602	Golden flower (diploid) 2	0.269
	CNS0095603	Golden flower (diploid) 3	0.200
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.021
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.033
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.038
	CNS0095612	Silvery flower (diploied) 3	0.056
	CNS0095613	Golden flower (tetraploid) 1	0.122
	CNS0095614	Golden flower (tetraploid) 2	0.052
	CNS0095615	Golden flower (tetraploid) 3	0.085
CRA001975	CRR073297	Stem 1	0.015
	CRR073298	Stem 2	0.108
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.087
	CRR073301	Leaf 2	0.163
	CRR073302	Leaf 3	0.053
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.012
	CRR073305	Juvenile bud 3	0.211
	CRR073306	Third green 1	0.236
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.134
	CRR073309	Second white 1	2.714
	CRR073310	Second white 2	1.586
	CRR073311	Second white 3	4.688
	CRR073312	Silver flowering 1	6.709
	CRR073313	Silver flowering 2	5.618
	CRR073314	Silver flowering 3	5.698
	CRR073315	Gold flowering 1	0.020
	CRR073316	Gold flowering 2	0.414
	CRR073317	Gold flowering 3	0.265
	CRR073318	Tawny withering 1	2.832
	CRR073319	Tawny withering 2	4.101
	CRR073320	Tawny withering 3	4.193