Gene detail

Detail information of GWHGAAZE011803

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002311629.1	0	O-acetylserine (thiol)lyase family protein [Populus trichocarpa]
Swissprot	tr\|O81154\|CYSK_SOLTU	0	Cysteine synthase
trEMBL	tr\|B9HJY5\|B9HJY5_POPTR	0	Cysteine synthase {ECO:0000256\|RuleBase:RU003985}
TAIR10	AT4G14880.4	6E-136	O-acetylserine (thiol) lyase (OAS-TL) isoform A1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	73417955	73422790	-
GWHAAZE00000003	mRNA	73417955	73422790	-
GWHAAZE00000003	exon	73417955	73418047	-
GWHAAZE00000003	exon	73418671	73418751	-
GWHAAZE00000003	exon	73418898	73418957	-
GWHAAZE00000003	exon	73419494	73419573	-
GWHAAZE00000003	exon	73421308	73421359	-
GWHAAZE00000003	exon	73421488	73421625	-
GWHAAZE00000003	exon	73421702	73421965	-
GWHAAZE00000003	exon	73422377	73422434	-
GWHAAZE00000003	exon	73422544	73422653	-
GWHAAZE00000003	exon	73422749	73422790	-
GWHAAZE00000003	CDS	73422749	73422790	-
GWHAAZE00000003	CDS	73422544	73422653	-
GWHAAZE00000003	CDS	73422377	73422434	-
GWHAAZE00000003	CDS	73421702	73421965	-
GWHAAZE00000003	CDS	73421488	73421625	-
GWHAAZE00000003	CDS	73421308	73421359	-
GWHAAZE00000003	CDS	73419494	73419573	-
GWHAAZE00000003	CDS	73418898	73418957	-
GWHAAZE00000003	CDS	73418671	73418751	-
GWHAAZE00000003	CDS	73417955	73418047	-

Transcript Sequence
>GWHTAAZE011815 ATGGCGGAAGAGAAGTGTGGAATTGCGAAGGATGTTACTGAATTGATTGGTAAAACTCCATTGGTATATCTCAATAATGTTGTAGACGGTTGTGTTGGGCGTATTGCAGCCAAATTAGAAATGATGGAACCATGTTCTAGTGTTAAAGACAGGATCGGTTATAGTATGATTGCAGATGCTGAGGCAAAGGGCCTTATCACACCAGGGGAGAGTGTCCTTGTTGAACCTACAAGTGGCAACACTGGGATTGGATTAGCCTTCATGGCAGCAGCTAAGGGTTACAAGCTCATCATTACGATGCCTGCTTCTATGAGTCTTGAAAGGAGAATTATACTCCGTGCTTTTGGCGCTGAGTTGGTGCTCACAGATCCTGCTAAGGGAATGAAAGGTGCTGTCCAGAAGGCTGAGGAGATATTGGCTAAAACACCTAATGCGTATATTCTTCAGCAGTTTGAAAACCCTTCAAACCCAAAAGTACATTATGAAACCACTGGACCAGAGATTTGGAAAGGCTCAAATGGGAAAATTGATGCCTTAATTTCTGGTATTGGTACCGGGGGAACTATAACTGGTGCAGGAAAGTTCCTCAAAGAGCAGAACCCTGACATAAAGCTGTACGGTATAGAGCCCGTTGAAAGTCCTATTCTATCTGGAGGAAAGCCTGGCCCACATAAGATCCAGGGAATTGGTGCTGGTTTTATACCTGGAGTTTTGGATGTTAGTATCATTGACGAAGTAATTCAAATTTCAAGTGAAGAAGCCATAGAAACTGCAAAGCTTCTTGCCCTGAAGGAAGGGTTACTGGTGGGAATATCATCTGGTGCTGCAGCAGCTGCTGCTATTAAGGTTGCAAAGAGGCCAGAGAGTGCTGGAAAGCTGATAGTTGTGGTTTTTCCAAGCTTTGGGGAGCGGTATCTTTCGTCTGTGCTCTTTGAATCAGTAAGACGGGAGGCAGAGACCATGACTTTTGAGCCCTGA

Network for GWHGAAZE011803

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00291.26	PALP	13	299	4.10E-67

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01738	cysK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Sulfur metabolism	map00920
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0006535	biological_process	cysteine biosynthetic process from serine
GO:0004124	molecular_function	cysteine synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	51.923
	SRR3591706	second leaf	14.095
	SRR3591707	mature leaf	20.552
	SRR3591708	Shoot apex	27.003
	SRR3591709	Stem	69.356
	SRR3591710	White floral bud	27.178
	SRR3591711	White flower	25.683
	SRR3591712	Green floral bud	16.940
	SRR3591713	Yellow flower	22.024
SRP173429	SRR8316895	Juvenile bud stage	11.943
	SRR8316896	Juvenile bud stage	20.076
	SRR8316897	Juvenile bud stage	11.393
	SRR8316894	Third green stage	7.047
	SRR8316900	Third green stage	20.066
	SRR8316901	Third green stage	20.248
	SRR8316898	Complete white stage	16.145
	SRR8316899	Complete white stage	46.814
	SRR8316903	Complete white stage	27.901
	SRR8316902	Silver flowering stage	25.004
	SRR8316904	Silver flowering stage	31.212
	SRR8316905	Silver flowering stage	20.569
	SRR8316906	Gold flowering stage	58.810
	SRR8316907	Gold flowering stage	62.477
	SRR8316908	Gold flowering stage	84.239
SRP132670	SRR6706286	Control	23.263
	SRR6706287	Light intensity 50%	20.193
	SRR6706288	Light intensity 20%	22.475
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.204
	CNS0095593	Slightly white alabastrum(diploid) 2	14.528
	CNS0095594	Slightly white alabastrum(diploid) 3	14.385
	CNS0095595	Whole white alabastrum(diploid) 2	11.607
	CNS0095596	Whole white alabastrum(diploid) 3	12.100
	CNS0095597	Whole white alabastrum(diploid) 4	10.207
	CNS0095598	Silvery flower (diploied) 1	15.866
	CNS0095599	Silvery flower (diploied) 2	20.296
	CNS0095600	Silvery flower (diploied) 3	43.369
	CNS0095601	Golden flower (diploid) 1	16.495
	CNS0095602	Golden flower (diploid) 2	33.014
	CNS0095603	Golden flower (diploid) 3	30.888
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.551
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.835
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.440
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.102
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.422
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.368
	CNS0095610	Silvery flower (diploied) 1	71.112
	CNS0095611	Silvery flower (diploied) 2	74.368
	CNS0095612	Silvery flower (diploied) 3	56.792
	CNS0095613	Golden flower (tetraploid) 1	56.624
	CNS0095614	Golden flower (tetraploid) 2	67.192
	CNS0095615	Golden flower (tetraploid) 3	69.997
CRA001975	CRR073297	Stem 1	10.518
	CRR073298	Stem 2	8.310
	CRR073299	Stem 3	9.576
	CRR073300	Leaf 1	12.394
	CRR073301	Leaf 2	14.946
	CRR073302	Leaf 3	10.506
	CRR073303	Juvenile bud 1	19.054
	CRR073304	Juvenile bud 2	12.736
	CRR073305	Juvenile bud 3	17.953
	CRR073306	Third green 1	20.226
	CRR073307	Third green 2	24.103
	CRR073308	Third green 3	23.294
	CRR073309	Second white 1	21.087
	CRR073310	Second white 2	19.437
	CRR073311	Second white 3	14.707
	CRR073312	Silver flowering 1	10.116
	CRR073313	Silver flowering 2	10.625
	CRR073314	Silver flowering 3	11.087
	CRR073315	Gold flowering 1	7.326
	CRR073316	Gold flowering 2	9.309
	CRR073317	Gold flowering 3	5.688
	CRR073318	Tawny withering 1	38.824
	CRR073319	Tawny withering 2	30.937
	CRR073320	Tawny withering 3	38.266