Gene detail

Detail information of GWHGAAZE011872

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011088708.1	0	PREDICTED: putative receptor-like protein kinase At5g39000 isoform X1 [Sesamum indicum]
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	7E-107	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|M1APN7\|M1APN7_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400027429}
TAIR10	AT3G51550.1	2E-93	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	74434517	74441131	-
GWHAAZE00000003	mRNA	74434517	74441131	-
GWHAAZE00000003	exon	74434517	74434824	-
GWHAAZE00000003	exon	74435303	74435441	-
GWHAAZE00000003	exon	74435537	74435673	-
GWHAAZE00000003	exon	74436506	74436641	-
GWHAAZE00000003	exon	74437551	74437867	-
GWHAAZE00000003	exon	74439571	74441131	-
GWHAAZE00000003	CDS	74439571	74441131	-
GWHAAZE00000003	CDS	74437551	74437867	-
GWHAAZE00000003	CDS	74436506	74436641	-
GWHAAZE00000003	CDS	74435537	74435673	-
GWHAAZE00000003	CDS	74435303	74435441	-
GWHAAZE00000003	CDS	74434517	74434824	-

Transcript Sequence
>GWHTAAZE011884 ATGTTCCATCTTCAGCTTCCAGTTCTCATCCTTCTCTACTTGTTCTTCATCCTCAATCATTCTATTCTTTGCTTCTCAGGTAATTTTCCAACTCCCAATTCTCCTTATGATAATATTGCCAATTATGACTACCCGAGTTCCATGCCTTTGGCTCCAAAGCAACGGAAAATAGTTTTTGGGCGTGTAAACACAGTTGCAACAGTTGTGACAATCTTACTTGCTCTCTTGAATATCGTTGTTTATAAGTTGCGAAAACTTCAAGAATCAAGCTTTTATGAGCAATTCAATGTACCACAAGGGCAATTATGCCGTCGCTTTTTGCTTAATGATATCCTATTGGCAACCAACCATTTTGATGATGCATTAGTCATCGGGCAGGGCGGATTTGGGAAGGTATACAAGGGGGTTATTGACAATGGTACGATAACTGTTGCCATAAAGCGGTTAAACCGAACATCCCATCAAGGTGCACCGGAATTTTGGACTGAGGTTGAGATGCTGTCAAAATTTCGACATAGCCATCTCGTCTCTCTAATTGGTTATTGCAACAATTGTAATGAGATGATCCTTGTTTATGAATACATGATTCAGGGGACTCTCGCTGATCATTTGCACAAAATTGGTAAAAATGTTAATAATAATTCCAGTTTATCTTGGGTGCGACGTCTCAAGATTTGCATCGGTGCTGCCCGTGGGTTGGATTACCTTCACACGGGTACTGGTATCCAGCACAGAGTCATACACCGCGATGTGAAGAGCTCAAACATTCTATTGGATGAAAATTGGGCGGCTAAGATTTCGGACTTTGGGTTGTCTAAAACAGGCCCTGCAGATCAATCATGCACCCATATAAGCACTAACGTTAAAGGGACATTTGGGTATCTAGATCCTGAGTATTTCTTGACCCATAGACTGACAAGGAAATCCGATGTTTATGCCTTTGGGGTTGTATTGTTTGAAGTGTTGTGTGGAAGGCGAGCAGTCGATGTAAGACTTGAGGAGGAGCAATGGAGTCTCGCTGGGTGGGCCCAACTATGTGTCAAAGAAGGAAGACTACAAAATATAATTGATCCCAGTTTGAAGTGGGAGATCTTTCCTAACTCTTTGAATGCATTTGCACAAATAGCAAATCAGTGTTTGGATTATAGTGCTAAAAAGCGCCCTACAATGGCCGAGGTTGTGGCCGCACTCGAGTCTGCATTGGCATTGCAACAGAAGCGGAACTCTTCTATGATCGAGATGGAGATATTTGATATATGCAGTAGTCATGAGAACCAAGAAAATGCTGATTCTTCCACAGAACAACAAGAAGTTATTGGTGCTGGTACTGATGGTGTTTGTGAGGAGGAGCAGATTGATGGTATCAATGTTGAGAATTTTGATTCTCGTAAAGGTCAACAGGAGAATTCCTCTAATGTTGTTAATGAAGAGAAGCAGATTGATAAGATTATGGGGTTAGGTGATGCAAACATTAGGTCATCACCGGCAAAGCCTGCCAGGATAGTGGCATTCACAAAAATTGTGCGGCAATTTTTTCATGGGACTGCTCAAGTGACCTCAGTCCATGGAACTGGAAAGCCACCAAATAACGGTAAAAGCAGCAATAAAAATGGGGAAAACGGCAATGGAGATGTCCAGCAATTGCCTCTGAATTTGCAAATGGAGACTCGTCATTTGAAAATTTTCACTTATGAAGAACTGGCAACTGCCACGGGGAACTTTGGATCGAGATTGTTGATAGGCAAAGGAACTTTTGGAAGGGTTTTTAAAGGTTGGGTCGACAAGAAGACATATAGGCCGTCAAAGGATGGCGTAGGGATGGCCGTTGCTGTTAAGAAATTTGATCTGGGAGGCTTTGAAGAATATATAACATGGCAGGCCGAGGTGGAATTATGGGGAAAACTCAGTCATCCAAATATTGTTAATGTCTTGGGATACTGCAAGGAAATGGAGAAATTCCTTGTTGTCTATGAATACATGGAGAGGGGAAGCTTACAAAGACACCTTTTCAACAGTGATGGAAAACCACTATCATGGGGTACAAGGCTTAAAATAGCAATTGGAGCAGCTCGGGGCTTTGCTTTCTTGCACTCGACTGAGAAGCGAGATGTATACCGCCAGTTTAAATCCCATAACATATTGCTGGATTCGGATTTTAGTGCAAAGCTTTCAGATATTCAACTTGCAGAGATAAGTTACTCATTCGCGGATTATTACTTTCCTGGATTCCTTAGGACAATTGTAAGGACATATGATTTTATTGGTGTCCCTCCCGAGTACGTGGCAACTGGTCATTTGAATAAGAGCGGCCACGTCTACTGTTTCGGAGTGGTGTTGTTGGAAATATTAGCAGGCGCCCCAGCGAGTGTTGTGACTAAGCGCAGTGGTAACCGTAGGTTGGTGGATTGTACCCAGAAGTTGGTATCTAGGAAACGGAAGGTCAAGGAGCTAATAGACCAGCGTCTACGAGGCGCCTACCCTATCGAAGACGTATTCCAATATGCTCAACTTACACTGAAGTGCCTCGACCCCCTCCCTAAGAATCGACCGTTGATGGACGAAGTCTTGGAAGCTTTAGAACATATCCACAGGAACTAG

Network for GWHGAAZE011872

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	123	397	9.20E-49
PF07714.18	PK_Tyr_Ser-Thr	580	859	5.50E-33

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.495
	SRR3591706	second leaf	1.670
	SRR3591707	mature leaf	4.186
	SRR3591708	Shoot apex	2.625
	SRR3591709	Stem	2.056
	SRR3591710	White floral bud	1.598
	SRR3591711	White flower	2.536
	SRR3591712	Green floral bud	1.393
	SRR3591713	Yellow flower	1.558
SRP173429	SRR8316895	Juvenile bud stage	2.257
	SRR8316896	Juvenile bud stage	3.622
	SRR8316897	Juvenile bud stage	2.460
	SRR8316894	Third green stage	1.336
	SRR8316900	Third green stage	2.490
	SRR8316901	Third green stage	2.905
	SRR8316898	Complete white stage	0.462
	SRR8316899	Complete white stage	4.982
	SRR8316903	Complete white stage	1.513
	SRR8316902	Silver flowering stage	0.975
	SRR8316904	Silver flowering stage	1.712
	SRR8316905	Silver flowering stage	0.930
	SRR8316906	Gold flowering stage	2.966
	SRR8316907	Gold flowering stage	2.469
	SRR8316908	Gold flowering stage	3.045
SRP132670	SRR6706286	Control	5.183
	SRR6706287	Light intensity 50%	4.200
	SRR6706288	Light intensity 20%	4.657
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.908
	CNS0095593	Slightly white alabastrum(diploid) 2	2.595
	CNS0095594	Slightly white alabastrum(diploid) 3	2.885
	CNS0095595	Whole white alabastrum(diploid) 2	1.855
	CNS0095596	Whole white alabastrum(diploid) 3	1.282
	CNS0095597	Whole white alabastrum(diploid) 4	1.660
	CNS0095598	Silvery flower (diploied) 1	4.823
	CNS0095599	Silvery flower (diploied) 2	3.063
	CNS0095600	Silvery flower (diploied) 3	2.446
	CNS0095601	Golden flower (diploid) 1	3.279
	CNS0095602	Golden flower (diploid) 2	2.726
	CNS0095603	Golden flower (diploid) 3	3.385
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.350
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.590
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.914
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.866
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.310
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.539
	CNS0095610	Silvery flower (diploied) 1	3.240
	CNS0095611	Silvery flower (diploied) 2	1.844
	CNS0095612	Silvery flower (diploied) 3	1.428
	CNS0095613	Golden flower (tetraploid) 1	0.811
	CNS0095614	Golden flower (tetraploid) 2	1.816
	CNS0095615	Golden flower (tetraploid) 3	1.280
CRA001975	CRR073297	Stem 1	3.279
	CRR073298	Stem 2	2.611
	CRR073299	Stem 3	2.462
	CRR073300	Leaf 1	2.342
	CRR073301	Leaf 2	2.522
	CRR073302	Leaf 3	2.113
	CRR073303	Juvenile bud 1	1.772
	CRR073304	Juvenile bud 2	1.568
	CRR073305	Juvenile bud 3	2.302
	CRR073306	Third green 1	0.294
	CRR073307	Third green 2	0.028
	CRR073308	Third green 3	0.209
	CRR073309	Second white 1	0.170
	CRR073310	Second white 2	0.130
	CRR073311	Second white 3	0.427
	CRR073312	Silver flowering 1	0.389
	CRR073313	Silver flowering 2	0.515
	CRR073314	Silver flowering 3	0.883
	CRR073315	Gold flowering 1	2.084
	CRR073316	Gold flowering 2	5.102
	CRR073317	Gold flowering 3	1.278
	CRR073318	Tawny withering 1	2.564
	CRR073319	Tawny withering 2	3.730
	CRR073320	Tawny withering 3	2.456