Gene detail

Detail information of GWHGAAZE011888

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006464190.1	2.55577E-80	PREDICTED: uncharacterized protein LOC102606974 isoform X1 [Citrus sinensis]
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	3E-58	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|A0A061DJJ8\|A0A061DJJ8_THECC	3E-77	Uncharacterized protein isoform 2 {ECO:0000313\|EMBL:EOX92750.1}
TAIR10	AT5G08440.1	6E-55	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	74772829	74775192	-
GWHAAZE00000003	mRNA	74772829	74775192	-
GWHAAZE00000003	exon	74772829	74773406	-
GWHAAZE00000003	exon	74774418	74775192	-
GWHAAZE00000003	CDS	74774418	74775192	-
GWHAAZE00000003	CDS	74772829	74773406	-

Transcript Sequence
>GWHTAAZE011900 ATGAATATATGGTCAACGGGTCTCTTGGCGGATCACTTGTACAAAATTGGCAAGTTTGGTACTTCTAATTTATCTTGGGTGCAGCGTCTCAAGATTTGTCTAGGAGCTGCTCGTGGCTTGGATTACCTCCATACAGGTACCGGTGTTCAAGATAGTGTCATACATCGTGATGTGAAGAGTTCGAACATCCTGTTAGATAAAAATTGCGTAGCTAAAGTTTCAGACTTTGGGTTGTCTAGAATCAATCCTATTGATCAGTCTTGCACTCATATCAGCACAAATGTTAAAGGGACCACGGGGTATGTGGATCCAGAATATATGCTGACCTTCCGATTAACAATGAAATCCGATGTCTACTCATCTGGGGTTGTACTATTTGAAGTGTTGTGTGGAAGGCGAGCGGTGGATTTTACACTTGATAAAGAGCAATGGAGTCTTGCTAGGTGGGTCCAAAGCTGTATTGAAAAAGGAACACTTCATCGTATTATCAATCCTGATTTGTGGTTGGAAATCTTGCCGGAATCTTGGAAGGAGTTTGTGCGAATTGCAAATCAATGCTTACGTTATCGGCCAAAAAAGCGCCCTACAATGACTCAAGTCGTGAGCTCACTCGAGTTGGCATTGGCATTGCAACTAGGACACAGAGATTCTTCTGCATTTGAAATGGACATTACTTATACAAGTGAGGCAGATGAAATCATACGAAAGGTTGATTCAACAATGGTACAAGACGAAATGCAACCGTTTATGTTATCGACCGTTGCTGACGCATCAGTTCTTGAAGAGGCTTCTCCCTCCTCCTCCGAGCCTGCAGATGATGATCCATTACCTGCAGTAGTGGACCTCCAAATTTCTGGTGAACCTTTTCCGGGACGGGAGCTACAAGTAAGCGGATTTTCTACTAATGGAACAAGAAGTTGTAATTTTGAGTGGGTGCGACATTTGGAAGATGGCTCTTTTAAGTACGTAGATGGGGAAAAACAACCAATCTATTTTGTTGGCGCGGATGATGTTGATACATACCTTGCCGTTGAAGTTCAGCCGGTGGATGACAGAAAGCGAAAGGGGGAATTATCAAAGGCCTTCACCAATAATAATAGGAAGATCACTTGTGATTCAGAATTGGAAAACCACATACTGAGGAACCTTATCAATGGCCATGCTACATATAGCGTAACCTTGTCTTTGAGATATCTTGGGATTGATAAATGGGAGCCAGCTACTTTGGCGATCAAGCGGGAAGGTTTTAGCATCAAGCGTACTTTACCTAGTGCTACTACAGTCACTGAGAAATTCTCGCCATCCACAATAGTTACAATTAGATGTGGAAATCCTAATGAATTCTCAATAAGT

Network for GWHGAAZE011888

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	9	202	8.50E-27

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.221
	SRR3591706	second leaf	0.336
	SRR3591707	mature leaf	0.230
	SRR3591708	Shoot apex	0.608
	SRR3591709	Stem	0.778
	SRR3591710	White floral bud	2.119
	SRR3591711	White flower	3.532
	SRR3591712	Green floral bud	1.129
	SRR3591713	Yellow flower	0.118
SRP173429	SRR8316895	Juvenile bud stage	0.634
	SRR8316896	Juvenile bud stage	0.332
	SRR8316897	Juvenile bud stage	0.087
	SRR8316894	Third green stage	0.202
	SRR8316900	Third green stage	0.223
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.064
	SRR8316899	Complete white stage	0.459
	SRR8316903	Complete white stage	0.111
	SRR8316902	Silver flowering stage	0.054
	SRR8316904	Silver flowering stage	0.025
	SRR8316905	Silver flowering stage	0.076
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.094
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.095
	SRR6706287	Light intensity 50%	0.149
	SRR6706288	Light intensity 20%	0.211
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.868
	CNS0095593	Slightly white alabastrum(diploid) 2	0.337
	CNS0095594	Slightly white alabastrum(diploid) 3	0.153
	CNS0095595	Whole white alabastrum(diploid) 2	0.579
	CNS0095596	Whole white alabastrum(diploid) 3	0.124
	CNS0095597	Whole white alabastrum(diploid) 4	0.412
	CNS0095598	Silvery flower (diploied) 1	1.172
	CNS0095599	Silvery flower (diploied) 2	1.021
	CNS0095600	Silvery flower (diploied) 3	0.799
	CNS0095601	Golden flower (diploid) 1	0.799
	CNS0095602	Golden flower (diploid) 2	1.295
	CNS0095603	Golden flower (diploid) 3	1.035
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.133
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.100
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.558
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.635
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.066
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.040
	CNS0095611	Silvery flower (diploied) 2	0.287
	CNS0095612	Silvery flower (diploied) 3	0.086
	CNS0095613	Golden flower (tetraploid) 1	0.078
	CNS0095614	Golden flower (tetraploid) 2	0.075
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.547
	CRR073298	Stem 2	0.151
	CRR073299	Stem 3	0.419
	CRR073300	Leaf 1	0.160
	CRR073301	Leaf 2	0.305
	CRR073302	Leaf 3	0.041
	CRR073303	Juvenile bud 1	0.170
	CRR073304	Juvenile bud 2	0.096
	CRR073305	Juvenile bud 3	0.228
	CRR073306	Third green 1	0.220
	CRR073307	Third green 2	0.126
	CRR073308	Third green 3	0.116
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.067
	CRR073311	Second white 3	0.079
	CRR073312	Silver flowering 1	0.261
	CRR073313	Silver flowering 2	0.276
	CRR073314	Silver flowering 3	0.075
	CRR073315	Gold flowering 1	0.506
	CRR073316	Gold flowering 2	0.840
	CRR073317	Gold flowering 3	0.189
	CRR073318	Tawny withering 1	0.534
	CRR073319	Tawny withering 2	1.974
	CRR073320	Tawny withering 3	0.558