Gene detail

Detail information of GWHGAAZE011895

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003633841.1	0	PREDICTED: probable receptor-like protein kinase At5g15080 [Vitis vinifera]
Swissprot	tr\|Q9LFP7\|Y5158_ARATH	0	Probable receptor-like protein kinase At5g15080
trEMBL	tr\|F6H5R1\|F6H5R1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47532.1}
TAIR10	AT5G15080.1	5E-157	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	74948480	74956030	-
GWHAAZE00000003	mRNA	74948480	74956030	-
GWHAAZE00000003	exon	74948480	74948811	-
GWHAAZE00000003	exon	74950231	74950354	-
GWHAAZE00000003	exon	74950428	74950564	-
GWHAAZE00000003	exon	74951810	74951945	-
GWHAAZE00000003	exon	74952055	74952395	-
GWHAAZE00000003	exon	74952814	74952978	-
GWHAAZE00000003	exon	74954941	74956030	-
GWHAAZE00000003	CDS	74954941	74956030	-
GWHAAZE00000003	CDS	74952814	74952978	-
GWHAAZE00000003	CDS	74952055	74952395	-
GWHAAZE00000003	CDS	74951810	74951945	-
GWHAAZE00000003	CDS	74950428	74950564	-
GWHAAZE00000003	CDS	74950231	74950354	-
GWHAAZE00000003	CDS	74948480	74948811	-

Transcript Sequence
>GWHTAAZE011907 ATGATGGCTGTACCGGTAACACCACTGCCGGAGCACTTCAACTCGCTGCCGTTGCCTTTGCCGGAGCAATTATGCCGTCCCTTCTCCTTAGCCGAGATCTTATCCGCAACTAACAACTTCGACGATTCATTGGTTATTGGGCAAGGCGGATTTGGTAAAGTATACAAAGGGGTCATCGACAACGGGGCAAGTATTGTTGCTATAAAACGGCTAAGCTCTGCATCTAAGCAAGGAGATTCCGAATTCAGAACCGAGATTGAGTTGCTCTCAAAATTTCGGCACTCTCATATTGTGTCTTTAATTGGTTACTGTTACAGTTCCACTGAAATGATCCTTGTCTATGAACATATGGCCAACGGGTCTCTAGCGGATCACTTGCACAAAATTGGCAAGTATGGTACTAGTTTTAATTTATCTTGGGTGCAGCGTCTCAAGATTTGTCTAGGAGCTGCTCGTGGCTTGGATTACCTCCATACAGGTACTGGTGTCATACATCGGGATATGAAGACTTCGAACATCCTCTTAGATAAGAATCGCGCAGCTAAAGTTTCAGACTTTGGTTTGTCTAGAATCAACCCAATTGATCAGTCTTGCACTCATATCACCACAAATGTAAAAGGGACAACGGGGTATATGGATCCAGAATATATGGTGACGTTCCGATTGACAATGAAATCCGATGTCTACTCTTTCGGGGTTGTACTATTTGAAGTGTTGTGTGGAAGGCGAGCGGTGGATTTTACACTTGATGAAGAGCAATGGAGTCTTGCTAGGTGGGCCCAATGCTGTATTGAAAAAGGAACGCTTCATCGTATTATCAATCCTAATTTGTGGTTGGAAATCTTGCCGGAATCTTTGAAAGAGTTTGTGCGAATTGCAAATCAATGCTTATGTTATCGGCCGAAAAAACGACCTACAATGACTCAGGTCGTGGGTTCACTCGAGTTGGCTTTGGCATTGCAGCTAGGACACAAAGATTCTTCTGCATTTGAAATGGAAATTATTTGTACAACTGAGGCAGATAAAATCATAGAAAATGTTGACTCGACAATGGTACAAGAAGAAAGGCAATCGTTTATGTTCTCGACAGAACTTGTAGACATTGCCACAACCAACAACAAGCAAAACGAGCCTAGGGTTCAAGGAATACCTTATATAAGGAGAAGACAGCAGCTATTGGACAGAGGAGAAGCAGCAACGACGGACAGCAGTGGAGAAAACGAGGAGAAAACGGTGACGGGAGGAGAGATGGCGGCGGAAAGTAAATCAACAAACGATATGAATAATAAAGACCAACCGGTTGCTCCCATTTTATCGTCCTCAAACTCTAGCAATGGTGAAAGTACTCCGTCCACTCCCAACGTAGGAGAGGAACTGAAAATTTCTTCTCAGCTTCGAAAATTCTCTTTCCGTGAGCTCAAGGCAGCAACAAGGAATTTTGGACCTGAGAGTTTCCTTGGTGAGGGTGGCTTCGGCTATGTCTACAAAGGCTGGATCAACGAAAATGGAATCACACCAGTAAAACCAGGCACGGGTCTTCCGGTTGCTGTTAAAATCCTCAATCATGATGGACTTCAGGGTCACAAAGAATGGCTTGCTGAAGTAAATTTTCTCGGCGACTTACTCCATCCTAACTTGGTTAAATTGATTGGGTGTTGCATTGAGGATGACCAAAGGCTGCTTGTGTATGAGTTCATGCCTCAGGGAAGCCTGGAGAATCACTTGTTTAGAAGGTCTCTTCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAAGGACTTGCTTTTCTTCATGAGGAAGCTGAAAGACCAGTTATATACAGAGATTTTAAGATGTCTAATATTCTGTTGGACGCAGACTACAATGCAAAGCTTTCTAATTTTGAACTTGCCAAAGACAGACCTGATGGAGATAAGACACATGTGTCTACTCAGGTAATTGGAACATACGGCTATGCAGCCCCCGAATATGTGATGACGGGACATCTAACGTCAAAGAGCAATGTCTACAGCTTTGGAGTTATTTTACTTGAATTGTTGACTGGGCGAAGATCAGTGGACAAAAACCGACCAAATGTGGAGCATAACTTTGTAGAATGGGCACGCCCACATCTAGAAGAGAGGCGGAAATTCTACCGTTTGATAGATCCACGCCTTGAGGGCCGATTCTCAAGTAAAGGTGCACAAAAGGCTGCTCAGTTGGTTGCCTGTTGCCTTGGCCGGGACCCGAAAGCCAGGCCGCTGATGATTGAAGTTGTTGAAGCCCTAATTCGTCTTCCTAACCTCGAAGGCATGGCTTGTTCTTCATCCTAG

Network for GWHGAAZE011895

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	45	311	1.20E-51
PF07714.18	PK_Tyr_Ser-Thr	485	760	2.80E-41

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.237
	SRR3591706	second leaf	0.939
	SRR3591707	mature leaf	1.272
	SRR3591708	Shoot apex	1.497
	SRR3591709	Stem	1.850
	SRR3591710	White floral bud	5.561
	SRR3591711	White flower	6.772
	SRR3591712	Green floral bud	7.401
	SRR3591713	Yellow flower	4.809
SRP173429	SRR8316895	Juvenile bud stage	1.413
	SRR8316896	Juvenile bud stage	1.543
	SRR8316897	Juvenile bud stage	2.670
	SRR8316894	Third green stage	0.845
	SRR8316900	Third green stage	1.549
	SRR8316901	Third green stage	1.567
	SRR8316898	Complete white stage	0.289
	SRR8316899	Complete white stage	2.993
	SRR8316903	Complete white stage	1.006
	SRR8316902	Silver flowering stage	0.605
	SRR8316904	Silver flowering stage	1.223
	SRR8316905	Silver flowering stage	0.514
	SRR8316906	Gold flowering stage	1.369
	SRR8316907	Gold flowering stage	1.509
	SRR8316908	Gold flowering stage	3.229
SRP132670	SRR6706286	Control	1.215
	SRR6706287	Light intensity 50%	1.353
	SRR6706288	Light intensity 20%	1.424
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.653
	CNS0095593	Slightly white alabastrum(diploid) 2	1.444
	CNS0095594	Slightly white alabastrum(diploid) 3	1.729
	CNS0095595	Whole white alabastrum(diploid) 2	1.718
	CNS0095596	Whole white alabastrum(diploid) 3	0.464
	CNS0095597	Whole white alabastrum(diploid) 4	1.570
	CNS0095598	Silvery flower (diploied) 1	2.611
	CNS0095599	Silvery flower (diploied) 2	1.243
	CNS0095600	Silvery flower (diploied) 3	2.583
	CNS0095601	Golden flower (diploid) 1	2.109
	CNS0095602	Golden flower (diploid) 2	3.542
	CNS0095603	Golden flower (diploid) 3	2.973
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.733
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.779
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.653
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.896
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.633
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.575
	CNS0095610	Silvery flower (diploied) 1	1.924
	CNS0095611	Silvery flower (diploied) 2	1.464
	CNS0095612	Silvery flower (diploied) 3	0.630
	CNS0095613	Golden flower (tetraploid) 1	0.796
	CNS0095614	Golden flower (tetraploid) 2	1.898
	CNS0095615	Golden flower (tetraploid) 3	0.724
CRA001975	CRR073297	Stem 1	1.972
	CRR073298	Stem 2	1.404
	CRR073299	Stem 3	0.509
	CRR073300	Leaf 1	1.631
	CRR073301	Leaf 2	1.374
	CRR073302	Leaf 3	1.552
	CRR073303	Juvenile bud 1	0.728
	CRR073304	Juvenile bud 2	0.331
	CRR073305	Juvenile bud 3	1.124
	CRR073306	Third green 1	0.147
	CRR073307	Third green 2	0.120
	CRR073308	Third green 3	0.081
	CRR073309	Second white 1	0.290
	CRR073310	Second white 2	0.096
	CRR073311	Second white 3	0.003
	CRR073312	Silver flowering 1	0.216
	CRR073313	Silver flowering 2	0.192
	CRR073314	Silver flowering 3	0.086
	CRR073315	Gold flowering 1	0.243
	CRR073316	Gold flowering 2	1.246
	CRR073317	Gold flowering 3	0.952
	CRR073318	Tawny withering 1	2.503
	CRR073319	Tawny withering 2	4.249
	CRR073320	Tawny withering 3	2.259