Gene detail

Detail information of GWHGAAZE011896

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP41243.1	hypothetical protein JCGZ_15650 [Jatropha curcas]
Swissprot	tr\|Q42510\|GNOM_ARATH	ARF guanine-nucleotide exchange factor GNOM
trEMBL	tr\|A0A067L230\|A0A067L230_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP41243.1}
TAIR10	AT1G13980.2	sec7 domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	74961094	74966158	-
GWHAAZE00000003	mRNA	74961094	74966158	-
GWHAAZE00000003	exon	74961094	74964714	-
GWHAAZE00000003	exon	74965601	74966158	-
GWHAAZE00000003	CDS	74965601	74966158	-
GWHAAZE00000003	CDS	74961094	74964714	-

Transcript Sequence
>GWHTAAZE011908 ATGAAAGCTATGGGGTACTTAAATCAGCACTCTGACATAAATACATTTGCTCCGGAACTCAAAAACTGTTCCAGTAGGCCTTCCGGAGGTGATTTAGCACTTGTGGTGAATTCAGAAATAGGTGCAGTTTTGGCTGTTATGAGGAGAAATGTAAGATGGGGGGTCCGCTATATGGCCGATGATGATCAACTCGAACACTCTTTGATCCAGTCCTTCAAAGAATTACGCAGGAAAATTTTCTCCTGGCAACATCAGTGGCATTTGATTAACCCAGTCATGTACCTCCAGCCATTTTTGGATGTGATTCAATCTGATGAAACCGGTGCACCAATCACCGGTGTTGCTTTATCATCTGTTTATAAATTCTTAACATTAGAGATATTTGATTTAGATACTGTGAATGTGGACTATGCTTTGCATTTGATAGTTGATGCCGTTACAAGTTGTCATTTTGAGGTCACCGATCCAGCTTCTGAAGAGGTGGTGCTGATGAAGATACTTCAGGTTCTTTTGGCCTGCATGAAGAATAAGGCATCACTTAAGTTGAGTAATCAGCATGTCAGTTTGCAAGATGTAGATCACACTTCCGGAAGTAAACAGCAAAACAATGGCCATGCCAGTTCAGAACGTGATGAAAAGACTTATTCTGTTGGAGTTTCTTCGAATGTTTCAACAGATACATTTGAAGGGGATGAAAATATAATGGAGGTTGGTCAAGGGAAAGAGGCTGCTCAGAGTGGAGACCATCTTATGAAGGAGCTGTATGGGGTCCCGTGCATGGTGGAAATATTTCACTTCTTATGTTCCCTTTTGAATATTATCGAGCAACACAGTGGAATTGGTCCGAGATCAAACCCTATAGCATATGATGAAGATGTCCCACTATTCGCATTAGGGTTAATCAATTCGGCTATTGAATTGGGCGGGGCCTCATTTGCCCATCACCCAAAACTACTGGCTTTGATACAAGATGAACTTTTCCGCCACTTGATGCAGTTCGGTTTGTCAATGAGTCCGCTAATCCTTTCCACAGTATGTAGCATTGTTCTTAATCTGTATCATCATTTGCGTTCCAAGCTTAAACTACAGCTCGAAGCTTTCTTCTCTTGTGTCCTTTTGAGAATCGCACAAAGCAAGCATGGAGCTTCGTATCAACAGCAGGAGGTTGCTATGGAGACACTTGTTGACCTTTGTAGACAACAGACATTTATGGCTGAGATGTATGTGAACTTCGATTGTGATATATCTTGCAATAATGTATTTGAAGAACTCGCCAATTTGTTATCGAAAAGTGCATTCCCGGTGAACAGCCCTTTATCTGCAATGCACATTCTTGCTCTCGATGGCCTAATCGCCATGATCCAGGGCATGGCCGAAAGAACATTCAGCGGGTTGCCAGCTTCGCTAAGTCTTGAAGATTACCAACCGTTTTGGATGGTGAAATGCAATAACTACGATGACCCTAGTCAGTGGGTCCCATTTGCTCATAAGATGAAATTCATCAAGAGGAAATTGATGATCGGAGCTGATCACTTCAATCGGGCCCCTATGAAAGGTCTTGAATTTCTCCAAGGAATGCATCTTCTGCCCGATAAACTCAACTCACGAAGTGTAGCTTGCTTTCTTCGGTACACAACCGGGTTAGATAAGAATCTTGTTGGCGATTTTCTTGGAAATCACGATGAATTTTGTATTGAAGTGCTTCATGAATTCGCTTGGACTTTTGATTTTTCCAACATGAATTTGGACACTGCATTGCGAGTTTTATTGGAGTCTTTTAAATTGCCTGGAGAGTCACAAAAGATACAAAGGGTTCTTGAGGCCTTTGCGGAAAGATATTATGAACAGTCACCACATATCTTGGCCAACAAAGATGCTGCTCTTTTACTGTCATATTCATTAATATTGCTTAACACAGATCAACACAATGCTCAGGTGAAGAAGAAGATGACAGAGGAAGATTTTATACGTAACAATCGGCACATAAATGGAGGGAACGATCTCCCTCGTGAGTACTTATGTGAGCTTTACCACTCAATCTGCATGAATGAGATCCGCATGACCCCCGAGACAGGTGCCGGCTTTCCAGTGATAACATCAAGCCATTGGATTGGTCTGAAGCACAAATCGAAACAATTGGCTCCGTTCATCGTCTGCGATTCAAGAGAGAATCTCGACTATGATATGTTTAAAATTCTGTCGAGTCCCACTATTGCCGCCCTCTCTGTGGTTTATGATCACGTGGAGCAGGAAGATGTTTTACAAACATGCATTGACGGGTTCTTAGCCGTTGCTAAAATTGCAGCTCGCTATAATCTTGATGATGTTTTGGATGATTTGGTCGTATCTCTTTGTAAATTTACGACCCTTTTGCTTCCGCTATCTGTTGAAGAATCTATCCTTGCATTTGGGGATGATACTAAAGGTAGAATGGCGACGGTGGCAGTTTTCACCATAGCAAATAAATACGGTGATTATATACGCGGTGGATGGAAAAACATTATTGATTGCATTTTGAGCTTGCACCGGCTAGGCCTTGTTCCTACCCATTTGGCCAGTGATGCAACCAATGAGTTGGACCCTGCGCCTGAACTTGAGCGAGGGCGAGCTGCTGCGGCTCCCCCACCGGTTTCCCATAAACCGTCTTTGATCACTTCTCAAAGGTCATCTAGTTTGATGGGTCGATTTAGCCAATTCTTGTATCTTGATGCAGACGAGCCAGCCCCACAACCTACCGGAGAACAACTTTTAGCTCATCAACGGTCTCTTCAGGCAGTTCAAAATTGCCACATTGATAACATTTTTACAGAAAGTAAGTTTTTGCAAGCCGAGTCCCTGTCGCAGCTAGCACGGGCCCTCATCTTAGCTGCGGGCCAGTCCTACAAGGGGAGTAATTCTTTTGAAAATGAAGACATTGCAGTTTTTTGCTTGGAGTTGCTCATTGCAGTGACGTTAAATAACCGGGATAGAATTATGCTTCTTTGGCGGGGCATTTATGAGCACATAGCCAACGTTGTACAATCAGCTGTAATGCCGTGTACCTTAGTTGAGAAGGCCGTGTTTGGCCTCCTTCGTATATGCCAACGATTACTCCCTTACAAGGAGAACTTGACCGACGAGCTACTCAAGTCTTTACAACTGGTTCTAAAACTCGACGCTCGCGTTGCTGATGCGTACTGTGAGCAAATCACAAATGAAGTTATGCGCCTTGTAAAAGCAAACGCAATGCAGATCCGATCCCATGTGGGGTGGCGCACCATAACCTCACTGCTCTCCATCACAGCCAGGCACCCAGAAGCATCTGAGGTTGGGTTTCAGACCCTCGAGTTCATCATGTCTGACGGGGCTCACCTCTTGCCGGCGAACTATGTGCTGTGTGTGAATGCGGCTCGGCAGTTTGCTGAGTCCCGGGTCGGGAATATTGAACAGTCAATTAAATCTTTGGATCTGATGGCGAATTCATTGGTCTGCCTCGTTCGATGGTCTGGCAAGACGAAAGAAGCCGTAGGGGAAGAGGCTTTGGCTCATGCGAAAATGTATCAAGATATCAGTGAAATGTGGTTGAGATTGTTACAAGGACTTAGAAAAGTTTGCATGGACCAACGAGAAGAGGTTCGTAACCACTCAATTTTGATGTTGCAAAGGTGCATAAACGGAATGGATGGTATCCATATCCCGAATGAGTTTTGGTTACAATGTTTCGATCAGGTGATCTTCACGTTGCTTGATGAAATTTTGCAAATAGCAGAGGATAATTCCCCAAAGGAGTATCAGAACATGGAAATGTCGCTATTTTTGTGCTTGAAACTTTTGTCGAAAGTCTTTTTACAGTCGATGGAGGATCTTTATCATTTGAGTTCCTTTTGTAGACTATGGGTTCCCATACTTGGTTGTATGGAGAGATATATGAAGGCTAAATTAAGAGGTAAAAGGAGCGAGAACGTACACGAATTAGTACCTGAGCTCCTCAGGAACACCTTACTTGTGATGAAGACTCGAGGAATTCTTGTGGAAAATGATTCCGTTGGTGGTGAAAGTTTCTGGCATTTAACGTGGTTACATGTGAAAAATATCTCCCCGTCTTTGCAGTTAGAAGTTTTCCCCGAGCACAATATAGCAGGGTGTAGTCCGCTCCCTGATGGGAATTTAGTGGTTCAGTCTAGCGAGACCACGACCTGA

Network for GWHGAAZE011896

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12783.8	Sec7_N	258	420	1.20E-34
PF01369.21	Sec7	502	685	1.60E-65

Protein Sequence

>GWHPAAZE011902
MKAMGYLNQHSDINTFAPELKNCSSRPSGGDLALVVNSEIGAVLAVMRRNVRWGVRYMADDDQLEHSLIQSFKELRRKIFSWQHQWHLINPVMYLQPFLDVIQSDETGAPITGVALSSVYKFLTLEIFDLDTVNVDYALHLIVDAVTSCHFEVTDPASEEVVLMKILQVLLACMKNKASLKLSNQHVSLQDVDHTSGSKQQNNGHASSERDEKTYSVGVSSNVSTDTFEGDENIMEVGQGKEAAQSGDHLMKELYGVPCMVEIFHFLCSLLNIIEQHSGIGPRSNPIAYDEDVPLFALGLINSAIELGGASFAHHPKLLALIQDELFRHLMQFGLSMSPLILSTVCSIVLNLYHHLRSKLKLQLEAFFSCVLLRIAQSKHGASYQQQEVAMETLVDLCRQQTFMAEMYVNFDCDISCNNVFEELANLLSKSAFPVNSPLSAMHILALDGLIAMIQGMAERTFSGLPASLSLEDYQPFWMVKCNNYDDPSQWVPFAHKMKFIKRKLMIGADHFNRAPMKGLEFLQGMHLLPDKLNSRSVACFLRYTTGLDKNLVGDFLGNHDEFCIEVLHEFAWTFDFSNMNLDTALRVLLESFKLPGESQKIQRVLEAFAERYYEQSPHILANKDAALLLSYSLILLNTDQHNAQVKKKMTEEDFIRNNRHINGGNDLPREYLCELYHSICMNEIRMTPETGAGFPVITSSHWIGLKHKSKQLAPFIVCDSRENLDYDMFKILSSPTIAALSVVYDHVEQEDVLQTCIDGFLAVAKIAARYNLDDVLDDLVVSLCKFTTLLLPLSVEESILAFGDDTKGRMATVAVFTIANKYGDYIRGGWKNIIDCILSLHRLGLVPTHLASDATNELDPAPELERGRAAAAPPPVSHKPSLITSQRSSSLMGRFSQFLYLDADEPAPQPTGEQLLAHQRSLQAVQNCHIDNIFTESKFLQAESLSQLARALILAAGQSYKGSNSFENEDIAVFCLELLIAVTLNNRDRIMLLWRGIYEHIANVVQSAVMPCTLVEKAVFGLLRICQRLLPYKENLTDELLKSLQLVLKLDARVADAYCEQITNEVMRLVKANAMQIRSHVGWRTITSLLSITARHPEASEVGFQTLEFIMSDGAHLLPANYVLCVNAARQFAESRVGNIEQSIKSLDLMANSLVCLVRWSGKTKEAVGEEALAHAKMYQDISEMWLRLLQGLRKVCMDQREEVRNHSILMLQRCINGMDGIHIPNEFWLQCFDQVIFTLLDEILQIAEDNSPKEYQNMEMSLFLCLKLLSKVFLQSMEDLYHLSSFCRLWVPILGCMERYMKAKLRGKRSENVHELVPELLRNTLLVMKTRGILVENDSVGGESFWHLTWLHVKNISPSLQLEVFPEHNIAGCSPLPDGNLVVQSSETTT

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18443	GBF1	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0032012	biological_process	regulation of ARF protein signal transduction
GO:0005086	molecular_function	ARF guanyl-nucleotide exchange factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.451
	SRR3591706	second leaf	0.750
	SRR3591707	mature leaf	1.695
	SRR3591708	Shoot apex	1.215
	SRR3591709	Stem	2.012
	SRR3591710	White floral bud	0.621
	SRR3591711	White flower	0.829
	SRR3591712	Green floral bud	0.797
	SRR3591713	Yellow flower	0.641
SRP173429	SRR8316895	Juvenile bud stage	1.132
	SRR8316896	Juvenile bud stage	1.268
	SRR8316897	Juvenile bud stage	1.072
	SRR8316894	Third green stage	0.813
	SRR8316900	Third green stage	1.792
	SRR8316901	Third green stage	1.786
	SRR8316898	Complete white stage	0.244
	SRR8316899	Complete white stage	1.775
	SRR8316903	Complete white stage	1.076
	SRR8316902	Silver flowering stage	0.546
	SRR8316904	Silver flowering stage	0.961
	SRR8316905	Silver flowering stage	0.460
	SRR8316906	Gold flowering stage	1.916
	SRR8316907	Gold flowering stage	1.309
	SRR8316908	Gold flowering stage	1.790
SRP132670	SRR6706286	Control	1.229
	SRR6706287	Light intensity 50%	1.432
	SRR6706288	Light intensity 20%	1.497
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.588
	CNS0095593	Slightly white alabastrum(diploid) 2	1.548
	CNS0095594	Slightly white alabastrum(diploid) 3	1.525
	CNS0095595	Whole white alabastrum(diploid) 2	0.811
	CNS0095596	Whole white alabastrum(diploid) 3	1.323
	CNS0095597	Whole white alabastrum(diploid) 4	1.384
	CNS0095598	Silvery flower (diploied) 1	1.050
	CNS0095599	Silvery flower (diploied) 2	0.967
	CNS0095600	Silvery flower (diploied) 3	2.411
	CNS0095601	Golden flower (diploid) 1	0.918
	CNS0095602	Golden flower (diploid) 2	1.996
	CNS0095603	Golden flower (diploid) 3	2.162
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.796
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.311
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.376
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.983
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.542
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.343
	CNS0095610	Silvery flower (diploied) 1	1.844
	CNS0095611	Silvery flower (diploied) 2	2.149
	CNS0095612	Silvery flower (diploied) 3	1.478
	CNS0095613	Golden flower (tetraploid) 1	0.783
	CNS0095614	Golden flower (tetraploid) 2	2.015
	CNS0095615	Golden flower (tetraploid) 3	2.038
CRA001975	CRR073297	Stem 1	1.662
	CRR073298	Stem 2	1.934
	CRR073299	Stem 3	1.331
	CRR073300	Leaf 1	2.946
	CRR073301	Leaf 2	2.543
	CRR073302	Leaf 3	1.664
	CRR073303	Juvenile bud 1	2.167
	CRR073304	Juvenile bud 2	1.330
	CRR073305	Juvenile bud 3	2.723
	CRR073306	Third green 1	0.562
	CRR073307	Third green 2	0.468
	CRR073308	Third green 3	0.564
	CRR073309	Second white 1	0.962
	CRR073310	Second white 2	1.017
	CRR073311	Second white 3	1.546
	CRR073312	Silver flowering 1	1.435
	CRR073313	Silver flowering 2	1.942
	CRR073314	Silver flowering 3	0.787
	CRR073315	Gold flowering 1	0.419
	CRR073316	Gold flowering 2	0.712
	CRR073317	Gold flowering 3	0.609
	CRR073318	Tawny withering 1	1.505
	CRR073319	Tawny withering 2	1.099
	CRR073320	Tawny withering 3	1.554