Gene detail

Detail information of GWHGAAZE012141

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002516843.1	1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
Swissprot	tr\|O78328\|DXS_CAPAN	Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic (Precursor)
trEMBL	tr\|B9RSX4\|B9RSX4_RICCO	1-deoxyxylulose-5-phosphate synthase, putative {ECO:0000313\|EMBL:EEF45457.1}
TAIR10	AT4G15560.1	Deoxyxylulose-5-phosphate synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	80809599	80815846	+
GWHAAZE00000003	mRNA	80809599	80815846	+
GWHAAZE00000003	exon	80809599	80810009	+
GWHAAZE00000003	exon	80810176	80810304	+
GWHAAZE00000003	exon	80810959	80811123	+
GWHAAZE00000003	exon	80811978	80812128	+
GWHAAZE00000003	exon	80812578	80812849	+
GWHAAZE00000003	exon	80813143	80813416	+
GWHAAZE00000003	exon	80813888	80814084	+
GWHAAZE00000003	exon	80814788	80815069	+
GWHAAZE00000003	exon	80815170	80815275	+
GWHAAZE00000003	exon	80815368	80815450	+
GWHAAZE00000003	exon	80815547	80815846	+
GWHAAZE00000003	five_prime_UTR	80809599	80809868	+
GWHAAZE00000003	CDS	80809869	80810009	+
GWHAAZE00000003	CDS	80810176	80810304	+
GWHAAZE00000003	CDS	80810959	80811123	+
GWHAAZE00000003	CDS	80811978	80812128	+
GWHAAZE00000003	CDS	80812578	80812849	+
GWHAAZE00000003	CDS	80813143	80813416	+
GWHAAZE00000003	CDS	80813888	80814084	+
GWHAAZE00000003	CDS	80814788	80815069	+
GWHAAZE00000003	CDS	80815170	80815275	+
GWHAAZE00000003	CDS	80815368	80815450	+
GWHAAZE00000003	CDS	80815547	80815846	+

Transcript Sequence
>GWHTAAZE012155 TTTCTCTACAAATACTCAGAATCCCTGCTTGTTCCTTTTTAGTCCTCTCACTCAAACCCATTGTCTCTCTCTCTCTCTAAATTCCACCACCAGCATTGCTGTCACTCCTCTCACTCTCAATATATACCTGTATATATATACATAGTTTGTATAGCTTGAAGTCTAAAGTCTGAACTTGGTTTCAGTTGCTGGGTTCTTGTAATTAGACACTGAGGTTTCTTGGTTTTTCTCAAATTCCTCTGTAAATTATTTTCTGGATATATTTGAGTAATGGCTCTCTGTACATTTCAGTTCCCTGGGCAATTGAGCAGGGCAGTGTCTAATTCAGATTCACTGAAACAGAATTCACAAGTTTCCTATTTGTTCTTGGGAACAGATCTGCTTTCCCATTCTCAGCATAAGCCCAATCAGGTTAAGAAAAGGGCAGGTGGGGTTTATGCATCACTATCGGAGACAGGGGAGTATCACTCACAAAGGCCACCCACTCCTCTTTTGGATACTGTCAATTATCCTATTCACATGAAAAATTTGTCTATTAAGGAATTGAAACAACTATCGGATGAGCTACGTTCCGACGTGATCTTTAATGTTTCCAAGACGGGAGGTCACCTTGGTTCCAGCCTTGGTGTCATTGAGCTCACAGTGGCTCTTCATTATGTGTTTAATGCTCCTCAAGACAAGATACTTTGGGATGTTGGTCATCAGTCTTACCCGCACAAAATCTTAACGGGTAGAAGAAACAAGATGCAGACAATGAGACAAACGAATGGGCTTGCGGGTTTCACTAAGCGCTCGGAGAGTGTATATGACTGTTTTGGAACTGGTCACAGTTCTACCACTATCTCAGCAGGCTTGGGAATGGCTGTGGGAAGAGATCTAAAGGGAGGAAAAAACAAGGTAGTTGCCATTATAGGTGATGGTGCAATGACAGCAGGCCAAGCTTACGAAGCTATGAACAATGCTGGTTACTTGGATTCTGACATGATTGTTATTCTTAATGACAATAAGCAAGTCTCTTTACCCACCGCAAGTCTAGACGGGCCCATACCACCTGTTGGAGCTTTGAGCAGTGCTCTTAGTAGGTTGCAATCAAACAGGCCTCTCCGCGAATTAAGAGAAGTTGCCAAGGGAGTTACCAAACAGATTGGTGGGCCCATGCATGAGCTAGCCTCAAAGGTTGACGAATATGCTCGTGGGCTGATTAGTGGTTCTGGATCAACACTTTTCGAAGAACTTGGATTATATTATATTGGTCCTGTTGATGGGCACAGCATAGATGATCTTGTTGCCATTTTGGAAGAAGTTAAGATTACTAAAACCACAGGTCCAGTCTTGATTCACGTGATCACCGAGAAAGGCCGAGGATACCCCTATGCTGAGAAAGCTGCTGACAAGTATCATGGAGTGACCAAGTTCGATCCAGCAACTGGAAAGCAATTCAAAGCCAGTGCCAAAACTCAGTCTTACACAACATACTTTGCTGAGGCTTTGATAGCTGAGGCAGAGGCAGATAAAGACGTGGTCGCTATCCATGCTGCAATGGGAGGTGGAACGGGATTAAACCTTTTCCTTCGCCGCTTCCCATCCCGTTGCTTTGATGTAGTGCATGATGTGGATTTGCAGAAGCTGCCCGTGAGATTTGCAATGGACAGAGCTGGGCTGGTTGGGGCAGATGGCCCCACACATTGTGGGGCCTTTGATGTCACTTTTATGGCGTGCTTACCAAACATGGTAGTAATGGCTCCTTCTGATGAGGCAGAGCTTTTTCACATGGTTGCAACTGCTGCAGCTATAGATGACCGGCCTAGTTGTTTTCGGTACCCGAGAGGGAACGGGGTTGGTGTTCAGCTGCCAGTAGGGAACAAAGGCATTCCCCTTGAGGTTGGAAAAGGAAGGATATTGATTGAAGGGGAGAGAGTTGCACTCTTGGGTTACGGTGCGGCGGTTCAGAGCTGTTTGGCTGCAGCCGCTTTAGTAGAAACCCACGTAGAAGAAGGGTCAATTGGGGGATTTGGTTCTCATGTTGCTCAGTTCATGGCCTTGGATGGGCTTCTTGATGGCAAGATTAAGTGGAGACCGTTGGTTCTTCCTGATAGGTACATCGACCATGGATCACCGTCCGATCAACTGATCGAAGCTGGACTCACTCCTTCTCATATAGCAGCGGCGGTATTCAATATACTCGGACAAGCGAGAGGCTTTGAAGATCATGACCTAAAGAGGCCCTCCAGTTTTCTATCGGTCAACACTGTACAAATCCAGGACCAGAACCAATGTAGGATAACTGTAAGAACTGATCTTTCATCCATTCTGAATCTGGTGAATCCAGTTTTCGGTCTTGCTTGGATGCATGCGTTTCTTTTGGATTGA

Network for GWHGAAZE012141

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13292.7	DXP_synthase_N	75	360	4.60E-108
PF02779.25	Transket_pyr	445	521	3.10E-16
PF02780.21	Transketolase_C	573	630	3.40E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01662	dxs	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Thiamine metabolism	map00730
		Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0016114	biological_process	terpenoid biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0008661	molecular_function	1-deoxy-D-xylulose-5-phosphate synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	74.284
	SRR3591706	second leaf	88.810
	SRR3591707	mature leaf	46.884
	SRR3591708	Shoot apex	64.954
	SRR3591709	Stem	36.102
	SRR3591710	White floral bud	29.164
	SRR3591711	White flower	96.659
	SRR3591712	Green floral bud	10.335
	SRR3591713	Yellow flower	107.715
SRP173429	SRR8316895	Juvenile bud stage	18.523
	SRR8316896	Juvenile bud stage	18.622
	SRR8316897	Juvenile bud stage	8.210
	SRR8316894	Third green stage	7.862
	SRR8316900	Third green stage	17.424
	SRR8316901	Third green stage	21.092
	SRR8316898	Complete white stage	35.370
	SRR8316899	Complete white stage	50.546
	SRR8316903	Complete white stage	66.642
	SRR8316902	Silver flowering stage	54.567
	SRR8316904	Silver flowering stage	86.184
	SRR8316905	Silver flowering stage	39.529
	SRR8316906	Gold flowering stage	145.690
	SRR8316907	Gold flowering stage	125.338
	SRR8316908	Gold flowering stage	113.689
SRP132670	SRR6706286	Control	27.441
	SRR6706287	Light intensity 50%	22.397
	SRR6706288	Light intensity 20%	16.534
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.686
	CNS0095593	Slightly white alabastrum(diploid) 2	9.320
	CNS0095594	Slightly white alabastrum(diploid) 3	9.231
	CNS0095595	Whole white alabastrum(diploid) 2	7.134
	CNS0095596	Whole white alabastrum(diploid) 3	4.688
	CNS0095597	Whole white alabastrum(diploid) 4	8.967
	CNS0095598	Silvery flower (diploied) 1	45.751
	CNS0095599	Silvery flower (diploied) 2	36.387
	CNS0095600	Silvery flower (diploied) 3	99.440
	CNS0095601	Golden flower (diploid) 1	28.689
	CNS0095602	Golden flower (diploid) 2	89.101
	CNS0095603	Golden flower (diploid) 3	89.130
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.651
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.772
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.634
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.504
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.979
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.627
	CNS0095610	Silvery flower (diploied) 1	101.990
	CNS0095611	Silvery flower (diploied) 2	63.984
	CNS0095612	Silvery flower (diploied) 3	51.229
	CNS0095613	Golden flower (tetraploid) 1	26.522
	CNS0095614	Golden flower (tetraploid) 2	70.038
	CNS0095615	Golden flower (tetraploid) 3	45.144
CRA001975	CRR073297	Stem 1	27.703
	CRR073298	Stem 2	25.381
	CRR073299	Stem 3	27.142
	CRR073300	Leaf 1	15.990
	CRR073301	Leaf 2	23.039
	CRR073302	Leaf 3	14.247
	CRR073303	Juvenile bud 1	15.886
	CRR073304	Juvenile bud 2	20.320
	CRR073305	Juvenile bud 3	28.359
	CRR073306	Third green 1	56.612
	CRR073307	Third green 2	52.312
	CRR073308	Third green 3	68.397
	CRR073309	Second white 1	72.370
	CRR073310	Second white 2	53.654
	CRR073311	Second white 3	58.295
	CRR073312	Silver flowering 1	107.641
	CRR073313	Silver flowering 2	133.467
	CRR073314	Silver flowering 3	117.648
	CRR073315	Gold flowering 1	14.973
	CRR073316	Gold flowering 2	15.659
	CRR073317	Gold flowering 3	16.565
	CRR073318	Tawny withering 1	10.245
	CRR073319	Tawny withering 2	10.392
	CRR073320	Tawny withering 3	8.569