Gene detail

Detail information of GWHGAAZE012206

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010649716.1	0	PREDICTED: ubiquitin-like-specific protease ESD4 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q94F30\|ESD4_ARATH	5E-127	Ubiquitin-like-specific protease ESD4
trEMBL	tr\|F6HE59\|F6HE59_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50311.1}
TAIR10	AT4G15880.1	4E-88	Cysteine proteinases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	81725105	81728798	+
GWHAAZE00000003	mRNA	81725105	81728798	+
GWHAAZE00000003	exon	81725105	81725920	+
GWHAAZE00000003	exon	81726014	81726093	+
GWHAAZE00000003	exon	81726181	81726274	+
GWHAAZE00000003	exon	81726380	81726478	+
GWHAAZE00000003	exon	81727316	81727408	+
GWHAAZE00000003	exon	81727507	81727626	+
GWHAAZE00000003	exon	81728221	81728348	+
GWHAAZE00000003	exon	81728696	81728798	+
GWHAAZE00000003	CDS	81725105	81725920	+
GWHAAZE00000003	CDS	81726014	81726093	+
GWHAAZE00000003	CDS	81726181	81726274	+
GWHAAZE00000003	CDS	81726380	81726478	+
GWHAAZE00000003	CDS	81727316	81727408	+
GWHAAZE00000003	CDS	81727507	81727626	+
GWHAAZE00000003	CDS	81728221	81728348	+
GWHAAZE00000003	CDS	81728696	81728798	+

Transcript Sequence
>GWHTAAZE012220 ATGGGTGCCATAACGAATGATTGTAAACATGGGCACAACTACTACGCCATGAATTACAGATCTCCATCTTCATCCTCACCAGATTCAGACTCTCACAATGATTCTCACATTTCGAAAAAAGCCAAATATTCGCCGTCTTTACGCCCTGAATGTTCGTCTTCATCAAAAAGTGCAGCTTCAAAAGTTTCTCGGTACCCTACACCGGTACAGCAGATTCGCAGGGAGGTTCATGCCCCTTGTAGAGCACCCAAGTTTGGGTCTTTTAGGTCAAATTCCGGTGGAGTAATTAGATATGGGGGGAATTCAGCTGAGATTGAATCAAAGGGAAAGTTTTTGTTTCAACATTATAAGAGGGCAATGAAAAGTGCATTGAGTATGTTCCGATATTATGAAATTGATAAGGCGATTGGTGTTGAACAAGAGACTGTTAAGGATGATGTTTCCGAGGATTCAAGTGTTGAAGAGGTGGTTGAGCTTGTGGAGGAGAGGAGTGAAGGGCTGCCTAGGGTTTTGGAGCAGAGGTCAAAAGAAACGGATGAGATTTTGGCAAATTTTAAGAAATTAGATGAAAAAGATATGGAGCGTAAATTTCTGCCATCATCTTCCTCAGGGGTTTCGGAATTTTCAAATCTGAAGACAGGCTCAGTGTCGTTTAATGAGGAGTTGGATGTTGTGAGGAGGGTGCCTTTATATATAAAATTGCTTGATTCTGCAAAGAAGTCGGATGAAAAACTGAGCAATTTGAGTCTTCAGATCAAATATCAAGAGAGCATCCGAAGTACTCATCTAATCACTCCGGCAAAGAAAAGGGAGGAGTATTCAGTTAGTGAGCCTTTTGTGCCACTTAGTGATGACGAAGAGGCTGAGGTTGCGCGTGCGTTTTCTAGTCCCAATCGGAGGATGATTCTGGTCACTCATGAAAACTCTAATATTGAGATAACTGTAGAAAAGTTGAGGTGCTTGAGACCTCGTGCATGGTTGAATGATGAGGTTATTAATGTGTACTTGGAGTTGCTGAAAGAGAGGGAAAAGAGGGAGCCCCTGAAATATTTGAAATGTCATTTCTTCAGCACATTCTTTTACAAGAAGTTATTTAGTGGGAGGAACAGCTATGATTTCAAGTCAGTTAAAAGATGGACTACGCAGAGGAAGTTGGGGTACTGCCTTCTTGACTGTGACAAAATATTTGTTCCTATCCACAAAGAAGTACATTGGTGCTTAGCAATTATCAATAATAAGGATAAGAAGTTCCAGTATCTTGATTCACTAAAAGGAGTTGATAGGCAAGTAATGAAAGTACTGGCTAGATACTTTGTGGATGAGGTGAAGGACAAGAGTGGGAAGGACATTGATGTGAATTCTTGGAAGCAAGAATATGTTCAGGACCTTCCCGATCAGGAGAATGGGTGTGTACCATTTTCAGTTGTATTGTACGACTGTGGTATGTTCATGATCAAATATGCCGACTTCTATAGCAGGGACATAGGACTCTGTTTTAAGCAGGTAAGCCACGTGCCGGTGACTTTATGTTGA

Network for GWHGAAZE012206

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02902.20	Peptidase_C48	326	494	2.40E-36

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	ULP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008234	molecular_function	cysteine-type peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.714
	SRR3591706	second leaf	4.262
	SRR3591707	mature leaf	4.810
	SRR3591708	Shoot apex	5.804
	SRR3591709	Stem	5.347
	SRR3591710	White floral bud	5.478
	SRR3591711	White flower	6.909
	SRR3591712	Green floral bud	5.035
	SRR3591713	Yellow flower	5.444
SRP173429	SRR8316895	Juvenile bud stage	5.366
	SRR8316896	Juvenile bud stage	5.495
	SRR8316897	Juvenile bud stage	2.960
	SRR8316894	Third green stage	3.028
	SRR8316900	Third green stage	7.160
	SRR8316901	Third green stage	5.623
	SRR8316898	Complete white stage	1.954
	SRR8316899	Complete white stage	8.970
	SRR8316903	Complete white stage	4.314
	SRR8316902	Silver flowering stage	2.693
	SRR8316904	Silver flowering stage	3.943
	SRR8316905	Silver flowering stage	2.098
	SRR8316906	Gold flowering stage	4.813
	SRR8316907	Gold flowering stage	4.259
	SRR8316908	Gold flowering stage	6.083
SRP132670	SRR6706286	Control	5.792
	SRR6706287	Light intensity 50%	5.482
	SRR6706288	Light intensity 20%	4.659
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.704
	CNS0095593	Slightly white alabastrum(diploid) 2	4.091
	CNS0095594	Slightly white alabastrum(diploid) 3	1.594
	CNS0095595	Whole white alabastrum(diploid) 2	3.291
	CNS0095596	Whole white alabastrum(diploid) 3	3.243
	CNS0095597	Whole white alabastrum(diploid) 4	3.417
	CNS0095598	Silvery flower (diploied) 1	7.109
	CNS0095599	Silvery flower (diploied) 2	4.117
	CNS0095600	Silvery flower (diploied) 3	4.424
	CNS0095601	Golden flower (diploid) 1	6.557
	CNS0095602	Golden flower (diploid) 2	6.377
	CNS0095603	Golden flower (diploid) 3	6.166
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.616
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.749
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.329
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.013
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.161
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.743
	CNS0095610	Silvery flower (diploied) 1	5.663
	CNS0095611	Silvery flower (diploied) 2	6.727
	CNS0095612	Silvery flower (diploied) 3	4.369
	CNS0095613	Golden flower (tetraploid) 1	3.641
	CNS0095614	Golden flower (tetraploid) 2	4.565
	CNS0095615	Golden flower (tetraploid) 3	4.562
CRA001975	CRR073297	Stem 1	4.395
	CRR073298	Stem 2	4.848
	CRR073299	Stem 3	2.740
	CRR073300	Leaf 1	5.026
	CRR073301	Leaf 2	4.201
	CRR073302	Leaf 3	2.033
	CRR073303	Juvenile bud 1	2.660
	CRR073304	Juvenile bud 2	1.726
	CRR073305	Juvenile bud 3	2.791
	CRR073306	Third green 1	0.294
	CRR073307	Third green 2	1.138
	CRR073308	Third green 3	1.129
	CRR073309	Second white 1	1.216
	CRR073310	Second white 2	1.537
	CRR073311	Second white 3	1.618
	CRR073312	Silver flowering 1	0.757
	CRR073313	Silver flowering 2	1.793
	CRR073314	Silver flowering 3	1.120
	CRR073315	Gold flowering 1	2.941
	CRR073316	Gold flowering 2	2.319
	CRR073317	Gold flowering 3	0.746
	CRR073318	Tawny withering 1	3.196
	CRR073319	Tawny withering 2	2.564
	CRR073320	Tawny withering 3	3.145