Gene detail

Detail information of GWHGAAZE012289

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002272537.1	4.7438E-144	PREDICTED: probable N-acetyltransferase HLS1-like [Vitis vinifera]
Swissprot	tr\|O64815\|HLS1L_ARATH	2E-69	Probable N-acetyltransferase HLS1-like
trEMBL	tr\|F6H724\|F6H724_VITVI	2E-144	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47971.1}
TAIR10	AT2G23060.1	5E-58	Acyl-CoA N-acyltransferases (NAT) superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	83092623	83095334	+
GWHAAZE00000003	mRNA	83092623	83095334	+
GWHAAZE00000003	exon	83092623	83092811	+
GWHAAZE00000003	exon	83093434	83093564	+
GWHAAZE00000003	exon	83094467	83095334	+
GWHAAZE00000003	CDS	83092623	83092811	+
GWHAAZE00000003	CDS	83093434	83093564	+
GWHAAZE00000003	CDS	83094467	83095334	+

Transcript Sequence
>GWHTAAZE012303 ATGTGTGACAACATGAAAATAGGGAAAAGGGTTGTAATAAGGGAGTTCTATGAAGAGAGAGACAGAGAAGTAGTGATGAAGCTAGAGAAGAGTTGCAACATAGGGTCTAAGAAAGGGATATTCACATTCACTGGCATCATGGATGACCCTTTTTGTAGGGTTAGGCTCTACCCTATTCATGTTATGTTGGTAGCTGAGTTGGAGGGGGACGTTGTCGGAATGGTTCAAGGGTGTATTAAGTGTGTAGGGACTGGTTTTGGGCGAAGACGAGTCCTCAATTTGGGCTGCATACTTGGCCTTCGAGTCTCTCCTGCCCATAGGCGAATGGGAATCGGATTAAAGCTAGTTCAATCAGTGGAAGAATGGCTGATTCAAAATGGAGCAAACTACACTTTCCTAGCCACAGAGGAGAAAAACACTGCCTCCACAAATCTCTTCACTCTCAAATCCAACTACCTCAAATTCACCTCACTACTCATATGTGTTCAACCACTTCCGAATTCCCCTGCTCTTAAAACCCCCTCAGATCAACACATAGAAATAGAGAAATTACCCATTGAAGAGGCCATGTCTCTCTACAATACCCACCTCAAATCCAAGGACTTGTACCCCACAGACATTGAATCCATCCTAAAAGAAAAACTCAGCATAGGCACTTGGCTCTGTTACTTCAAAGAACAGAGGGACCAAGATTGGGCTCTTTTTAGTATATGGAACACATGTGAGGCTTATAAACTTCAAGCCACAAAATACTACTCATCGTCATCTCTATCGAGGGTTTTTTATGAAACTATAAATAGTGCAAGGGACAATTTTTTTCAATGTTTTAAGGACCTGAAGTGGCCAATGTGGGACCCAATTGAGAAACCCTTTGGATTCTTGTTTTTATATGGGGTTTGTGGGGAAGGGGAGAGGAGAGGGGAGCTTATGGAGGCTGTATGGGGGTTTGGGTTGAAAATGGGTGAAAGCGTGAGGGGGTGTAGGGCTTTGATAACAGAGATGGGGGCTTTTGATCCAATGGGAGAACATGTTCCTAAGGGGTCAAAGTCAATGACTTGTATTGAAGATTTGTGGTGCTTGAAGAGAGTCAATGCGAATTTAAGTGGTGGTGGTGGTGGTGAGGAGGAGGAGGAGCTGAATGTGAAGACAAATGTGAGGAATGTGTTTGTTGATCCTAGGGACTTTTGA

Network for GWHGAAZE012289

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00583.26	Acetyltransf_1	62	147	4.80E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GNAT

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008080	molecular_function	N-acetyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.173
	SRR3591708	Shoot apex	4.626
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.753
	SRR3591711	White flower	0.439
	SRR3591712	Green floral bud	0.172
	SRR3591713	Yellow flower	0.724
SRP173429	SRR8316895	Juvenile bud stage	0.052
	SRR8316896	Juvenile bud stage	0.007
	SRR8316897	Juvenile bud stage	0.166
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.011
	SRR8316901	Third green stage	0.075
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.386
	SRR8316903	Complete white stage	0.136
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.056
	SRR8316906	Gold flowering stage	0.180
	SRR8316907	Gold flowering stage	0.142
	SRR8316908	Gold flowering stage	0.103
SRP132670	SRR6706286	Control	0.104
	SRR6706287	Light intensity 50%	0.192
	SRR6706288	Light intensity 20%	0.100
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.373
	CNS0095593	Slightly white alabastrum(diploid) 2	0.255
	CNS0095594	Slightly white alabastrum(diploid) 3	0.075
	CNS0095595	Whole white alabastrum(diploid) 2	0.153
	CNS0095596	Whole white alabastrum(diploid) 3	0.040
	CNS0095597	Whole white alabastrum(diploid) 4	0.145
	CNS0095598	Silvery flower (diploied) 1	0.933
	CNS0095599	Silvery flower (diploied) 2	1.028
	CNS0095600	Silvery flower (diploied) 3	0.389
	CNS0095601	Golden flower (diploid) 1	0.670
	CNS0095602	Golden flower (diploid) 2	0.435
	CNS0095603	Golden flower (diploid) 3	0.664
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.115
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.127
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.180
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.131
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.155
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.201
	CNS0095610	Silvery flower (diploied) 1	0.258
	CNS0095611	Silvery flower (diploied) 2	0.303
	CNS0095612	Silvery flower (diploied) 3	0.110
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.178
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.119
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.113
	CRR073300	Leaf 1	0.053
	CRR073301	Leaf 2	0.039
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.073
	CRR073304	Juvenile bud 2	0.032
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.082
	CRR073312	Silver flowering 1	0.004
	CRR073313	Silver flowering 2	0.001
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.081
	CRR073316	Gold flowering 2	0.163
	CRR073317	Gold flowering 3	0.184
	CRR073318	Tawny withering 1	0.085
	CRR073319	Tawny withering 2	0.092
	CRR073320	Tawny withering 3	0.129