Gene detail

Detail information of GWHGAAZE012299

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006419372.1	4.8379E-166	hypothetical protein CICLE_v10005645mg [Citrus clementina]
Swissprot	tr\|Q8GYN9\|MENB_ARATH	2E-27	1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal
trEMBL	tr\|V4RXX7\|V4RXX7_9ROSI	2E-166	Uncharacterized protein {ECO:0000313\|EMBL:ESR32612.1}
TAIR10	AT4G16210.1	3E-117	enoyl-CoA hydratase/isomerase A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	83209955	83212800	+
GWHAAZE00000003	mRNA	83209955	83212800	+
GWHAAZE00000003	exon	83209955	83210457	+
GWHAAZE00000003	exon	83211663	83211945	+
GWHAAZE00000003	exon	83212696	83212800	+
GWHAAZE00000003	CDS	83209955	83210457	+
GWHAAZE00000003	CDS	83211663	83211945	+
GWHAAZE00000003	CDS	83212696	83212800	+

Transcript Sequence
>GWHTAAZE012313 ATAAACTGCGCACACTTCAAGACAATCTCCCGATCAAGCCAAATCCAAACCTACCTATATTTCACAGCCTCGCTCACAGTTCCAGTCCCAAAAATGGAGTCCTCTTCGCCAGACAAATTAATCCAGGTCCGCCGGGACCCGGACGGAATAGCCTACGTCACAATCAATCGCCCTAAGTTACTCAACTCCCTCACCCGACCAATGATGGTCGATCTCGCTAGGGCCTTTAAGAGCCTCGACGCCGATGATTCGGTCCGGGCGGTTATACTGTCCGGGTCGGGTCGGGCGTTCTGCTCCGGCGTGGACCTGACGTCAGCGGAGGACGTTTTCAAGGGGGACGTGAAGGACGTCGAGACGGATCCGGTGGCGCAGATGGAGCGTTGCCGGAAACCTATAATCGGAGCTATCGGTGGTTTTGCTGTGACAGCCGGGTTCGAAATCGCACTTGCGTGTGATGTTTTGATTGCTTCGAAAGGTGCCAAATTCATGGATACTCATGCTAGGTTTGGAATATTTCCTTCGTGGGGTCTATCTCAAAAGCTTTCACGCATTATAGGACCCAATAGAGCTCGTGAAGTGTCTTTAACAGCCACGCCCATAACTGCAGAACAAGGCGAGAGGTGGGGCCTGGTGAATCACATTGTTGAAGCAACTGAATTATTGAAGAAAGCCCGGGAAATTGCGGAGGCCATGATCAAGAATAATCATGACTTGGTGTTGAGGTACAAGTCTGTTGTAAATGATGGCCTCAAGCTGGACCTTCAACATGCTCTTTTGCTGGAGAAGGAGAGGGCTCATGATTATTACAATGGAATGACTAAGGAGCAGTTCAAGAAAATGCAGGAGTTCATATCAAGTCGGAGTTCGAAAAAACCTGTTTCCAAGTTGTAG

Network for GWHGAAZE012299

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00378.21	ECH_1	48	284	5.60E-52

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01692	paaF, echA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Fatty acid metabolism	map01212
		Propanoate metabolism	map00640
		Butanoate metabolism	map00650
		Fatty acid degradation	map00071
		Valine, leucine and isoleucine degradation	map00280
		Lysine degradation	map00310
		Phenylalanine metabolism	map00360
		Tryptophan metabolism	map00380
		beta-Alanine metabolism	map00410
		Limonene and pinene degradation	map00903
		Geraniol degradation	map00281
		Benzoate degradation	map00362
		Aminobenzoate degradation	map00627
		Caprolactam degradation	map00930

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.824
	SRR3591706	second leaf	19.738
	SRR3591707	mature leaf	16.368
	SRR3591708	Shoot apex	42.153
	SRR3591709	Stem	45.391
	SRR3591710	White floral bud	34.549
	SRR3591711	White flower	33.842
	SRR3591712	Green floral bud	31.833
	SRR3591713	Yellow flower	39.865
SRP173429	SRR8316895	Juvenile bud stage	42.746
	SRR8316896	Juvenile bud stage	54.340
	SRR8316897	Juvenile bud stage	26.755
	SRR8316894	Third green stage	21.921
	SRR8316900	Third green stage	77.018
	SRR8316901	Third green stage	70.688
	SRR8316898	Complete white stage	44.654
	SRR8316899	Complete white stage	78.547
	SRR8316903	Complete white stage	54.452
	SRR8316902	Silver flowering stage	27.196
	SRR8316904	Silver flowering stage	34.095
	SRR8316905	Silver flowering stage	20.519
	SRR8316906	Gold flowering stage	67.622
	SRR8316907	Gold flowering stage	77.442
	SRR8316908	Gold flowering stage	78.455
SRP132670	SRR6706286	Control	89.592
	SRR6706287	Light intensity 50%	80.690
	SRR6706288	Light intensity 20%	89.823
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	71.817
	CNS0095593	Slightly white alabastrum(diploid) 2	65.686
	CNS0095594	Slightly white alabastrum(diploid) 3	72.773
	CNS0095595	Whole white alabastrum(diploid) 2	77.348
	CNS0095596	Whole white alabastrum(diploid) 3	88.585
	CNS0095597	Whole white alabastrum(diploid) 4	72.476
	CNS0095598	Silvery flower (diploied) 1	80.967
	CNS0095599	Silvery flower (diploied) 2	84.082
	CNS0095600	Silvery flower (diploied) 3	80.396
	CNS0095601	Golden flower (diploid) 1	94.904
	CNS0095602	Golden flower (diploid) 2	88.253
	CNS0095603	Golden flower (diploid) 3	84.626
	CNS0095604	Slightly white alabastrum(tetraploid) 1	66.340
	CNS0095605	Slightly white alabastrum(tetraploid) 2	57.179
	CNS0095606	Slightly white alabastrum(tetraploid) 3	50.374
	CNS0095607	Whole white alabastrum(tetraploid) 1	62.439
	CNS0095608	Whole white alabastrum(tetraploid) 2	61.564
	CNS0095609	Whole white alabastrum(tetraploid) 3	62.141
	CNS0095610	Silvery flower (diploied) 1	69.259
	CNS0095611	Silvery flower (diploied) 2	91.289
	CNS0095612	Silvery flower (diploied) 3	75.184
	CNS0095613	Golden flower (tetraploid) 1	66.284
	CNS0095614	Golden flower (tetraploid) 2	84.278
	CNS0095615	Golden flower (tetraploid) 3	84.418
CRA001975	CRR073297	Stem 1	50.797
	CRR073298	Stem 2	45.812
	CRR073299	Stem 3	71.044
	CRR073300	Leaf 1	46.125
	CRR073301	Leaf 2	44.197
	CRR073302	Leaf 3	63.432
	CRR073303	Juvenile bud 1	51.974
	CRR073304	Juvenile bud 2	54.674
	CRR073305	Juvenile bud 3	47.052
	CRR073306	Third green 1	37.887
	CRR073307	Third green 2	39.584
	CRR073308	Third green 3	32.048
	CRR073309	Second white 1	38.510
	CRR073310	Second white 2	29.092
	CRR073311	Second white 3	22.368
	CRR073312	Silver flowering 1	24.633
	CRR073313	Silver flowering 2	28.869
	CRR073314	Silver flowering 3	19.313
	CRR073315	Gold flowering 1	35.146
	CRR073316	Gold flowering 2	31.119
	CRR073317	Gold flowering 3	29.845
	CRR073318	Tawny withering 1	40.351
	CRR073319	Tawny withering 2	31.429
	CRR073320	Tawny withering 3	35.120