Gene detail

Detail information of GWHGAAZE012318

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007035887.1	1.9881E-164	Gibberellin 2-oxidase [Theobroma cacao]
Swissprot	tr\|Q9XHM5\|G2OX2_PEA	6E-137	Gibberellin 2-beta-dioxygenase 2
trEMBL	tr\|A0A061EQ73\|A0A061EQ73_THECC	7E-165	Gibberellin 2-oxidase {ECO:0000313\|EMBL:EOY06813.1}
TAIR10	AT1G02400.1	1E-94	gibberellin 2-oxidase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	83548676	83552335	+
GWHAAZE00000003	mRNA	83548676	83552335	+
GWHAAZE00000003	exon	83548676	83549058	+
GWHAAZE00000003	exon	83551288	83551723	+
GWHAAZE00000003	exon	83552096	83552335	+
GWHAAZE00000003	CDS	83548676	83549058	+
GWHAAZE00000003	CDS	83551288	83551723	+
GWHAAZE00000003	CDS	83552096	83552335	+

Transcript Sequence
>GWHTAAZE012332 ATGGTGGTGGTAACTCCAACTACAAATATTCGAACTGAAAAAATCAGAGATTTGGATCTTCCGATCATTGACCTTTCGGCTGATAGATCAGAGGTCTCAAAGCTCATTGTCAAATCTTGTGAAGACTTTGGTTTCTTTAAGGTCATCAACCATGGAGTCCCTCTTGATATTATCAATAAAATGGAAGATGAAAGCTTCGGGTTTTTTGCCAAGCCCGGGCCAGATAAACAGCGGGCCGGTCCGGCTAACCCGTTCGGGTATGGGAGCAAGAACATAGGCTTTAATGGAGATATTGGAGAGGTTGAATATCTTCTTCTTAATACCAATCCTCTCACTATTTCTCACTTGTCCAAATCCATCTCCACCGACCCCTCAAAATTCAGCCGTGCAGTGAGTGGTTATGTAGAATCAGTTAGGGGACTGGCATGTGAGATATTGGAATTGATGGCAGAAGGGCTGTGGGTCCCGGACACCTCTGTGTTCAGTAGGCTGATCAGGGCCGTTGATAGTGACTCGCTCCTCAGGTTCAATCACTATCCACCACTGGATAGGGACACTCAACCTTCCTCATTTCATCATCATCATCATCATCAAAGCAGTAACAACAACAGGATTGGGTTCGGAGAGCATTCTGACCCTCAGATGTTGACCATCTTGAGATCCAACGATGTGGGTGGACTACAGATCTCTCTTGAGGATGGGGTGTGGGTCCCAGTCACCCCTGACCCCACTGCCTTCTGTGTCAATGTGGGTGACGTGTTGCAGGTGGTTCCCTCCTTCCTTCTCCTCCCCTTCGTGAATCATCATAATCCTAAAAAGGCTATGACAAATGGAAGGTTTGTGAGTGTGAGGCACAGAGCAATGGCAAACTCATATAAACCCAGAATGTCAATGGCCTATTTTGGCGCTCCACCACTCCATGCATTAATCGCTTGTACCCCAGAATTGGTTTCCCCACAGAAGCCTTACCCCTACAGACCATTCACTTGGGGTGAATACAAAAAGGCTACGTATTCCCTACGACTTGGAGATAGTCGGCTTAATCTTTTCAGAGTTTAA

Network for GWHGAAZE012318

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	20	84	9.30E-14
PF03171.21	2OG-FeII_Oxy	172	302	2.80E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04125	E1.14.11.13	Biosynthesis of secondary metabolites	map01110
K04125	E1.14.11.13	Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.497
	SRR3591706	second leaf	0.274
	SRR3591707	mature leaf	0.106
	SRR3591708	Shoot apex	1.543
	SRR3591709	Stem	0.211
	SRR3591710	White floral bud	0.265
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.203
	SRR3591713	Yellow flower	0.321
SRP173429	SRR8316895	Juvenile bud stage	0.161
	SRR8316896	Juvenile bud stage	0.312
	SRR8316897	Juvenile bud stage	0.201
	SRR8316894	Third green stage	0.252
	SRR8316900	Third green stage	1.101
	SRR8316901	Third green stage	1.203
	SRR8316898	Complete white stage	0.086
	SRR8316899	Complete white stage	2.958
	SRR8316903	Complete white stage	0.257
	SRR8316902	Silver flowering stage	0.068
	SRR8316904	Silver flowering stage	0.146
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.059
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.352
	SRR6706287	Light intensity 50%	0.724
	SRR6706288	Light intensity 20%	0.771
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.566
	CNS0095593	Slightly white alabastrum(diploid) 2	1.018
	CNS0095594	Slightly white alabastrum(diploid) 3	0.237
	CNS0095595	Whole white alabastrum(diploid) 2	0.454
	CNS0095596	Whole white alabastrum(diploid) 3	0.210
	CNS0095597	Whole white alabastrum(diploid) 4	0.844
	CNS0095598	Silvery flower (diploied) 1	0.464
	CNS0095599	Silvery flower (diploied) 2	0.291
	CNS0095600	Silvery flower (diploied) 3	0.096
	CNS0095601	Golden flower (diploid) 1	0.224
	CNS0095602	Golden flower (diploid) 2	0.165
	CNS0095603	Golden flower (diploid) 3	0.238
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.059
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.271
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.794
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.407
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.051
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.234
	CNS0095610	Silvery flower (diploied) 1	0.269
	CNS0095611	Silvery flower (diploied) 2	0.015
	CNS0095612	Silvery flower (diploied) 3	0.194
	CNS0095613	Golden flower (tetraploid) 1	0.093
	CNS0095614	Golden flower (tetraploid) 2	0.076
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.311
	CRR073298	Stem 2	0.334
	CRR073299	Stem 3	0.052
	CRR073300	Leaf 1	0.454
	CRR073301	Leaf 2	0.999
	CRR073302	Leaf 3	0.744
	CRR073303	Juvenile bud 1	1.464
	CRR073304	Juvenile bud 2	0.465
	CRR073305	Juvenile bud 3	1.811
	CRR073306	Third green 1	0.842
	CRR073307	Third green 2	1.417
	CRR073308	Third green 3	1.316
	CRR073309	Second white 1	0.096
	CRR073310	Second white 2	0.133
	CRR073311	Second white 3	0.125
	CRR073312	Silver flowering 1	0.221
	CRR073313	Silver flowering 2	0.272
	CRR073314	Silver flowering 3	0.120
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.083
	CRR073320	Tawny withering 3	0.216