Gene detail

Detail information of GWHGAAZE012322

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009779070.1	0	PREDICTED: E3 ubiquitin-protein ligase UPL6 [Nicotiana sylvestris]
Swissprot	tr\|Q8RWB8\|UPL6_ARATH	0	E3 ubiquitin-protein ligase UPL6
trEMBL	tr\|K4AW01\|K4AW01_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g057900.2.1}
TAIR10	AT3G17205.2	2E-162	ubiquitin protein ligase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	83627593	83637894	+
GWHAAZE00000003	mRNA	83627593	83637894	+
GWHAAZE00000003	exon	83627593	83627601	+
GWHAAZE00000003	exon	83628078	83628212	+
GWHAAZE00000003	exon	83628387	83628470	+
GWHAAZE00000003	exon	83628555	83628641	+
GWHAAZE00000003	exon	83628810	83628950	+
GWHAAZE00000003	exon	83629121	83629225	+
GWHAAZE00000003	exon	83629443	83629548	+
GWHAAZE00000003	exon	83630937	83631115	+
GWHAAZE00000003	exon	83631958	83632209	+
GWHAAZE00000003	exon	83632291	83632380	+
GWHAAZE00000003	exon	83634327	83634407	+
GWHAAZE00000003	exon	83634638	83634711	+
GWHAAZE00000003	exon	83635581	83635823	+
GWHAAZE00000003	exon	83636773	83636844	+
GWHAAZE00000003	exon	83636956	83637075	+
GWHAAZE00000003	exon	83637828	83637894	+
GWHAAZE00000003	CDS	83627593	83627601	+
GWHAAZE00000003	CDS	83628078	83628212	+
GWHAAZE00000003	CDS	83628387	83628470	+
GWHAAZE00000003	CDS	83628555	83628641	+
GWHAAZE00000003	CDS	83628810	83628950	+
GWHAAZE00000003	CDS	83629121	83629225	+
GWHAAZE00000003	CDS	83629443	83629548	+
GWHAAZE00000003	CDS	83630937	83631115	+
GWHAAZE00000003	CDS	83631958	83632209	+
GWHAAZE00000003	CDS	83632291	83632380	+
GWHAAZE00000003	CDS	83634327	83634407	+
GWHAAZE00000003	CDS	83634638	83634711	+
GWHAAZE00000003	CDS	83635581	83635823	+
GWHAAZE00000003	CDS	83636773	83636844	+
GWHAAZE00000003	CDS	83636956	83637075	+
GWHAAZE00000003	CDS	83637828	83637894	+

Transcript Sequence
>GWHTAAZE012336 ATGAATATGGCATTATGGCAGATCCTGTGGCTGAATCCTGTGGTGGCTCCCAAGTCTGCCACCAATATCTTCACTCTAAAGCGGCATCCTCTAGAGTTTATACAGCATCGGGTTGGCATTGTAGCTTCCGAGCTCCTATCACAGTTGCAAGATTGGAACAATAGAAGGCAGTTTACACCCCCAAGTGATTTCCATGCAGATGGTGTCAATGAGTACTTCATTTCCCAGGCCATGCAAGAAAATACCAGAGCAAATGACATACTAAAACAAGCTCCATTCTTGGTTCCATTTACAAGCAGAGTTAAAATATTTACTTCACAGCTGGCTGCAATGAAGGAAAGGCATGGATCTCATGCTGCTTTTGCCAGAACTAGATTCAGAATAAGAAGAGATCATATTTTGGAAGATGCTTTTAATCAGTTGAGCACATTATCAGAAGAGGATCTTCGAGGACTGATTCGTGTTACCTTTGTCAATGAATTTGGAGTAGAGGAGGCTGGTATTGATGGTGGTGGAATTTTCAAAGATTTTATGGAGAATATCACTCGAGCAGCTTTTGATGAAACGACTGATCACCTACTCTATCCCAATCCTGGGTCAGGAATGATACATGAACAGCATCTCCAGTTTTTCCATTTCCTTGGAACTATTCTTGCAAAGGTATGTGTGGATTTCTCTGTGTTAGACAATTGTTTGGCCTTCACAGAGGTACTCAAATTAACAGGCTGGTATACATTCCAAATTTTTTTAACCTTTTCTTTATTAAATTTGCTCCTTAGGTACAATTATTTGAATGACTTGCCATCTCTGGATCCAGAATTATACCGCCATCTTATTTTCTTAAAGAATGTGGAATTATTCCCTTGGTTTCTTGTATCTCTTGCATTCATTCTTTTCCGTCCAACACCTTTTCTTTCTTTTGTACAGCATTATAAGGATGACTTATCGGATTTAGAATTGTACTTCGTTATTGTTAATAATGAATATGGGGAGCAAACTGTCGAAGAACTGTTACCAGGAGGAAAGAATATACGCGTTACTAATGAGAACGTCATCACATTTATTCATCTTGTAGCAAACCATCGTCTAAATTTTCAGATACGTCAACAAAGTTCTCATTTCTTGAGGGGGTTTCAACAGCTTATACAAAAAGAATGGATTGACATGTTTAATGAACATGAGCTTCAGCTTCTGATATCTGGATCAGTTGACGGATTTGATGTTGACGACCTCCGTTCTCATGCCAATTATGCAGGTGGCTATCATCGTGAACACTATGTCATTGAAATGTTCTGGGAAGTTCTGAAAAACTTTTCAATGGAAAATCAGAGGAAATTTTTGAATCGACGTTGCCCAGCTCCTCCAGTCGACGTCTCTCCTCTGTTTTCTTCTCCACTCGACGTGTCTTGGGAGGTTTTCTCCTCCACTGGACGGCTCTCCTCTGTTTTTTCCAGAACACTCGACGTGTTCTGCTCCGTTTTCTCCTCCACTCGACGTTCCTCAAGATGTAGAAAGATGGTGGTCGCCTGGTCGGTAGTGGAAGATGGAGAGGGCTGGATAGGGTTTAAAATTGATCGATATAACAAGTTTGTGACTGGTTGCTCTCGAGGACCCTTGCTTGGATTTAAATATTTGGAACCTTTGTTTTGCATACAGAGGGCTGCTGGTAATGCTTCTGAAGAAGCTCTTGATCGATTACCAACATCAGCTACTTGTATGAATCTTTTAAAGCTTCCCCCATATAGAAGGTTTGTTCCAGTTCTGTACTCGTCTAAAATCAAGGAGCAAATGGAGCAGAAACTGTTGTATGCCATAAATGCTGATGCGGGTTTCGATTTGAGCTGA

Network for GWHGAAZE012322

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00632.26	HECT	186	447	6.60E-46
PF00632.26	HECT	529	614	3.40E-18

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	HECT

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0004842	molecular_function	ubiquitin-protein transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.276
	SRR3591706	second leaf	11.616
	SRR3591707	mature leaf	13.168
	SRR3591708	Shoot apex	15.148
	SRR3591709	Stem	23.666
	SRR3591710	White floral bud	21.959
	SRR3591711	White flower	29.170
	SRR3591712	Green floral bud	21.883
	SRR3591713	Yellow flower	28.497
SRP173429	SRR8316895	Juvenile bud stage	10.874
	SRR8316896	Juvenile bud stage	17.225
	SRR8316897	Juvenile bud stage	9.946
	SRR8316894	Third green stage	8.331
	SRR8316900	Third green stage	19.920
	SRR8316901	Third green stage	17.352
	SRR8316898	Complete white stage	8.008
	SRR8316899	Complete white stage	27.430
	SRR8316903	Complete white stage	13.444
	SRR8316902	Silver flowering stage	11.943
	SRR8316904	Silver flowering stage	21.741
	SRR8316905	Silver flowering stage	8.395
	SRR8316906	Gold flowering stage	32.103
	SRR8316907	Gold flowering stage	26.968
	SRR8316908	Gold flowering stage	30.991
SRP132670	SRR6706286	Control	9.739
	SRR6706287	Light intensity 50%	11.103
	SRR6706288	Light intensity 20%	10.876
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.376
	CNS0095593	Slightly white alabastrum(diploid) 2	10.665
	CNS0095594	Slightly white alabastrum(diploid) 3	13.009
	CNS0095595	Whole white alabastrum(diploid) 2	9.636
	CNS0095596	Whole white alabastrum(diploid) 3	9.990
	CNS0095597	Whole white alabastrum(diploid) 4	12.666
	CNS0095598	Silvery flower (diploied) 1	12.951
	CNS0095599	Silvery flower (diploied) 2	9.441
	CNS0095600	Silvery flower (diploied) 3	27.850
	CNS0095601	Golden flower (diploid) 1	13.422
	CNS0095602	Golden flower (diploid) 2	25.617
	CNS0095603	Golden flower (diploid) 3	23.538
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.453
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.327
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.251
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.500
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.836
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.508
	CNS0095610	Silvery flower (diploied) 1	27.429
	CNS0095611	Silvery flower (diploied) 2	28.725
	CNS0095612	Silvery flower (diploied) 3	25.570
	CNS0095613	Golden flower (tetraploid) 1	14.929
	CNS0095614	Golden flower (tetraploid) 2	21.192
	CNS0095615	Golden flower (tetraploid) 3	27.180
CRA001975	CRR073297	Stem 1	9.291
	CRR073298	Stem 2	7.781
	CRR073299	Stem 3	6.108
	CRR073300	Leaf 1	9.276
	CRR073301	Leaf 2	8.310
	CRR073302	Leaf 3	5.406
	CRR073303	Juvenile bud 1	8.810
	CRR073304	Juvenile bud 2	5.239
	CRR073305	Juvenile bud 3	8.230
	CRR073306	Third green 1	2.952
	CRR073307	Third green 2	3.648
	CRR073308	Third green 3	4.280
	CRR073309	Second white 1	5.517
	CRR073310	Second white 2	8.375
	CRR073311	Second white 3	8.120
	CRR073312	Silver flowering 1	6.136
	CRR073313	Silver flowering 2	6.265
	CRR073314	Silver flowering 3	7.808
	CRR073315	Gold flowering 1	4.026
	CRR073316	Gold flowering 2	7.521
	CRR073317	Gold flowering 3	3.606
	CRR073318	Tawny withering 1	8.795
	CRR073319	Tawny withering 2	8.208
	CRR073320	Tawny withering 3	7.055