Gene detail

Detail information of GWHGAAZE012345

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010027125.1	0	PREDICTED: pectinesterase-like [Eucalyptus grandis]
Swissprot	tr\|Q3E8Z8\|PME28_ARATH	1E-164	Pectinesterase 28
trEMBL	tr\|M1B005\|M1B005_SOLTU	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT5G27870.1	5E-133	Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	84049810	84051979	+
GWHAAZE00000003	mRNA	84049810	84051979	+
GWHAAZE00000003	exon	84049810	84050831	+
GWHAAZE00000003	exon	84051208	84051979	+
GWHAAZE00000003	CDS	84049810	84050831	+
GWHAAZE00000003	CDS	84051208	84051979	+

Transcript Sequence
>GWHTAAZE012359 ATGGGAAAAAGAGGCAAGTATATTGCCATCGCAGTCTCCGGCATCCTCGTGGTGGCAGTAGCCATCGGAGTTATAGTTGGCGTAACCCAACACAACAAGAAAAGTGGTGATGATGACGAGAAGGCCTTGTCCAGCACTACGAAATCCATCGCTAGCATTTGCTCACAAACCGATTACAAGAAAACGTGCGTGGAAAGCCTAAGCTCGCTCGCCAATAACGACAGTGCGACCCCAAAGGATTACTTCCAAACTGCTATTCAAGTAACCATTGACGAGGTCAAAGCTGCAATGGAAAAATCCGGAACCATCGGTAAAGCTTCAAAGGACCCAGCCCATAAAATGGCAGTCGAAGATTGTAAGGATTTGTTGCAATTTGCTGTTGACGAGCTTGAATCGTCCTACTCGACCGTGGGGGATAGTAGCCTCCATAATATGAATGATAGAGCGGCTGAGCTCCAGAATTGGTTAAGTGCGGTGATTTCTTACCAAGATACGTGCGTCGAAGGGTTCATTCGTCCCGATTGGAAAGATGCGATGTCAAATGGGATGGTCAATGCCACGCAGCTCACAGTCAATGCCCTAGCCATGGTTTCGGCCATTTCGGATATTTTGAATGCGTTCAACATTCCGGTGAACACAAGTAGCAATAGTGGGGGTTATCGACGGCTTCTTGAAAGTCCCAGAGTTGACAACAACGGATACCCCGCTTGGTTTACGTCTGTGGATCGAAAATTGTTAGCAAGCAACAACAATGCCGGATTGACACCCAATGCGGTGGTAGCTAAAGACGGAAGCGGACAATATAGCACAATCGGTGCGGCACTTGCCGCTTATCCCAAGAGCAATAAAGGGAGATATGTTATATATATAAAAGCAGGGATTTATCAAGAATATGTAACCGTTACAAAGGACCAAACTAATGTGTTCATCTATGGAGATGGACCTCGGAAGACCATTGTCACTGGAAGCAAAAGCATGTCTCGCAATGGTTTAGCCCCCTTCAGAAGTGCTTCTTTTGGTGAATTCAAACCTTTTGATGTCTGGGTTTTTTTAAGACAACTACAGTCTAACAAAGGTAACGAATCTGAACATGCAGCCACTGTTGGCAGCGGTTTCATAGCCAAAGCAATAGGATTTCAAAACACAGCAGGACCCGAGGGACACCAGGCCGTGGCACTTCGTAGCCAGTCAGACATGTCTGCCTTCTACAATTGCAGAATGGATGGATACCAAGACACATTGTACATGCAAACCCATCGCCAATTTTACCGAAACTGTGTCATCTCGGGCACGGTCGATTTCATCTTTGGTGATGCGGCTGCAGTAATCCAAAACAGTTTGATCATTGTACGAAAACCAATGGACAATCAACAAAACACTGTGACCGCTCAAGGAAGAACCCAGAGTCGAGAGACTACTGGTTTGGTCATCCAGAACTGTCGAATAGTCCCCGAGCTGAAACTTTCCCCAGTGAGATTCCAAATTCCTACATACTTGGGTCGACCATGGAAGGAATATTCGAGGACTATTATTATGGAAACAACATTGGCTGATTTCATCCAACCAGCTGGATGGTTGGAATGGACGGGGACGTTTGCTCTGGACACGCTGTATTATGCCGAGTATGCAAATCGCGGTCCAGGTGCCAATACTGATAAGAGGGTGAAGTGGAAGGGCTACAGGGTGATCACAAACAGAAACGAAGTTCTTCAATTCACAGCTGGTCCGTTTATCCAAGGAGACCAGTGGTTGAGTAGTACTGGTTCACCATTTATACTAGGACTGAAGAACTAA

Network for GWHGAAZE012345

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04043.16	PMEI	49	196	4.80E-29
PF01095.20	Pectinesterase	257	340	8.20E-25
PF01095.20	Pectinesterase	361	581	3.00E-106

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0004857	molecular_function	enzyme inhibitor activity
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.341
	SRR3591706	second leaf	2.608
	SRR3591707	mature leaf	4.364
	SRR3591708	Shoot apex	3.163
	SRR3591709	Stem	3.623
	SRR3591710	White floral bud	50.699
	SRR3591711	White flower	4.281
	SRR3591712	Green floral bud	171.330
	SRR3591713	Yellow flower	1.771
SRP173429	SRR8316895	Juvenile bud stage	5.138
	SRR8316896	Juvenile bud stage	4.292
	SRR8316897	Juvenile bud stage	8.865
	SRR8316894	Third green stage	5.142
	SRR8316900	Third green stage	102.241
	SRR8316901	Third green stage	80.246
	SRR8316898	Complete white stage	2.019
	SRR8316899	Complete white stage	10.781
	SRR8316903	Complete white stage	3.418
	SRR8316902	Silver flowering stage	3.344
	SRR8316904	Silver flowering stage	4.993
	SRR8316905	Silver flowering stage	2.332
	SRR8316906	Gold flowering stage	5.396
	SRR8316907	Gold flowering stage	4.476
	SRR8316908	Gold flowering stage	4.277
SRP132670	SRR6706286	Control	92.345
	SRR6706287	Light intensity 50%	84.791
	SRR6706288	Light intensity 20%	77.861
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.053
	CNS0095593	Slightly white alabastrum(diploid) 2	24.295
	CNS0095594	Slightly white alabastrum(diploid) 3	19.028
	CNS0095595	Whole white alabastrum(diploid) 2	140.425
	CNS0095596	Whole white alabastrum(diploid) 3	177.931
	CNS0095597	Whole white alabastrum(diploid) 4	175.626
	CNS0095598	Silvery flower (diploied) 1	9.167
	CNS0095599	Silvery flower (diploied) 2	23.793
	CNS0095600	Silvery flower (diploied) 3	10.691
	CNS0095601	Golden flower (diploid) 1	12.268
	CNS0095602	Golden flower (diploid) 2	15.461
	CNS0095603	Golden flower (diploid) 3	12.990
	CNS0095604	Slightly white alabastrum(tetraploid) 1	111.513
	CNS0095605	Slightly white alabastrum(tetraploid) 2	111.625
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.626
	CNS0095607	Whole white alabastrum(tetraploid) 1	310.550
	CNS0095608	Whole white alabastrum(tetraploid) 2	439.484
	CNS0095609	Whole white alabastrum(tetraploid) 3	192.247
	CNS0095610	Silvery flower (diploied) 1	7.011
	CNS0095611	Silvery flower (diploied) 2	11.639
	CNS0095612	Silvery flower (diploied) 3	21.578
	CNS0095613	Golden flower (tetraploid) 1	4.850
	CNS0095614	Golden flower (tetraploid) 2	4.200
	CNS0095615	Golden flower (tetraploid) 3	14.644
CRA001975	CRR073297	Stem 1	11.862
	CRR073298	Stem 2	10.208
	CRR073299	Stem 3	7.901
	CRR073300	Leaf 1	138.679
	CRR073301	Leaf 2	96.310
	CRR073302	Leaf 3	50.512
	CRR073303	Juvenile bud 1	152.250
	CRR073304	Juvenile bud 2	172.590
	CRR073305	Juvenile bud 3	13.418
	CRR073306	Third green 1	54.650
	CRR073307	Third green 2	72.522
	CRR073308	Third green 3	51.506
	CRR073309	Second white 1	6.986
	CRR073310	Second white 2	9.672
	CRR073311	Second white 3	11.566
	CRR073312	Silver flowering 1	53.006
	CRR073313	Silver flowering 2	62.609
	CRR073314	Silver flowering 3	26.308
	CRR073315	Gold flowering 1	60.066
	CRR073316	Gold flowering 2	18.543
	CRR073317	Gold flowering 3	47.342
	CRR073318	Tawny withering 1	44.394
	CRR073319	Tawny withering 2	61.570
	CRR073320	Tawny withering 3	39.521