Gene detail

Detail information of GWHGAAZE012379

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011070473.1	PREDICTED: biotin carboxylase 2, chloroplastic [Sesamum indicum]
Swissprot	tr\|B9HBA8\|ACCC1_POPTR	Biotin carboxylase 1, chloroplastic (Precursor)
trEMBL	tr\|A0A068VC76\|A0A068VC76_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_237 {ECO:0000313\|EMBL:CDP18455.1}
TAIR10	AT5G35360.1	acetyl Co-enzyme a carboxylase biotin carboxylase subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	84612717	84623435	+
GWHAAZE00000003	mRNA	84612717	84623435	+
GWHAAZE00000003	exon	84612717	84612822	+
GWHAAZE00000003	exon	84612950	84613020	+
GWHAAZE00000003	exon	84614414	84614745	+
GWHAAZE00000003	exon	84615988	84616129	+
GWHAAZE00000003	exon	84616336	84616434	+
GWHAAZE00000003	exon	84616539	84616651	+
GWHAAZE00000003	exon	84616796	84616916	+
GWHAAZE00000003	exon	84617156	84617245	+
GWHAAZE00000003	exon	84617679	84617738	+
GWHAAZE00000003	exon	84617880	84618065	+
GWHAAZE00000003	exon	84618172	84618264	+
GWHAAZE00000003	exon	84618352	84618433	+
GWHAAZE00000003	exon	84618714	84618820	+
GWHAAZE00000003	exon	84622516	84622591	+
GWHAAZE00000003	exon	84622909	84622955	+
GWHAAZE00000003	exon	84623081	84623143	+
GWHAAZE00000003	exon	84623379	84623435	+
GWHAAZE00000003	five_prime_UTR	84612717	84612822	+
GWHAAZE00000003	five_prime_UTR	84612950	84612969	+
GWHAAZE00000003	CDS	84612970	84613020	+
GWHAAZE00000003	CDS	84614414	84614745	+
GWHAAZE00000003	CDS	84615988	84616129	+
GWHAAZE00000003	CDS	84616336	84616434	+
GWHAAZE00000003	CDS	84616539	84616651	+
GWHAAZE00000003	CDS	84616796	84616916	+
GWHAAZE00000003	CDS	84617156	84617245	+
GWHAAZE00000003	CDS	84617679	84617738	+
GWHAAZE00000003	CDS	84617880	84618065	+
GWHAAZE00000003	CDS	84618172	84618264	+
GWHAAZE00000003	CDS	84618352	84618433	+
GWHAAZE00000003	CDS	84618714	84618820	+
GWHAAZE00000003	CDS	84622516	84622591	+
GWHAAZE00000003	CDS	84622909	84622955	+
GWHAAZE00000003	CDS	84623081	84623143	+
GWHAAZE00000003	CDS	84623379	84623435	+

Transcript Sequence
>GWHTAAZE012393 CATCGACAATCTCCTCCATTTTCTTCACACTCTTCCTCTCACAGACGAACCACTCTACCTTCCTCAAAACCTAACCTCCGTAGCTGATTCATTCACATTTCCACAGGTCGCACATTTGATCTGAAGATGGACTCGGCTGCCATGACGTTTTGCAGCAAATCTGTATACCCTGCTCCTTGCAAGGGATTATTCGTAACAAGAGCTGGTGGAATTAGGAGTTCTCGGTCTAGCTTTATGGTGGGAAGTCAGGTTCACTTCCCGAAGCAGAGAACTCAGGCCTCTAAAGTTATTCATAAAGAGGGAAAACGTGGGGGAGTTCTCAACGTTACATGTCGTGCTGAAAAAATTTTGGTTGCAAACAGAGGAGAAATTGCTGTTCGTGTGATTCGAACCGCTCATGAGATGGGTATACCTTGTGTTGCAGTTTATTCAACCATAGATAAGGATGCACTTCATGTGAAAATGGCCGATGAATCGGTTTGCATAGGTGAAGCACCAAGTAGTCAATCGTATTTAGTGGTCCCAAATGTCCTTTCTGCTGCTTTGAGCAGTAGCTGTACTATGCTTCATCCTGGATATGGTTTCCTAGCTGAAAATGCAGTTTTTGTTGAAATGTGTGGAGAGCATAGTATCAACTTTATTGGGCCAAATCCCAGCAGTATACGTGTAATGGGTGACAAAGCCACCGCCAGAGAAACGATGAAGAATGCTGGTGTTCCAACTGTTCCTGGAAGTGAGGGACTTTTACGGAGCACAGAAGAAGCTGTCAGGCTTGCTGCTGAGATTGGCTTCCCTGTGATGATTAAGGTAACCATTCTCATACCCCTGACAATTAAAAGCTTTCAGAATATTGAAACTTTGTTAAAAAAAGAGATTGAGAGTAACTTATTATTGTTATTTTGTTCTTTGAAGGCAACAGCTGGCGGTGGAGGACGTGGAATGCGTCTTGCTAAAGAGCCTGATGAGTTTGTGAAGTTATTGCAGCAAGCTAAGAGTGAGGCTGCAGCAGCATTTGGAAATGATGGTGTTTATCTGGAGAAATACGTTCAAAATCCAAGGCACATTGAGTTCCAGGTTCTTGCTGACAAGTTTGGTAATGTTGTTCACTTTGGAGAGCGTGACTGCAGTATTCAGAGAAGGAACCAGAAATTGCTGGAAGAAGCACCTTCCCCTGCATTAACCCCTGAGTTGAGGAAAGCAATGGGTGATGCAGCGGTTGCAGCAGCAGCATCTATAGGTTACATTGGTGTGGGAACTGTTGAGTTCCTTTTGGATGAAAGAGGGTCCTTTTACTTCATGGAAATGAACACCAGGATCCAGGTGGAGCATCCCGTGACAGAAATGATATATTCTGTTGACCTGATTGAAGAACAAATCCGGGTAGCTATGGGAGAGAAACTCCGGTACAAACAGGAAGATATTGTGCTTAGAGGACATTCAATTGAATGCCGTATTAATGCTGAAGACGCTTTCAAAAATTTCAGACCTGGTCCAGGGAGAATAACAGCATACTTGCCAGCTGGAGGTGCATTTGTGAGAATGGATAGCCATATTTATCCTGATTACGTGGTTCCACCAAGCTATGATTCCCTACTTGGAAAGCTTATTGTATGGGCTCCAACAAGACAGAAGGCAATTGAACGCATGAAAAGGGCTCTTGATGAGACTATTATTAGAGGGGTTCCCACTACAATCGAATACCATAAACTTATCCTTGAGGTTGAGGACTTCAAAAATGGAAAAGTTGATACTGCTTTTATTCCAAAGCATGAAGACGAGTTAGCTGCGCCCCTGGATTTGGAGGCAGCAACTTCTGCTGAAGAGCTTGCCCAAGCTGCAGCTTAG

Network for GWHGAAZE012379

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00289.23	Biotin_carb_N	72	179	2.70E-39
PF02786.18	CPSase_L_D2	184	229	1.00E-08
PF02786.18	CPSase_L_D2	261	426	3.40E-65
PF02785.20	Biotin_carb_C	440	545	5.40E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01961	accC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Fatty acid metabolism	map01212
		Pyruvate metabolism	map00620
		Propanoate metabolism	map00640
		Carbon fixation pathways in prokaryotes	map00720
		Fatty acid biosynthesis	map00061

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	68.041
	SRR3591706	second leaf	63.711
	SRR3591707	mature leaf	9.935
	SRR3591708	Shoot apex	59.952
	SRR3591709	Stem	25.110
	SRR3591710	White floral bud	29.498
	SRR3591711	White flower	30.824
	SRR3591712	Green floral bud	52.910
	SRR3591713	Yellow flower	32.467
SRP173429	SRR8316895	Juvenile bud stage	27.198
	SRR8316896	Juvenile bud stage	37.387
	SRR8316897	Juvenile bud stage	22.400
	SRR8316894	Third green stage	20.022
	SRR8316900	Third green stage	70.171
	SRR8316901	Third green stage	55.048
	SRR8316898	Complete white stage	18.065
	SRR8316899	Complete white stage	46.864
	SRR8316903	Complete white stage	22.809
	SRR8316902	Silver flowering stage	14.866
	SRR8316904	Silver flowering stage	23.134
	SRR8316905	Silver flowering stage	11.168
	SRR8316906	Gold flowering stage	28.966
	SRR8316907	Gold flowering stage	35.427
	SRR8316908	Gold flowering stage	36.699
SRP132670	SRR6706286	Control	50.940
	SRR6706287	Light intensity 50%	58.640
	SRR6706288	Light intensity 20%	69.320
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.192
	CNS0095593	Slightly white alabastrum(diploid) 2	27.732
	CNS0095594	Slightly white alabastrum(diploid) 3	23.390
	CNS0095595	Whole white alabastrum(diploid) 2	28.024
	CNS0095596	Whole white alabastrum(diploid) 3	29.581
	CNS0095597	Whole white alabastrum(diploid) 4	22.783
	CNS0095598	Silvery flower (diploied) 1	20.752
	CNS0095599	Silvery flower (diploied) 2	21.475
	CNS0095600	Silvery flower (diploied) 3	38.071
	CNS0095601	Golden flower (diploid) 1	15.188
	CNS0095602	Golden flower (diploid) 2	26.503
	CNS0095603	Golden flower (diploid) 3	26.283
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.702
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.808
	CNS0095606	Slightly white alabastrum(tetraploid) 3	68.976
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.962
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.739
	CNS0095609	Whole white alabastrum(tetraploid) 3	68.161
	CNS0095610	Silvery flower (diploied) 1	38.042
	CNS0095611	Silvery flower (diploied) 2	41.605
	CNS0095612	Silvery flower (diploied) 3	39.602
	CNS0095613	Golden flower (tetraploid) 1	15.544
	CNS0095614	Golden flower (tetraploid) 2	27.553
	CNS0095615	Golden flower (tetraploid) 3	17.582
CRA001975	CRR073297	Stem 1	52.007
	CRR073298	Stem 2	48.464
	CRR073299	Stem 3	46.950
	CRR073300	Leaf 1	60.052
	CRR073301	Leaf 2	54.400
	CRR073302	Leaf 3	74.506
	CRR073303	Juvenile bud 1	69.794
	CRR073304	Juvenile bud 2	61.037
	CRR073305	Juvenile bud 3	50.652
	CRR073306	Third green 1	22.150
	CRR073307	Third green 2	20.281
	CRR073308	Third green 3	21.963
	CRR073309	Second white 1	23.130
	CRR073310	Second white 2	21.107
	CRR073311	Second white 3	17.231
	CRR073312	Silver flowering 1	13.678
	CRR073313	Silver flowering 2	15.256
	CRR073314	Silver flowering 3	13.923
	CRR073315	Gold flowering 1	20.423
	CRR073316	Gold flowering 2	28.610
	CRR073317	Gold flowering 3	16.432
	CRR073318	Tawny withering 1	35.076
	CRR073319	Tawny withering 2	18.506
	CRR073320	Tawny withering 3	50.371