Gene detail

Detail information of GWHGAAZE012416

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011030956.1	0	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Populus euphratica]
Swissprot	tr\|O81832\|Y4729_ARATH	1E-157	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor)
trEMBL	tr\|A0A068UCP1\|A0A068UCP1_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_16 {ECO:0000313\|EMBL:CDP05413.1}
TAIR10	AT4G27290.1	8E-128	S-locus lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	85131268	85134549	+
GWHAAZE00000003	mRNA	85131268	85134549	+
GWHAAZE00000003	exon	85131268	85132480	+
GWHAAZE00000003	exon	85133213	85133311	+
GWHAAZE00000003	exon	85134311	85134549	+
GWHAAZE00000003	CDS	85131268	85132480	+
GWHAAZE00000003	CDS	85133213	85133311	+
GWHAAZE00000003	CDS	85134311	85134549	+

Transcript Sequence
>GWHTAAZE012430 ATGCCCTCCATTGCAGTGGACACCATAACCACAACTCAATCACTTACAGATGGAAACACCTTAGTTTCATCTGGTGGAACCTTTGAACTAGGATTTTTCAGCCCGGATAGCTCAAAGTACCGCTACTTGGGCATATGGTACAAGAAAGTTTCTACTCCTACTATTGTTTGGGTTGCAAATAGAGATACTCCTCTCACTGATACATCCGGTTCTTTAAATGTCACGAACCAAGGAATTCTCGCTCTTATCAATGGCACAAACAGCATCATTTGGTCCTCGAATTCGTCAAGATCAATGCAGAATCCAGTCGGTCTACTTTTGGAATCGGGAAATTTTGTTGTGAAAGATGCTAACGGCAATGAGAATTACCATTGGCAAAGTTTTGATTATCCTTGTGATACGCTTATGCCTGGAATGAAGCTTGGAAGGGACTTGATAACCGGTTTAGACCGCTATTTATGGTCACGGAAGGCTAGTAATGACCTGTCTAGAGGTGCCTTCATTTTTCGACTCGATCCCAATGGATTTCCACAGTTAATCCTGACAAATGATTCGGTTGAGCAGTTCAGGTCCGGACCATGGAACGGTCGATGGTTTAGTGGCTCACCGGGTTTAAAGCCCAATCCTATTTATACATATGGTTTTATTTTTGACCAGAAAGAGATGTACTATGGCTTTGATCTTGTTAACAGCTCTGTTTACTCAAGGCTGCAGTTGTCTCCTAATGGAATCGTACAGCGGTTCACTTGGAATATTAATACCCAGGGTTGGGTTCCTTACTTGAGTGCACCGGCTGATAACTGTGATACTTATGCTTTGTGTCATTCATATGGGAGCTGTGACATTAGCGACTCTCCGGTTTGCGGGTGTTTGGATAAGTTTGTGCCAAAAGACCCAACAGAATGGAAAAGGGCAGATTGGTCAAATGGGTGCCTTAGGAGAACAGAGTTGGATTGCGAAAATGGTGATGGATTTGTGAAGTACTCAGGTTTTAAATTACCGGATACGCGAGATTCTTGGTTTAACAGGAGCATGAGCCTCGAGGAATGCCATAAAGTGTGCTTGGGGAACTGTTCTTGTATGGCTTACGCAAATTTAGACACAAGGGAAGGAGGAAGCGGATGCTTGCTTTGGTTTGATGACCTGATTGACATGAGAGTAATGCCTGAGGATGGGGAAGATATCTATATAAGGATGGCCTCGTCCGAGTTAGCAATGCTTCTGCTAGGCCTGAGCATGACCTGGTATGTATGGAAGAGAAAGAAGGAGAAGAGAAAGGAGCAGCAGCAACAGGAAATGCTAAGGCAAGAAGATAAAGCCCGGACCACATTATTGGATTGGCCTAAGCGCTTCAATATTATCAATGGGATTGCCCGAGGCCTTCTTTATCTTCACCAGGATTCCCGACTAAGAATTATCCACAGAGACCTTAAAGCTGCTAATGTTTTGCTAGATATTGACATGAACCCAAAAATATCAGATTTTGGCATGGCCAGAATTTTTGGAGGAAATGAAACTGCAGCAAACACGCAGAGAATTGTTGGAACATAG

Network for GWHGAAZE012416

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01453.25	B_lectin	54	157	8.10E-36
PF00954.21	S_locus_glycop	189	297	2.30E-28
PF08276.12	PAN_2	319	385	1.20E-21
PF00069.26	Pkinase	449	515	3.30E-13

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0048544	biological_process	recognition of pollen
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.828
	SRR3591706	second leaf	0.147
	SRR3591707	mature leaf	0.958
	SRR3591708	Shoot apex	1.903
	SRR3591709	Stem	1.312
	SRR3591710	White floral bud	1.469
	SRR3591711	White flower	1.436
	SRR3591712	Green floral bud	0.600
	SRR3591713	Yellow flower	5.289
SRP173429	SRR8316895	Juvenile bud stage	0.954
	SRR8316896	Juvenile bud stage	0.709
	SRR8316897	Juvenile bud stage	0.355
	SRR8316894	Third green stage	0.248
	SRR8316900	Third green stage	0.373
	SRR8316901	Third green stage	0.235
	SRR8316898	Complete white stage	0.055
	SRR8316899	Complete white stage	0.940
	SRR8316903	Complete white stage	0.096
	SRR8316902	Silver flowering stage	0.093
	SRR8316904	Silver flowering stage	0.300
	SRR8316905	Silver flowering stage	0.042
	SRR8316906	Gold flowering stage	1.658
	SRR8316907	Gold flowering stage	0.334
	SRR8316908	Gold flowering stage	1.559
SRP132670	SRR6706286	Control	0.146
	SRR6706287	Light intensity 50%	0.266
	SRR6706288	Light intensity 20%	0.294
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.429
	CNS0095593	Slightly white alabastrum(diploid) 2	0.350
	CNS0095594	Slightly white alabastrum(diploid) 3	0.361
	CNS0095595	Whole white alabastrum(diploid) 2	0.387
	CNS0095596	Whole white alabastrum(diploid) 3	0.214
	CNS0095597	Whole white alabastrum(diploid) 4	0.195
	CNS0095598	Silvery flower (diploied) 1	0.506
	CNS0095599	Silvery flower (diploied) 2	0.476
	CNS0095600	Silvery flower (diploied) 3	0.329
	CNS0095601	Golden flower (diploid) 1	0.622
	CNS0095602	Golden flower (diploid) 2	0.693
	CNS0095603	Golden flower (diploid) 3	0.401
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.804
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.289
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.243
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.078
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.276
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.974
	CNS0095610	Silvery flower (diploied) 1	1.163
	CNS0095611	Silvery flower (diploied) 2	0.825
	CNS0095612	Silvery flower (diploied) 3	1.030
	CNS0095613	Golden flower (tetraploid) 1	1.463
	CNS0095614	Golden flower (tetraploid) 2	1.476
	CNS0095615	Golden flower (tetraploid) 3	1.944
CRA001975	CRR073297	Stem 1	0.736
	CRR073298	Stem 2	0.177
	CRR073299	Stem 3	0.877
	CRR073300	Leaf 1	0.161
	CRR073301	Leaf 2	0.237
	CRR073302	Leaf 3	0.041
	CRR073303	Juvenile bud 1	0.103
	CRR073304	Juvenile bud 2	0.043
	CRR073305	Juvenile bud 3	0.307
	CRR073306	Third green 1	0.029
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.142
	CRR073310	Second white 2	0.361
	CRR073311	Second white 3	0.226
	CRR073312	Silver flowering 1	0.156
	CRR073313	Silver flowering 2	0.153
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.276
	CRR073316	Gold flowering 2	0.293
	CRR073317	Gold flowering 3	0.762
	CRR073318	Tawny withering 1	0.688
	CRR073319	Tawny withering 2	1.197
	CRR073320	Tawny withering 3	0.174