Detail information of GWHGAAZE012448


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009601923.10PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic [Nicotiana tomentosiformis]
Swissprottr|Q66GP4|PP379_ARATH0Pentatricopeptide repeat-containing protein At5g13770, chloroplastic (Precursor)
trEMBLtr|V4S0X7|V4S0X7_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR33932.1}
TAIR10AT5G13770.12E-169Pentatricopeptide repeat (PPR-like) superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8554369685545420-
GWHAAZE00000003mRNA8554369685545420-
GWHAAZE00000003exon8554369685545420-
GWHAAZE00000003CDS8554369685545420-
Transcript Sequence

Network for GWHGAAZE012448

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.21PPR2342596.40E-05
PF13812.7PPR_33203780.00075
PF13812.7PPR_33904505.50E-12
PF13812.7PPR_34534840.0041
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.870
SRR3591706second leaf39.666
SRR3591707mature leaf47.020
SRR3591708Shoot apex25.867
SRR3591709Stem9.395
SRR3591710White floral bud1.521
SRR3591711White flower2.311
SRR3591712Green floral bud1.427
SRR3591713Yellow flower0.315
SRP173429 SRR8316895Juvenile bud stage 2.923
SRR8316896Juvenile bud stage 3.111
SRR8316897Juvenile bud stage 0.871
SRR8316894Third green stage 1.494
SRR8316900Third green stage 2.426
SRR8316901Third green stage 1.380
SRR8316898Complete white stage 0.361
SRR8316899Complete white stage 2.484
SRR8316903Complete white stage 1.862
SRR8316902Silver flowering stage0.274
SRR8316904Silver flowering stage0.721
SRR8316905Silver flowering stage0.202
SRR8316906Gold flowering stage 0.567
SRR8316907Gold flowering stage 0.886
SRR8316908Gold flowering stage 0.485
SRP132670SRR6706286Control3.248
SRR6706287Light intensity 50%2.390
SRR6706288Light intensity 20%2.537
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.182
CNS0095593Slightly white alabastrum(diploid) 22.860
CNS0095594Slightly white alabastrum(diploid) 32.054
CNS0095595Whole white alabastrum(diploid) 21.798
CNS0095596Whole white alabastrum(diploid) 31.862
CNS0095597Whole white alabastrum(diploid) 41.141
CNS0095598Silvery flower (diploied) 14.326
CNS0095599Silvery flower (diploied) 22.259
CNS0095600Silvery flower (diploied) 31.251
CNS0095601Golden flower (diploid) 14.700
CNS0095602Golden flower (diploid) 24.103
CNS0095603Golden flower (diploid) 33.815
CNS0095604Slightly white alabastrum(tetraploid) 13.180
CNS0095605Slightly white alabastrum(tetraploid) 22.467
CNS0095606Slightly white alabastrum(tetraploid) 37.313
CNS0095607Whole white alabastrum(tetraploid) 12.024
CNS0095608Whole white alabastrum(tetraploid) 20.984
CNS0095609Whole white alabastrum(tetraploid) 32.113
CNS0095610Silvery flower (diploied) 11.378
CNS0095611Silvery flower (diploied) 22.308
CNS0095612Silvery flower (diploied) 30.628
CNS0095613Golden flower (tetraploid) 10.491
CNS0095614Golden flower (tetraploid) 21.868
CNS0095615Golden flower (tetraploid) 30.511
CRA001975CRR073297Stem 112.245
CRR073298Stem 212.047
CRR073299Stem 39.823
CRR073300Leaf 14.203
CRR073301Leaf 23.526
CRR073302Leaf 33.186
CRR073303Juvenile bud 12.276
CRR073304Juvenile bud 21.208
CRR073305Juvenile bud 32.085
CRR073306Third green 10.162
CRR073307Third green 20.440
CRR073308Third green 30.556
CRR073309Second white 10.241
CRR073310Second white 20.286
CRR073311Second white 30.090
CRR073312Silver flowering 10.217
CRR073313Silver flowering 20.124
CRR073314Silver flowering 30.065
CRR073315Gold flowering 120.567
CRR073316Gold flowering 229.917
CRR073317Gold flowering 319.451
CRR073318Tawny withering 18.919
CRR073319Tawny withering 28.286
CRR073320Tawny withering 36.129