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Detail information of GWHGAAZE012448
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_009601923.1
0
PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic [Nicotiana tomentosiformis]
Swissprot
tr|Q66GP4|PP379_ARATH
0
Pentatricopeptide repeat-containing protein At5g13770, chloroplastic (Precursor)
trEMBL
tr|V4S0X7|V4S0X7_9ROSI
0
Uncharacterized protein {ECO:0000313|EMBL:ESR33932.1}
TAIR10
AT5G13770.1
2E-169
Pentatricopeptide repeat (PPR-like) superfamily protein
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000003
gene
85543696
85545420
-
GWHAAZE00000003
mRNA
85543696
85545420
-
GWHAAZE00000003
exon
85543696
85545420
-
GWHAAZE00000003
CDS
85543696
85545420
-
Transcript Sequence
>GWHTAAZE012462 TCTCTCCTCTGCTCAAATTCGAGCATTTTAACCTCTTACTCCTCAAGCTGCCCGTCACCCATCTTGGAAAACGCCTCCACAAATCCCCCAGTGATCAAATTAGACCTCAATTTACAAGAATTTCAAGGATCTTCAGACCCAAAAACACAAGACTTAAATGGGTTCATTTCCTCTCTTTTTAAAGACCCTCAGACACAACAACTCGGGTTCGAATACTACAAGAAAGCGAAAGAAGATCCCGAGTTTAGACCCAAGAGATCGACGTTAAAGCAAGTAATCAGGTACTTGTTATGCTCAAAAAATTGGAATTCCATTATCTCGATAACAGAGGATTTTAGGAAATTCAATGTATTTCTTGATAGTACTAGTTGTTGTAGATTAATTAGTAGCTGCATTTCGGCTAGGAAATTCAAGGTTGTTAATAATCTTTTGGATATTTTGAAAACTGATAATGAAATTGCGGTTTTGGCCTTTGATTCGGCCATGAAAGGCTATAACAAGCTTCATATGTACCGTAGTACTATTGCAGTTTACCAACGAATGAAATCAAATGGCGTCGTTTTGAACTCCGGATGTTACTTTCGGGTGATGGAAGCATATTTCAAAATGGGCCAAAATGAGAAAATTGGTTCATTGTTTGAAGAATTTCAAAGCAAGAACATTCCTTTGACACAAATTCATACCCAAGTTTATAAAGTTATGTGTGAGTCATTGGGGAAATCGGGCCGACCCTTTGAGGCACTCGAGTTCTTTAGAGAAATGAAGAGGAAGGGTATTCAAGAGGAGCCTTCGTTTTACTCTTTGCTAATTTGTTCATTTGCCAGTGTTAAAGAAGCAAAAATGGCCGAAGAGCTTTTGAAAGAGGCCGAGGGAAAGAAAATGTTGAGGGATCCAGCTGTGTTTTTAAAGCTTGTACTTATGTATGTTGAAGAAGGGTTGATGGAGAAAACTCTTCAAGTTGTTTCATCGATGAAACGGGCAAACATTCGAGTATCCGATTGCATTTTCTGCGCAATTGTCAATGGCTTCTCTAAAAAGAGAGGACCAACGGCTGCAATTAAGGTCTATAAAGAGCTTAACTCGCAGGGATACGAACCTGGCCAAGTAACTTATGCTTCAATTCTAAATGTATATTGTCGACTTGGGCTTTACTCGGAGGCTGAACAGGTTTTCGATGAGATGCTACAAAGAGGTTTCGATAAATGCGTGGTGGCCTATTCTAGCATGATTGCAATGTATGGTAAAACGGGCCGGTTAAGAGAAGCAATGAGGCTTGTGGCGAAGATGAAAGAGAGGGGGTGCAAGCCTAACGTGTGGATTTACAATTCTTTGCTCGATATGCACGGGAAGGTGTTGAATTTAAGGCAAGTCGAAAAGATTTGGAAGGAGATGAAGAGAAGGAAAATTGTACCAGATAAAGTGAGTTATACTAGCATTATAAGCGCATATAGTAAGGCGAGAGAGTACGATACTAGCATTAGATATTACCAAGAGTATAGGCTTAATGGTGGCGTGATCGATCGGGCAATGGCTGGGATAATGGTTGGGGTGTTTTCGAAGTTGAGCCAAGTCGATGAGTTGGTTAGGATATTGCAGGATTTGAAGATGGAGGGGACTAAATTAGATGGGAGGCTTTATAAGTCATCTTTGAATGCTTTGAGGGATGCTGGTCTTGAAATTCAAGCAAAGTGGTTGCAGCAGAACTTTGAAAGTGATTCTTCATAA
Network for GWHGAAZE012448
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF01535.21
PPR
234
259
6.40E-05
PF13812.7
PPR_3
320
378
0.00075
PF13812.7
PPR_3
390
450
5.50E-12
PF13812.7
PPR_3
453
484
0.0041
Protein Sequence
>GWHPAAZE012455 SLLCSNSSILTSYSSSCPSPILENASTNPPVIKLDLNLQEFQGSSDPKTQDLNGFISSLFKDPQTQQLGFEYYKKAKEDPEFRPKRSTLKQVIRYLLCSKNWNSIISITEDFRKFNVFLDSTSCCRLISSCISARKFKVVNNLLDILKTDNEIAVLAFDSAMKGYNKLHMYRSTIAVYQRMKSNGVVLNSGCYFRVMEAYFKMGQNEKIGSLFEEFQSKNIPLTQIHTQVYKVMCESLGKSGRPFEALEFFREMKRKGIQEEPSFYSLLICSFASVKEAKMAEELLKEAEGKKMLRDPAVFLKLVLMYVEEGLMEKTLQVVSSMKRANIRVSDCIFCAIVNGFSKKRGPTAAIKVYKELNSQGYEPGQVTYASILNVYCRLGLYSEAEQVFDEMLQRGFDKCVVAYSSMIAMYGKTGRLREAMRLVAKMKERGCKPNVWIYNSLLDMHGKVLNLRQVEKIWKEMKRRKIVPDKVSYTSIISAYSKAREYDTSIRYYQEYRLNGGVIDRAMAGIMVGVFSKLSQVDELVRILQDLKMEGTKLDGRLYKSSLNALRDAGLEIQAKWLQQNFESDSS
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
--
--
--
--
Gene Ontology
GO term
Ontology
Name
GO:0005515
molecular_function
protein binding
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
11.870
SRR3591706
second leaf
39.666
SRR3591707
mature leaf
47.020
SRR3591708
Shoot apex
25.867
SRR3591709
Stem
9.395
SRR3591710
White floral bud
1.521
SRR3591711
White flower
2.311
SRR3591712
Green floral bud
1.427
SRR3591713
Yellow flower
0.315
SRP173429
SRR8316895
Juvenile bud stage
2.923
SRR8316896
Juvenile bud stage
3.111
SRR8316897
Juvenile bud stage
0.871
SRR8316894
Third green stage
1.494
SRR8316900
Third green stage
2.426
SRR8316901
Third green stage
1.380
SRR8316898
Complete white stage
0.361
SRR8316899
Complete white stage
2.484
SRR8316903
Complete white stage
1.862
SRR8316902
Silver flowering stage
0.274
SRR8316904
Silver flowering stage
0.721
SRR8316905
Silver flowering stage
0.202
SRR8316906
Gold flowering stage
0.567
SRR8316907
Gold flowering stage
0.886
SRR8316908
Gold flowering stage
0.485
SRP132670
SRR6706286
Control
3.248
SRR6706287
Light intensity 50%
2.390
SRR6706288
Light intensity 20%
2.537
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
3.182
CNS0095593
Slightly white alabastrum(diploid) 2
2.860
CNS0095594
Slightly white alabastrum(diploid) 3
2.054
CNS0095595
Whole white alabastrum(diploid) 2
1.798
CNS0095596
Whole white alabastrum(diploid) 3
1.862
CNS0095597
Whole white alabastrum(diploid) 4
1.141
CNS0095598
Silvery flower (diploied) 1
4.326
CNS0095599
Silvery flower (diploied) 2
2.259
CNS0095600
Silvery flower (diploied) 3
1.251
CNS0095601
Golden flower (diploid) 1
4.700
CNS0095602
Golden flower (diploid) 2
4.103
CNS0095603
Golden flower (diploid) 3
3.815
CNS0095604
Slightly white alabastrum(tetraploid) 1
3.180
CNS0095605
Slightly white alabastrum(tetraploid) 2
2.467
CNS0095606
Slightly white alabastrum(tetraploid) 3
7.313
CNS0095607
Whole white alabastrum(tetraploid) 1
2.024
CNS0095608
Whole white alabastrum(tetraploid) 2
0.984
CNS0095609
Whole white alabastrum(tetraploid) 3
2.113
CNS0095610
Silvery flower (diploied) 1
1.378
CNS0095611
Silvery flower (diploied) 2
2.308
CNS0095612
Silvery flower (diploied) 3
0.628
CNS0095613
Golden flower (tetraploid) 1
0.491
CNS0095614
Golden flower (tetraploid) 2
1.868
CNS0095615
Golden flower (tetraploid) 3
0.511
CRA001975
CRR073297
Stem 1
12.245
CRR073298
Stem 2
12.047
CRR073299
Stem 3
9.823
CRR073300
Leaf 1
4.203
CRR073301
Leaf 2
3.526
CRR073302
Leaf 3
3.186
CRR073303
Juvenile bud 1
2.276
CRR073304
Juvenile bud 2
1.208
CRR073305
Juvenile bud 3
2.085
CRR073306
Third green 1
0.162
CRR073307
Third green 2
0.440
CRR073308
Third green 3
0.556
CRR073309
Second white 1
0.241
CRR073310
Second white 2
0.286
CRR073311
Second white 3
0.090
CRR073312
Silver flowering 1
0.217
CRR073313
Silver flowering 2
0.124
CRR073314
Silver flowering 3
0.065
CRR073315
Gold flowering 1
20.567
CRR073316
Gold flowering 2
29.917
CRR073317
Gold flowering 3
19.451
CRR073318
Tawny withering 1
8.919
CRR073319
Tawny withering 2
8.286
CRR073320
Tawny withering 3
6.129