Gene detail

Detail information of GWHGAAZE012449

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010260723.1	1.89457E-91	PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X2 [Nelumbo nucifera]
Swissprot	tr\|Q39548\|KSB_CUCMA	1E-73	Ent-kaur-16-ene synthase, chloroplastic (Precursor)
trEMBL	tr\|M9N8R3\|M9N8R3_NICAT	1E-81	Ent-kaurene synthase {ECO:0000313\|EMBL:AFA35953.1}
TAIR10	AT1G79460.1	1E-46	Terpenoid cyclases/Protein prenyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	85568070	85575059	+
GWHAAZE00000003	mRNA	85568070	85575059	+
GWHAAZE00000003	exon	85568070	85568073	+
GWHAAZE00000003	exon	85568568	85568723	+
GWHAAZE00000003	exon	85571931	85572111	+
GWHAAZE00000003	exon	85572388	85572593	+
GWHAAZE00000003	exon	85573646	85573866	+
GWHAAZE00000003	exon	85573965	85574074	+
GWHAAZE00000003	exon	85574840	85575059	+
GWHAAZE00000003	CDS	85568070	85568073	+
GWHAAZE00000003	CDS	85568568	85568723	+
GWHAAZE00000003	CDS	85571931	85572111	+
GWHAAZE00000003	CDS	85572388	85572593	+
GWHAAZE00000003	CDS	85573646	85573866	+
GWHAAZE00000003	CDS	85573965	85574074	+
GWHAAZE00000003	CDS	85574840	85575059	+

Transcript Sequence
>GWHTAAZE012463 ATGGGTTGTTTGGAATGGATTATGGAGAATCAAAGGGCAGATGGGTCTTGGGGATTAAATCCCACACATCCATCCCTCGTTAAAGATTCTCTCTCTTCCACACTTGCTTGTGTACTTGCCCTCCAAAAATGGAAAGTCGGCCAACAACTTGTTCAAAAAGGACTGGATTTTATTGGGTCAAAGAGATACGCTATCATGGACAAACACCAGTGTTCTCCAATTGGGTTCGATATTATATTCCCGGGCATGATTAGTTACGCAAACGAATTGGGTTTGAATTTGCCTCTTGACTCAGATTTTGTGAACGTAATGCTACGGAATCGAGACCTTCAACTTCAAAGTGTCAAGGGAAAGGAAGGTCATCTTGCGTACATTGCTGAAGGATTGGATAAATCATATGACTGGAAAGAAATGGTGAAGAATCAACAAAGAAGTAATGGTTCTCTTTTTAATTCACCAGCTACAACGGCAGCCGCTCTCACTCACCTTCAGAATGATAAATGTTTTGACTACTTGCAATCCCTCTTAAAAACTCATGGAAAAGCTGACGCATTGGTGGACTTCGTTGATCGGAAGCATTTCTTCGGTTCAGTAAGCCCACAATTTACGAACATAGGCACAATTGTCCAATTGTATAGAGCTTCACAAGTCACAATATTTCCAGATGAACCTATTCTTGACAAAATAAATGCCTGGACTAGCACTTTTTTGAAGCATCAATACTCAGCGAATCAAGATATTATTTATTATGAGAAATTACACAAAGAGGTGGAATATGCTCTGAAGTTTACCATCGATACTGTAGACCGACTTAAACATAGGAGAGGCATAGAGCTATATAGTCCCGAAGATTTTCAAATGCTCAAGACATCATACAGGTGGGTCAAAGAAAGCAGAATGATGACTCTGGATTTTGAATGGCATACATTGATTTCCTCTTATATGCAGCTTGCCTCCGTACACTTTGAGCCCGAATTATCTGATGCCCGGATTTCATGGACACAAAATTCTTTTGTTGGAACTATTATTGATGATATGTTTGACATTGATGGCACCAGGGAAGAATTAGTAAACCTTCTTGAATTGATGAAAAAGTAA

Network for GWHGAAZE012449

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0263	Transcription factor MYB family Transcription factor MYB Ubiquitin_SKP1 family Ubiquitin_SKP1 family

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03936.17	Terpene_synth_C	288	364	1.20E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04121	E4.2.3.19	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0010333	molecular_function	terpene synthase activity
GO:0016829	molecular_function	lyase activity
GO:0000287	molecular_function	magnesium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.145
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.538
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.093
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.415
	SRR8316900	Third green stage	1.629
	SRR8316901	Third green stage	0.838
	SRR8316898	Complete white stage	0.889
	SRR8316899	Complete white stage	6.864
	SRR8316903	Complete white stage	2.993
	SRR8316902	Silver flowering stage	0.033
	SRR8316904	Silver flowering stage	0.063
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.141
	SRR6706287	Light intensity 50%	0.221
	SRR6706288	Light intensity 20%	0.159
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.346
	CNS0095593	Slightly white alabastrum(diploid) 2	0.217
	CNS0095594	Slightly white alabastrum(diploid) 3	0.820
	CNS0095595	Whole white alabastrum(diploid) 2	0.290
	CNS0095596	Whole white alabastrum(diploid) 3	0.388
	CNS0095597	Whole white alabastrum(diploid) 4	0.288
	CNS0095598	Silvery flower (diploied) 1	0.510
	CNS0095599	Silvery flower (diploied) 2	0.127
	CNS0095600	Silvery flower (diploied) 3	1.152
	CNS0095601	Golden flower (diploid) 1	0.718
	CNS0095602	Golden flower (diploid) 2	0.602
	CNS0095603	Golden flower (diploid) 3	0.483
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.322
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.248
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.106
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.796
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.552
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.277
	CNS0095610	Silvery flower (diploied) 1	0.012
	CNS0095611	Silvery flower (diploied) 2	0.373
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.036
	CRR073299	Stem 3	0.022
	CRR073300	Leaf 1	0.405
	CRR073301	Leaf 2	0.107
	CRR073302	Leaf 3	0.145
	CRR073303	Juvenile bud 1	0.199
	CRR073304	Juvenile bud 2	0.008
	CRR073305	Juvenile bud 3	0.742
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000