Gene detail

Detail information of GWHGAAZE012543

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008243329.1	5.3683E-135	PREDICTED: probable ribose-5-phosphate isomerase 2 [Prunus mume]
Swissprot	tr\|Q9ZU38\|RPI2_ARATH	5E-121	Probable ribose-5-phosphate isomerase 2
trEMBL	tr\|A0A0A0KTB3\|A0A0A0KTB3_CUCSA	1E-131	Uncharacterized protein {ECO:0000313\|EMBL:KGN52139.1}
TAIR10	AT2G01290.1	2E-96	ribose-5-phosphate isomerase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	87567146	87567790	+
GWHAAZE00000003	mRNA	87567146	87567790	+
GWHAAZE00000003	exon	87567146	87567790	+
GWHAAZE00000003	CDS	87567146	87567790	+

Transcript Sequence
>GWHTAAZE012557 ATGGTCCTAGGGTTAGGAACCGGCTCAACGGCGTGTCACGCCGTTGACAGAATCGGAGAACTTCTCCGGCAAGGCCAACTCACCAACATAATAGGAATACCCACCTCAAAAAAGACTCAAGAACAAGCAATTTCAGTGGGAATCCCCTTGGCTGACCTAGATTCTCATCCCATCATTGACCTTGCAATCGACGGTGCGGATGAGGTCGACCCGTTCATGAATTTGGTAAAGGGTCGGGGCGGGTCATTGCTAAGGGAAAAAATGGTAGAGGGTGCTTGCAAGCAATTTGTGGTGATTGTAGATGAATCAAAATTGGTTAAGTATATAGGGGGTAGTGGGCTAGCTATGCCGGTTGAAATTGTGCCATTTTGTTGGAAGTTCACTGCCCAAAGGCTTGAACTGTTGTTTAAGGATGTGGGTTGTGTTGCAAAGCTTAGGACTTTTGGGGAAAATGGGAATCCATTTGTGACTGATAATGGGAATTATATAGTGGATTTGTATTTCAAGAAAGATATGGGGGATTTGAAGGCAGCTAGTGATGCGATTTTGCGATTGGCAGGTGTTGTTGAGCATGGAATGTTTCTTGATATGGCGACTACTTTGATTGTGGCCGGTGAGCTTGGTGTCACCGTGAAGAATAAGTAG

Network for GWHGAAZE012543

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06026.15	Rib_5-P_isom_A	32	206	4.20E-60

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01807	rpiA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Pentose phosphate pathway	map00030
		Carbon fixation in photosynthetic organisms	map00710

Gene Ontology

GO term	Ontology	Name
GO:0009052	biological_process	pentose-phosphate shunt, non-oxidative branch
GO:0004751	molecular_function	ribose-5-phosphate isomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.870
	SRR3591706	second leaf	39.478
	SRR3591707	mature leaf	32.079
	SRR3591708	Shoot apex	44.164
	SRR3591709	Stem	101.145
	SRR3591710	White floral bud	111.740
	SRR3591711	White flower	168.200
	SRR3591712	Green floral bud	46.681
	SRR3591713	Yellow flower	99.065
SRP173429	SRR8316895	Juvenile bud stage	38.449
	SRR8316896	Juvenile bud stage	19.877
	SRR8316897	Juvenile bud stage	26.118
	SRR8316894	Third green stage	18.718
	SRR8316900	Third green stage	59.951
	SRR8316901	Third green stage	58.887
	SRR8316898	Complete white stage	42.575
	SRR8316899	Complete white stage	78.334
	SRR8316903	Complete white stage	53.712
	SRR8316902	Silver flowering stage	53.408
	SRR8316904	Silver flowering stage	39.676
	SRR8316905	Silver flowering stage	19.388
	SRR8316906	Gold flowering stage	77.217
	SRR8316907	Gold flowering stage	100.583
	SRR8316908	Gold flowering stage	61.124
SRP132670	SRR6706286	Control	69.436
	SRR6706287	Light intensity 50%	74.475
	SRR6706288	Light intensity 20%	66.846
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	75.814
	CNS0095593	Slightly white alabastrum(diploid) 2	97.391
	CNS0095594	Slightly white alabastrum(diploid) 3	97.638
	CNS0095595	Whole white alabastrum(diploid) 2	70.522
	CNS0095596	Whole white alabastrum(diploid) 3	37.410
	CNS0095597	Whole white alabastrum(diploid) 4	50.745
	CNS0095598	Silvery flower (diploied) 1	163.740
	CNS0095599	Silvery flower (diploied) 2	115.700
	CNS0095600	Silvery flower (diploied) 3	95.928
	CNS0095601	Golden flower (diploid) 1	132.924
	CNS0095602	Golden flower (diploid) 2	107.090
	CNS0095603	Golden flower (diploid) 3	103.878
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.528
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.831
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.978
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.999
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.352
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.996
	CNS0095610	Silvery flower (diploied) 1	28.036
	CNS0095611	Silvery flower (diploied) 2	11.335
	CNS0095612	Silvery flower (diploied) 3	14.421
	CNS0095613	Golden flower (tetraploid) 1	34.030
	CNS0095614	Golden flower (tetraploid) 2	17.863
	CNS0095615	Golden flower (tetraploid) 3	18.817
CRA001975	CRR073297	Stem 1	24.298
	CRR073298	Stem 2	27.379
	CRR073299	Stem 3	30.194
	CRR073300	Leaf 1	39.074
	CRR073301	Leaf 2	62.742
	CRR073302	Leaf 3	55.843
	CRR073303	Juvenile bud 1	34.855
	CRR073304	Juvenile bud 2	48.928
	CRR073305	Juvenile bud 3	42.598
	CRR073306	Third green 1	96.985
	CRR073307	Third green 2	130.385
	CRR073308	Third green 3	100.545
	CRR073309	Second white 1	62.145
	CRR073310	Second white 2	37.314
	CRR073311	Second white 3	36.190
	CRR073312	Silver flowering 1	76.930
	CRR073313	Silver flowering 2	91.258
	CRR073314	Silver flowering 3	80.430
	CRR073315	Gold flowering 1	64.217
	CRR073316	Gold flowering 2	49.805
	CRR073317	Gold flowering 3	69.942
	CRR073318	Tawny withering 1	62.799
	CRR073319	Tawny withering 2	112.463
	CRR073320	Tawny withering 3	99.359