Detail information of GWHGAAZE012560


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP00702.14.3103E-130unnamed protein product [Coffea canephora]
trEMBLtr|A0A068TXG5|A0A068TXG5_COFCA2E-130Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313|EMBL:CDP00702.1}
TAIR10AT2G01130.13E-91DEA(D/H)-box RNA helicase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8775660987761064-
GWHAAZE00000003mRNA8775660987761064-
GWHAAZE00000003exon8776103587761064-
GWHAAZE00000003exon8776074687760898-
GWHAAZE00000003exon8776053387760643-
GWHAAZE00000003exon8775660987757127-
GWHAAZE00000003CDS8776103587761064-
GWHAAZE00000003CDS8776074687760898-
GWHAAZE00000003CDS8776053387760643-
GWHAAZE00000003CDS8775660987757127-
Transcript Sequence

Network for GWHGAAZE012560

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07717.17OB_NTP_bind3561.60E-10
PF00035.27dsrm1822446.00E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14442DHX36, RHAU RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.399
SRR3591706second leaf16.793
SRR3591707mature leaf25.575
SRR3591708Shoot apex28.148
SRR3591709Stem29.917
SRR3591710White floral bud19.500
SRR3591711White flower27.977
SRR3591712Green floral bud20.387
SRR3591713Yellow flower20.216
SRP173429 SRR8316895Juvenile bud stage 13.493
SRR8316896Juvenile bud stage 19.711
SRR8316897Juvenile bud stage 6.987
SRR8316894Third green stage 7.828
SRR8316900Third green stage 17.451
SRR8316901Third green stage 17.337
SRR8316898Complete white stage 5.597
SRR8316899Complete white stage 18.941
SRR8316903Complete white stage 11.107
SRR8316902Silver flowering stage9.821
SRR8316904Silver flowering stage15.476
SRR8316905Silver flowering stage6.916
SRR8316906Gold flowering stage 22.150
SRR8316907Gold flowering stage 20.175
SRR8316908Gold flowering stage 23.453
SRP132670SRR6706286Control16.448
SRR6706287Light intensity 50%16.147
SRR6706288Light intensity 20%17.282
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.070
CNS0095593Slightly white alabastrum(diploid) 217.774
CNS0095594Slightly white alabastrum(diploid) 315.462
CNS0095595Whole white alabastrum(diploid) 216.942
CNS0095596Whole white alabastrum(diploid) 317.633
CNS0095597Whole white alabastrum(diploid) 414.671
CNS0095598Silvery flower (diploied) 116.829
CNS0095599Silvery flower (diploied) 212.890
CNS0095600Silvery flower (diploied) 326.509
CNS0095601Golden flower (diploid) 118.480
CNS0095602Golden flower (diploid) 226.942
CNS0095603Golden flower (diploid) 327.808
CNS0095604Slightly white alabastrum(tetraploid) 121.784
CNS0095605Slightly white alabastrum(tetraploid) 222.246
CNS0095606Slightly white alabastrum(tetraploid) 323.342
CNS0095607Whole white alabastrum(tetraploid) 119.189
CNS0095608Whole white alabastrum(tetraploid) 213.972
CNS0095609Whole white alabastrum(tetraploid) 318.115
CNS0095610Silvery flower (diploied) 128.828
CNS0095611Silvery flower (diploied) 231.181
CNS0095612Silvery flower (diploied) 331.681
CNS0095613Golden flower (tetraploid) 118.939
CNS0095614Golden flower (tetraploid) 232.389
CNS0095615Golden flower (tetraploid) 334.704
CRA001975CRR073297Stem 119.994
CRR073298Stem 220.522
CRR073299Stem 314.900
CRR073300Leaf 115.431
CRR073301Leaf 219.559
CRR073302Leaf 310.916
CRR073303Juvenile bud 115.451
CRR073304Juvenile bud 28.826
CRR073305Juvenile bud 320.583
CRR073306Third green 19.258
CRR073307Third green 28.240
CRR073308Third green 38.498
CRR073309Second white 19.919
CRR073310Second white 212.723
CRR073311Second white 312.097
CRR073312Silver flowering 110.668
CRR073313Silver flowering 214.384
CRR073314Silver flowering 314.414
CRR073315Gold flowering 111.487
CRR073316Gold flowering 213.299
CRR073317Gold flowering 37.793
CRR073318Tawny withering 116.611
CRR073319Tawny withering 213.725
CRR073320Tawny withering 317.342