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Detail information of GWHGAAZE012560
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
CDP00702.1
4.3103E-130
unnamed protein product [Coffea canephora]
trEMBL
tr|A0A068TXG5|A0A068TXG5_COFCA
2E-130
Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313|EMBL:CDP00702.1}
TAIR10
AT2G01130.1
3E-91
DEA(D/H)-box RNA helicase family protein
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000003
gene
87756609
87761064
-
GWHAAZE00000003
mRNA
87756609
87761064
-
GWHAAZE00000003
exon
87761035
87761064
-
GWHAAZE00000003
exon
87760746
87760898
-
GWHAAZE00000003
exon
87760533
87760643
-
GWHAAZE00000003
exon
87756609
87757127
-
GWHAAZE00000003
CDS
87761035
87761064
-
GWHAAZE00000003
CDS
87760746
87760898
-
GWHAAZE00000003
CDS
87760533
87760643
-
GWHAAZE00000003
CDS
87756609
87757127
-
Transcript Sequence
>GWHTAAZE012574 ATGGAGGATGGTCAGGTGCTTCTGTATTCGAACTCAGTAAATGCACGTGACTCTAGAATTCCATATCCGTGGTTAGTCTTCAACGAGAAGATCAAAGTAAACTCTGTTTTCCTTCGAGATTCAACAGCTGTATCTGATTTGGTGCTTCTTCTATTTGGTGGAAGCATTTTGAGAGGGGATATTGATGGCCATCTAAAAATGTTGGGGGGATATTTGGAGTTCTTTATGATACCTGCTGCAGCACAAATGTTTATAAGCTTAAAGAGAGAGCTTGAGGAGTTAATTCAGAGCAAACATTCGAGCTATTCTGCTCTTGAATTAACTAGTACCGGTTATCTATGTTTGCAGTTACTCAATCCAAGGATGGATATACAAACCCATCACAGACTTTTATCTGCAATAAGGTTGCTGATCACAGAGGATCAATGTGGTGGCAGATTTGTTTTCAATCATCAGATAATGCGGCCCAGCAAACCATCAATTACGCCACCACCAGCTGCAGCAGTGGGTTCGAGGACAGAAAGTGGGCCCGGTGGTGATAATTCTAAGAGCCAGCTCCAAACACTGCTCACTCGGGCAGGGTATGCTGCACCCATCTACAAGACAAAGCAATTAAAGAACGGTCAGTTTAGAGCCACTGTTGAGTTCAACGGAATGCAGATCATGGGCCAGCCTTGCAACAACAAGAAACAAGCTGAAAAAGATGCTGCTGCCGAAGCTCTGGAATGGTTAACGGGAAGGACCCAAACAGGGCGTGACTATATTGAGCGCATGTCAATGATGCTAAAGAAGAGCAAGAAGGATCATTGCTGA
Network for GWHGAAZE012560
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF07717.17
OB_NTP_bind
3
56
1.60E-10
PF00035.27
dsrm
182
244
6.00E-11
Protein Sequence
>GWHPAAZE012567 MEDGQVLLYSNSVNARDSRIPYPWLVFNEKIKVNSVFLRDSTAVSDLVLLLFGGSILRGDIDGHLKMLGGYLEFFMIPAAAQMFISLKRELEELIQSKHSSYSALELTSTGYLCLQLLNPRMDIQTHHRLLSAIRLLITEDQCGGRFVFNHQIMRPSKPSITPPPAAAVGSRTESGPGGDNSKSQLQTLLTRAGYAAPIYKTKQLKNGQFRATVEFNGMQIMGQPCNNKKQAEKDAAAEALEWLTGRTQTGRDYIERMSMMLKKSKKDHC
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K14442
DHX36, RHAU
RNA degradation
map03018
Gene Ontology
GO term
Ontology
Name
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
20.399
SRR3591706
second leaf
16.793
SRR3591707
mature leaf
25.575
SRR3591708
Shoot apex
28.148
SRR3591709
Stem
29.917
SRR3591710
White floral bud
19.500
SRR3591711
White flower
27.977
SRR3591712
Green floral bud
20.387
SRR3591713
Yellow flower
20.216
SRP173429
SRR8316895
Juvenile bud stage
13.493
SRR8316896
Juvenile bud stage
19.711
SRR8316897
Juvenile bud stage
6.987
SRR8316894
Third green stage
7.828
SRR8316900
Third green stage
17.451
SRR8316901
Third green stage
17.337
SRR8316898
Complete white stage
5.597
SRR8316899
Complete white stage
18.941
SRR8316903
Complete white stage
11.107
SRR8316902
Silver flowering stage
9.821
SRR8316904
Silver flowering stage
15.476
SRR8316905
Silver flowering stage
6.916
SRR8316906
Gold flowering stage
22.150
SRR8316907
Gold flowering stage
20.175
SRR8316908
Gold flowering stage
23.453
SRP132670
SRR6706286
Control
16.448
SRR6706287
Light intensity 50%
16.147
SRR6706288
Light intensity 20%
17.282
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
17.070
CNS0095593
Slightly white alabastrum(diploid) 2
17.774
CNS0095594
Slightly white alabastrum(diploid) 3
15.462
CNS0095595
Whole white alabastrum(diploid) 2
16.942
CNS0095596
Whole white alabastrum(diploid) 3
17.633
CNS0095597
Whole white alabastrum(diploid) 4
14.671
CNS0095598
Silvery flower (diploied) 1
16.829
CNS0095599
Silvery flower (diploied) 2
12.890
CNS0095600
Silvery flower (diploied) 3
26.509
CNS0095601
Golden flower (diploid) 1
18.480
CNS0095602
Golden flower (diploid) 2
26.942
CNS0095603
Golden flower (diploid) 3
27.808
CNS0095604
Slightly white alabastrum(tetraploid) 1
21.784
CNS0095605
Slightly white alabastrum(tetraploid) 2
22.246
CNS0095606
Slightly white alabastrum(tetraploid) 3
23.342
CNS0095607
Whole white alabastrum(tetraploid) 1
19.189
CNS0095608
Whole white alabastrum(tetraploid) 2
13.972
CNS0095609
Whole white alabastrum(tetraploid) 3
18.115
CNS0095610
Silvery flower (diploied) 1
28.828
CNS0095611
Silvery flower (diploied) 2
31.181
CNS0095612
Silvery flower (diploied) 3
31.681
CNS0095613
Golden flower (tetraploid) 1
18.939
CNS0095614
Golden flower (tetraploid) 2
32.389
CNS0095615
Golden flower (tetraploid) 3
34.704
CRA001975
CRR073297
Stem 1
19.994
CRR073298
Stem 2
20.522
CRR073299
Stem 3
14.900
CRR073300
Leaf 1
15.431
CRR073301
Leaf 2
19.559
CRR073302
Leaf 3
10.916
CRR073303
Juvenile bud 1
15.451
CRR073304
Juvenile bud 2
8.826
CRR073305
Juvenile bud 3
20.583
CRR073306
Third green 1
9.258
CRR073307
Third green 2
8.240
CRR073308
Third green 3
8.498
CRR073309
Second white 1
9.919
CRR073310
Second white 2
12.723
CRR073311
Second white 3
12.097
CRR073312
Silver flowering 1
10.668
CRR073313
Silver flowering 2
14.384
CRR073314
Silver flowering 3
14.414
CRR073315
Gold flowering 1
11.487
CRR073316
Gold flowering 2
13.299
CRR073317
Gold flowering 3
7.793
CRR073318
Tawny withering 1
16.611
CRR073319
Tawny withering 2
13.725
CRR073320
Tawny withering 3
17.342