Gene detail

Detail information of GWHGAAZE012561

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002280133.1	0	PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Vitis vinifera]
Swissprot	tr\|O22899\|DHX15_ARATH	2E-50	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBL	tr\|D7T8X8\|D7T8X8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI26949.3}
TAIR10	AT1G48650.2	0	DEA(D/H)-box RNA helicase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	87761667	87779269	-
GWHAAZE00000003	mRNA	87761667	87779269	-
GWHAAZE00000003	exon	87779018	87779269	-
GWHAAZE00000003	exon	87778862	87778930	-
GWHAAZE00000003	exon	87777906	87778060	-
GWHAAZE00000003	exon	87777696	87777783	-
GWHAAZE00000003	exon	87776776	87777021	-
GWHAAZE00000003	exon	87774615	87774710	-
GWHAAZE00000003	exon	87773694	87773882	-
GWHAAZE00000003	exon	87773420	87773579	-
GWHAAZE00000003	exon	87773209	87773339	-
GWHAAZE00000003	exon	87772629	87772796	-
GWHAAZE00000003	exon	87772264	87772536	-
GWHAAZE00000003	exon	87763314	87763508	-
GWHAAZE00000003	exon	87762514	87762717	-
GWHAAZE00000003	exon	87762330	87762399	-
GWHAAZE00000003	exon	87762058	87762206	-
GWHAAZE00000003	exon	87761667	87761975	-
GWHAAZE00000003	CDS	87779018	87779269	-
GWHAAZE00000003	CDS	87778862	87778930	-
GWHAAZE00000003	CDS	87777906	87778060	-
GWHAAZE00000003	CDS	87777696	87777783	-
GWHAAZE00000003	CDS	87776776	87777021	-
GWHAAZE00000003	CDS	87774615	87774710	-
GWHAAZE00000003	CDS	87773694	87773882	-
GWHAAZE00000003	CDS	87773420	87773579	-
GWHAAZE00000003	CDS	87773209	87773339	-
GWHAAZE00000003	CDS	87772629	87772796	-
GWHAAZE00000003	CDS	87772264	87772536	-
GWHAAZE00000003	CDS	87763314	87763508	-
GWHAAZE00000003	CDS	87762514	87762717	-
GWHAAZE00000003	CDS	87762330	87762399	-
GWHAAZE00000003	CDS	87762058	87762206	-
GWHAAZE00000003	CDS	87761667	87761975	-

Transcript Sequence
>GWHTAAZE012575 ATGAACGCCCTCTCTCTGCAATTCATCTTCTACCCTTTCTACCCCAAAACCCTAAAAAATTACGGAAGACCTTCACCACCACCACTCTCGCTTACGACGATGAAGGACCGTCCACGTCCGTCGTCGTACGGCTCCGTCTACATCCCTCCCCACCAACGCCTCCGCTCCGTCATCACTTCCGCCGCTGCTGCACATGACAATATCTCTCCTGCTCCTGTAGACTCGAAATCGGCCAATAATCAGAACAGTTTCTACAATTCTGCCTATGACGAGGTCTCGGAGGAAGGCTCCGATCACGAAATTGAGCAGTCCAACTACTCGGGTGCTTCAACCTCTGATAACATTGATACATGGAAATGGAAGCTAACCACACTTCTCCGCAATAAGGATAAGCAAGAAATTGTGTCGAGGGAAAAAAAGGATAGACGAGATTATGAACAAATTGCTGCTTTGGCAAGCAGAATGGGTTTGCATAGCCATCTATATGTAAAAGTTGTTGTAGTCAGCAAGGCCCCATTGCCAAACTACCGATTCGATCTGGATGATAGACGTCCTCAGAGAGAGGTGATGTTGCCTCCTGGTTTGCAAACAAGAGTGGATGCTTACCTTGGAGAGTACCTCTCCCAGAAAACAAGGAGTGTGGAAGGTTTTCGAGGTAGTAGGTTCTCAAGGTCAAGCAGTAATGGTAGTATTGCTAACGATGAGGGGCTTTTTGAGCAACCAGAACCACTGCCACATAGTAAGGTTGCCATGGAGAAAATCCTTTTGCGAAGAAGTGTGCAACTGCGCAATGAGCAACAAGCTTGGCAGGAATCTCCAGAAGGCCTGAAGATGCTGGAATTTCGTAGAAGCCTCCCTGCCTATAAAGAGAAGGATGGAATATTAAATGCTATCTCACAGAATCAGGTGGTTATCATCTCAGGTGAAACTGGTTGCGGAAAGACCACACAGATTCCCCAATTCATTTTAGAATCTGAGATCAAGTCTGTTCGTGGGGCAATGTGCAGTATTATATGTACTCAGCCTAGACGTATATCTGCTATGTCCGTTTCGGAAAGAGTTGCTAATGAGAGAGGGGAAAAGCTGGGTGAAATGGTTGGGTACAAAGTCAGGCTAGAGGGTGTAAAAGGAAGGGATACCCGCCTCCTTTTCTGCACCACAGGCATATTGTTGAGAAGATTACTAGTAGATAGAAACTTGAAGGGTGTTACTCACGTGATTGTGGATGAGATTCATGAACGGGGGATGAATGAAGATTTTCTGCTTATTGTCCTAAAAGATGTACTTCCTCGTCGGCCAGAATTGAGGTTGATTTTGATGAGTGCAACCTTAGATGCAGAGCTTTTCTCATCCTACTTTGGTGGGGCTCCTTTGGTCCATATTCCGGGTTTTACTTATCCAGTACAAACTCATTTCCTGGAAAATACGCTGGAGATGATAGGATACAGATTGACAACATATAACCAAATCGATGACTTTGGGCAAGATAAGTCATGGAAAATGAATAAACAAGCTCCAAGAAAGAGGAAGAGCCAAATCGCTTCGGCTGTTGAGGATGCACTGAGAGCGGCTGATTTTAAGGAATATAGCCCACAGACACGGGACTCTTTGTCCTGCTGGAATCCTGATTGTATTGGTTTCAACCTCATAGAATCTCTTTTATGCTATATATGTGAAAAAGGAAGGCCTGGTGCTGTTTTGGTTTTTATGACTGGGTGGGATGACATAAATTCCCTGAAGGATAAGCTCCAATCTCATTCTATCCTTGGAGATCCAAGCCGAGTTTTGTTGCTGGCATGCCATGGTTCTATGGCCAGTTTGGAGCAGAGGTTAATATTTCACAAGCCTGAAGATGGAGTGCGGAAAATAGTTTTGGCAACTAATATTGCTGAAACCAGTATCACAATTGATGATGTGGTTTTTGTTATTGACTGTGGAAAAGCCAAAGAGTCATCGTATGATGCACTGAATAATACCCCTTGTTTGCTTCCTTCTTGGATCTCCAAGGTTTCTGCACAACAAAGAAGAGGAAGAGCTGGGCGTGTTCAGGCAGGGGAATGCTACCATCTCTATCCCAAATGCGTCTATGATGCTTTTGCGGATTATCAGTTGCCAGAAATTTTAAGGACGCCTCTGCAGTCCCTTTGTCTGCAAATCAAAAGCTTAAAACAAGGAAGTATTTCTGAGTTCTTATCAAGGGCTTTGCAGTCACCAGAGTTACTAGCGGTCCAAAATGCCGTCGAGTATCTTAAAATCATTGGTGCCTTAGATCAGGATGAAAATCTGACCATTTTGGGTCGCTACTTGACAATGCTTCCAATGGAGCCAAAACTCGGAAAGATGCTAATTCTAGGTGCTATTTTCAATTGTCTGGACCCAATATTAACTATTGTTGCTGGTCTTAGCGTCAGAGATCCTTTCTTAACACCATTGGACAAGAAGGATCTGGCAGAGGCTGCAAAGGCTCAGTATGCCGGTGATTATAGTGACCATCTTGCACTTGTAAGGGCATATGAGTGCTGGAAAGATGCTGAAAGAGATCTAGCTGGATATGAATACTGCTGGAAAAATTTTCTCTCTGCACAATCAATGAAAGCCATTGATTCTCTTAGAAAGGAGTTTTACTCTCTGCTCCAGGATACTGGCCTTGTTGATAGTAACACCACCACCCTAAATGCATCTAGCTCTGATGACAATCTCATTCGAGCTGTTATTTGCTATGGCTTGTATCCTGGAATGTTGCTTTATTTTTAA

Network for GWHGAAZE012561

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	295	445	5.40E-08
PF00271.32	Helicase_C	552	682	3.40E-14
PF04408.24	HA2	746	830	1.20E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14442	DHX36, RHAU	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding
GO:0004386	molecular_function	helicase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.393
	SRR3591706	second leaf	11.411
	SRR3591707	mature leaf	18.799
	SRR3591708	Shoot apex	16.060
	SRR3591709	Stem	19.108
	SRR3591710	White floral bud	16.501
	SRR3591711	White flower	19.161
	SRR3591712	Green floral bud	12.704
	SRR3591713	Yellow flower	16.855
SRP173429	SRR8316895	Juvenile bud stage	9.045
	SRR8316896	Juvenile bud stage	13.235
	SRR8316897	Juvenile bud stage	6.666
	SRR8316894	Third green stage	5.886
	SRR8316900	Third green stage	13.301
	SRR8316901	Third green stage	11.427
	SRR8316898	Complete white stage	4.804
	SRR8316899	Complete white stage	13.298
	SRR8316903	Complete white stage	11.572
	SRR8316902	Silver flowering stage	6.705
	SRR8316904	Silver flowering stage	13.261
	SRR8316905	Silver flowering stage	6.166
	SRR8316906	Gold flowering stage	17.376
	SRR8316907	Gold flowering stage	16.922
	SRR8316908	Gold flowering stage	19.786
SRP132670	SRR6706286	Control	13.010
	SRR6706287	Light intensity 50%	13.305
	SRR6706288	Light intensity 20%	13.027
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.675
	CNS0095593	Slightly white alabastrum(diploid) 2	4.829
	CNS0095594	Slightly white alabastrum(diploid) 3	5.016
	CNS0095595	Whole white alabastrum(diploid) 2	7.249
	CNS0095596	Whole white alabastrum(diploid) 3	5.721
	CNS0095597	Whole white alabastrum(diploid) 4	8.233
	CNS0095598	Silvery flower (diploied) 1	10.172
	CNS0095599	Silvery flower (diploied) 2	8.837
	CNS0095600	Silvery flower (diploied) 3	23.576
	CNS0095601	Golden flower (diploid) 1	8.585
	CNS0095602	Golden flower (diploid) 2	27.251
	CNS0095603	Golden flower (diploid) 3	24.665
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.371
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.553
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.992
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.982
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.352
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.652
	CNS0095610	Silvery flower (diploied) 1	24.499
	CNS0095611	Silvery flower (diploied) 2	32.558
	CNS0095612	Silvery flower (diploied) 3	25.206
	CNS0095613	Golden flower (tetraploid) 1	8.379
	CNS0095614	Golden flower (tetraploid) 2	20.972
	CNS0095615	Golden flower (tetraploid) 3	31.418
CRA001975	CRR073297	Stem 1	15.335
	CRR073298	Stem 2	13.962
	CRR073299	Stem 3	10.698
	CRR073300	Leaf 1	14.911
	CRR073301	Leaf 2	10.747
	CRR073302	Leaf 3	8.499
	CRR073303	Juvenile bud 1	10.219
	CRR073304	Juvenile bud 2	7.457
	CRR073305	Juvenile bud 3	15.662
	CRR073306	Third green 1	7.121
	CRR073307	Third green 2	5.486
	CRR073308	Third green 3	7.326
	CRR073309	Second white 1	8.421
	CRR073310	Second white 2	8.548
	CRR073311	Second white 3	11.684
	CRR073312	Silver flowering 1	8.999
	CRR073313	Silver flowering 2	10.092
	CRR073314	Silver flowering 3	10.121
	CRR073315	Gold flowering 1	5.827
	CRR073316	Gold flowering 2	9.862
	CRR073317	Gold flowering 3	6.044
	CRR073318	Tawny withering 1	6.756
	CRR073319	Tawny withering 2	5.729
	CRR073320	Tawny withering 3	6.048