Gene detail

Detail information of GWHGAAZE012605

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP39550.1	5.32846E-77	hypothetical protein JCGZ_02570 [Jatropha curcas]
Swissprot	tr\|Q6E7H0\|ORC3_ARATH	8E-57	Origin of replication complex subunit 3 {ECO:0000303\|PubMed:16179646}
trEMBL	tr\|A0A067L4W6\|A0A067L4W6_JATCU	2E-77	Uncharacterized protein {ECO:0000313\|EMBL:KDP39550.1}
TAIR10	AT5G16690.1	2E-50	origin recognition complex subunit 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	88400462	88405221	-
GWHAAZE00000003	mRNA	88400462	88405221	-
GWHAAZE00000003	exon	88400462	88400531	-
GWHAAZE00000003	exon	88402274	88402504	-
GWHAAZE00000003	exon	88404041	88404172	-
GWHAAZE00000003	exon	88404281	88404357	-
GWHAAZE00000003	exon	88404770	88404847	-
GWHAAZE00000003	exon	88404982	88405221	-
GWHAAZE00000003	CDS	88404982	88405221	-
GWHAAZE00000003	CDS	88404770	88404847	-
GWHAAZE00000003	CDS	88404281	88404357	-
GWHAAZE00000003	CDS	88404041	88404172	-
GWHAAZE00000003	CDS	88402274	88402504	-
GWHAAZE00000003	CDS	88400462	88400531	-

Transcript Sequence
>GWHTAAZE012619 ATGGGAGTTTCAACAACCACTGATGCCCCAAGAAACACACTTTCTTCAAATGCTCTCCAATACCTATCATCTACTAAGTTCATTTTGAGATCTCCATCTGAGAGATTGGATGCAATCATTGAGGCAGTTCTTGTGAAACAATGTTCTGGCTTCTGTCTTGGTCACAAGGTTGCTCTTTTCTTGAGAAACTGCTTCTTGAGACAGGATGGAACACTGACCTCATTTATTAGAGCATTGAAGATGGCCATTGTCCAACACTTATCCACAGAGCCTTTAAGCTTCATACTCAAAGGGTTTGTTAATGAAGAAGAACATCAGGTGTCAGATACTGGGAAGCATGTGTCAATGTCTGAAATGATGCTCAAAAGAGCTTTTGATCTTCCATCTTACAAGAGGTATAAACTTGCCGAGCCAAATGGTGATACTTGGGTCAACGGTTTGTCAGAAATGAAAAAATTGCAGAAATTGTGGAGCTCTCTGGTTTTGGTGAGACCTCAAATCACTTCATTTTCTTCACTTGTCTTTAGATTGCCTCTTTTTTGGCAGAGTTTGTATGAAGCTGGAAAGCGTCATAACATCACCCTGTTAGACTTATACTGCGAGGCACTTCGTCCAGAGCTATATGACTCCAGGGGTTCTGATCATCACTTAGGATTAGAAAAACATTTTAGAGTGCCTTCAAGTGATCAATCTGTGCATGGACAACGTTCTAGCTTGCACAAGGGTGGTGTCATTCATCAGGCAATTTCCAAGGTAAGGGATATACCGGCATCAGCATTGGGACAGTTGTTTGAGACCTGGGAAAAACTTACGGAGGATGTCAATGAG

Network for GWHGAAZE012605

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07034.12	ORC3_N	1	94	1.40E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02605	ORC3	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0005664	cellular_component	nuclear origin of replication recognition complex
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.073
	SRR3591706	second leaf	0.914
	SRR3591707	mature leaf	0.119
	SRR3591708	Shoot apex	7.055
	SRR3591709	Stem	0.753
	SRR3591710	White floral bud	0.652
	SRR3591711	White flower	0.457
	SRR3591712	Green floral bud	0.676
	SRR3591713	Yellow flower	0.326
SRP173429	SRR8316895	Juvenile bud stage	1.458
	SRR8316896	Juvenile bud stage	1.278
	SRR8316897	Juvenile bud stage	0.991
	SRR8316894	Third green stage	0.627
	SRR8316900	Third green stage	1.321
	SRR8316901	Third green stage	0.663
	SRR8316898	Complete white stage	0.096
	SRR8316899	Complete white stage	0.917
	SRR8316903	Complete white stage	0.148
	SRR8316902	Silver flowering stage	0.087
	SRR8316904	Silver flowering stage	0.005
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.321
	SRR6706287	Light intensity 50%	0.331
	SRR6706288	Light intensity 20%	0.421
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.921
	CNS0095593	Slightly white alabastrum(diploid) 2	0.356
	CNS0095594	Slightly white alabastrum(diploid) 3	0.752
	CNS0095595	Whole white alabastrum(diploid) 2	0.718
	CNS0095596	Whole white alabastrum(diploid) 3	0.393
	CNS0095597	Whole white alabastrum(diploid) 4	0.735
	CNS0095598	Silvery flower (diploied) 1	0.564
	CNS0095599	Silvery flower (diploied) 2	0.865
	CNS0095600	Silvery flower (diploied) 3	0.085
	CNS0095601	Golden flower (diploid) 1	0.882
	CNS0095602	Golden flower (diploid) 2	0.051
	CNS0095603	Golden flower (diploid) 3	0.229
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.994
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.545
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.473
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.402
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.118
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.515
	CNS0095610	Silvery flower (diploied) 1	0.323
	CNS0095611	Silvery flower (diploied) 2	0.162
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.068
	CRR073298	Stem 2	1.306
	CRR073299	Stem 3	1.277
	CRR073300	Leaf 1	0.409
	CRR073301	Leaf 2	0.429
	CRR073302	Leaf 3	0.412
	CRR073303	Juvenile bud 1	0.100
	CRR073304	Juvenile bud 2	0.118
	CRR073305	Juvenile bud 3	0.125
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.063
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.004
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.575
	CRR073317	Gold flowering 3	0.129
	CRR073318	Tawny withering 1	1.058
	CRR073319	Tawny withering 2	0.149
	CRR073320	Tawny withering 3	2.615