Gene detail

Detail information of GWHGAAZE012724

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011075989.1	0	PREDICTED: E3 ubiquitin-protein ligase SINAT5 [Sesamum indicum]
Swissprot	tr\|Q8S3N1\|SINA5_ARATH	5E-176	E3 ubiquitin-protein ligase SINAT5
trEMBL	tr\|A0A068U9T5\|A0A068U9T5_COFCA	0	E3 ubiquitin-protein ligase {ECO:0000256\|RuleBase:RU201113}
TAIR10	AT4G27880.1	7E-139	Protein with RING/U-box and TRAF-like domains

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	90427604	90433126	+
GWHAAZE00000003	mRNA	90427604	90433126	+
GWHAAZE00000003	exon	90427604	90427624	+
GWHAAZE00000003	exon	90430425	90430811	+
GWHAAZE00000003	exon	90432761	90433126	+
GWHAAZE00000003	CDS	90427604	90427624	+
GWHAAZE00000003	CDS	90430425	90430811	+
GWHAAZE00000003	CDS	90432761	90433126	+

Transcript Sequence
>GWHTAAZE012738 ATGTACCCACCTATTCATCAGTGTCACAATGGCCACACATTATGTTCTACGTGTAAAACTAGGGTGCATAATCGATGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGATGCTTAGCCCTAGAGAAGGTAGCGGAATCACTTGAATTGCCCTGCAAGTATTATTCGTTTGGGTGCCCCGAGATATTCCCGTATTATAGCAAACTCAAGCATGAGGGTCTGTGCAACTTTAGACCCTACAATTGCCCCTATGCCGGGTCAGAGTGTGCAGTTACAGGTGATATTCCTTATTTGGTTTCTCATCTTAGGGACGACCACAAGGTGGACATGCACACGGGATGTACATTCAACCATCGATATGTCAAGTCCAATCCTCGTGAAGTCGAAAACGCCACCTGGATGCTAACTGTCTTTCATTGCTTTGGCCAATATTTTTGCCTCCACTTCGAGGCCTTCCAGCTTGGAACAGCCCCCGTGTACATGGCGTTTCTCCGGTTCATGGGTGATGACGCCGAGGCCCGTAATTACAGCTACAGCTTAGAGGTAGGAGGGAACGGAAGGAAGATGGGGTGGGAGGGTACCCCACGGAGCATAAGGGATAGTCACCGAAAAGTCAGGGACAGCCACGATGGGCTTATAATACAGAGGAATATGGCACTTTTCTTTTCGGGCGGGGACAAGAAAGAGTTGAAACTTAGGGTTACCGGAAGAATATGGAAGGAACAATCCAACCCAGATGTCGGAGTTTGCATACCCAGCCTCAATAATAATTGA

Network for GWHGAAZE012724

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03145.17	Sina	36	235	1.50E-80

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04506	SIAH1	Ubiquitin mediated proteolysis	map04120
		MAPK signaling pathway - fly	map04013
		Wnt signaling pathway	map04310
		p53 signaling pathway	map04115

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0007275	biological_process	multicellular organism development
GO:0005634	cellular_component	nucleus
GO:0008270	molecular_function	zinc ion binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.341
	SRR3591706	second leaf	21.587
	SRR3591707	mature leaf	24.157
	SRR3591708	Shoot apex	27.985
	SRR3591709	Stem	42.073
	SRR3591710	White floral bud	82.150
	SRR3591711	White flower	43.855
	SRR3591712	Green floral bud	62.746
	SRR3591713	Yellow flower	47.059
SRP173429	SRR8316895	Juvenile bud stage	21.255
	SRR8316896	Juvenile bud stage	31.138
	SRR8316897	Juvenile bud stage	14.112
	SRR8316894	Third green stage	13.922
	SRR8316900	Third green stage	44.531
	SRR8316901	Third green stage	48.385
	SRR8316898	Complete white stage	23.157
	SRR8316899	Complete white stage	65.333
	SRR8316903	Complete white stage	36.371
	SRR8316902	Silver flowering stage	23.917
	SRR8316904	Silver flowering stage	26.745
	SRR8316905	Silver flowering stage	14.327
	SRR8316906	Gold flowering stage	45.182
	SRR8316907	Gold flowering stage	38.454
	SRR8316908	Gold flowering stage	44.688
SRP132670	SRR6706286	Control	37.855
	SRR6706287	Light intensity 50%	37.787
	SRR6706288	Light intensity 20%	37.090
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	41.921
	CNS0095593	Slightly white alabastrum(diploid) 2	37.824
	CNS0095594	Slightly white alabastrum(diploid) 3	35.145
	CNS0095595	Whole white alabastrum(diploid) 2	42.898
	CNS0095596	Whole white alabastrum(diploid) 3	52.798
	CNS0095597	Whole white alabastrum(diploid) 4	57.201
	CNS0095598	Silvery flower (diploied) 1	29.080
	CNS0095599	Silvery flower (diploied) 2	28.565
	CNS0095600	Silvery flower (diploied) 3	54.487
	CNS0095601	Golden flower (diploid) 1	29.313
	CNS0095602	Golden flower (diploid) 2	54.318
	CNS0095603	Golden flower (diploid) 3	48.300
	CNS0095604	Slightly white alabastrum(tetraploid) 1	48.659
	CNS0095605	Slightly white alabastrum(tetraploid) 2	51.342
	CNS0095606	Slightly white alabastrum(tetraploid) 3	61.843
	CNS0095607	Whole white alabastrum(tetraploid) 1	60.138
	CNS0095608	Whole white alabastrum(tetraploid) 2	69.400
	CNS0095609	Whole white alabastrum(tetraploid) 3	57.639
	CNS0095610	Silvery flower (diploied) 1	48.363
	CNS0095611	Silvery flower (diploied) 2	44.742
	CNS0095612	Silvery flower (diploied) 3	46.058
	CNS0095613	Golden flower (tetraploid) 1	43.580
	CNS0095614	Golden flower (tetraploid) 2	57.831
	CNS0095615	Golden flower (tetraploid) 3	72.680
CRA001975	CRR073297	Stem 1	35.498
	CRR073298	Stem 2	32.715
	CRR073299	Stem 3	34.263
	CRR073300	Leaf 1	39.860
	CRR073301	Leaf 2	33.926
	CRR073302	Leaf 3	32.340
	CRR073303	Juvenile bud 1	36.963
	CRR073304	Juvenile bud 2	42.019
	CRR073305	Juvenile bud 3	40.350
	CRR073306	Third green 1	40.879
	CRR073307	Third green 2	43.074
	CRR073308	Third green 3	39.098
	CRR073309	Second white 1	33.338
	CRR073310	Second white 2	32.836
	CRR073311	Second white 3	23.497
	CRR073312	Silver flowering 1	30.522
	CRR073313	Silver flowering 2	37.781
	CRR073314	Silver flowering 3	30.386
	CRR073315	Gold flowering 1	14.829
	CRR073316	Gold flowering 2	11.119
	CRR073317	Gold flowering 3	14.030
	CRR073318	Tawny withering 1	34.125
	CRR073319	Tawny withering 2	33.521
	CRR073320	Tawny withering 3	36.035