Gene detail

Detail information of GWHGAAZE012813

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002316470.1	NtN2 family protein [Populus trichocarpa]
Swissprot	tr\|Q9FPT1\|UBP12_ARATH	Ubiquitin carboxyl-terminal hydrolase 12
trEMBL	tr\|B9HVH8\|B9HVH8_POPTR	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}
TAIR10	AT5G06600.2	ubiquitin-specific protease 12

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	91891058	91914541	-
GWHAAZE00000003	mRNA	91891058	91914541	-
GWHAAZE00000003	exon	91914539	91914541	-
GWHAAZE00000003	exon	91911384	91911450	-
GWHAAZE00000003	exon	91911044	91911191	-
GWHAAZE00000003	exon	91910774	91910931	-
GWHAAZE00000003	exon	91908326	91908591	-
GWHAAZE00000003	exon	91908034	91908252	-
GWHAAZE00000003	exon	91907848	91907956	-
GWHAAZE00000003	exon	91907654	91907769	-
GWHAAZE00000003	exon	91906058	91906156	-
GWHAAZE00000003	exon	91905277	91905356	-
GWHAAZE00000003	exon	91903843	91903917	-
GWHAAZE00000003	exon	91901785	91901863	-
GWHAAZE00000003	exon	91901542	91901688	-
GWHAAZE00000003	exon	91901370	91901450	-
GWHAAZE00000003	exon	91901144	91901263	-
GWHAAZE00000003	exon	91900222	91900344	-
GWHAAZE00000003	exon	91897259	91897336	-
GWHAAZE00000003	exon	91897038	91897126	-
GWHAAZE00000003	exon	91896236	91896521	-
GWHAAZE00000003	exon	91895937	91896047	-
GWHAAZE00000003	exon	91894515	91894570	-
GWHAAZE00000003	exon	91894226	91894403	-
GWHAAZE00000003	exon	91893831	91893902	-
GWHAAZE00000003	exon	91893597	91893662	-
GWHAAZE00000003	exon	91893071	91893136	-
GWHAAZE00000003	exon	91892532	91892618	-
GWHAAZE00000003	exon	91892262	91892378	-
GWHAAZE00000003	exon	91892063	91892137	-
GWHAAZE00000003	exon	91891853	91891920	-
GWHAAZE00000003	exon	91891058	91891202	-
GWHAAZE00000003	CDS	91914539	91914541	-
GWHAAZE00000003	CDS	91911384	91911450	-
GWHAAZE00000003	CDS	91911044	91911191	-
GWHAAZE00000003	CDS	91910774	91910931	-
GWHAAZE00000003	CDS	91908326	91908591	-
GWHAAZE00000003	CDS	91908034	91908252	-
GWHAAZE00000003	CDS	91907848	91907956	-
GWHAAZE00000003	CDS	91907654	91907769	-
GWHAAZE00000003	CDS	91906058	91906156	-
GWHAAZE00000003	CDS	91905277	91905356	-
GWHAAZE00000003	CDS	91903843	91903917	-
GWHAAZE00000003	CDS	91901785	91901863	-
GWHAAZE00000003	CDS	91901542	91901688	-
GWHAAZE00000003	CDS	91901370	91901450	-
GWHAAZE00000003	CDS	91901144	91901263	-
GWHAAZE00000003	CDS	91900222	91900344	-
GWHAAZE00000003	CDS	91897259	91897336	-
GWHAAZE00000003	CDS	91897038	91897126	-
GWHAAZE00000003	CDS	91896236	91896521	-
GWHAAZE00000003	CDS	91895937	91896047	-
GWHAAZE00000003	CDS	91894515	91894570	-
GWHAAZE00000003	CDS	91894226	91894403	-
GWHAAZE00000003	CDS	91893831	91893902	-
GWHAAZE00000003	CDS	91893597	91893662	-
GWHAAZE00000003	CDS	91893071	91893136	-
GWHAAZE00000003	CDS	91892532	91892618	-
GWHAAZE00000003	CDS	91892262	91892378	-
GWHAAZE00000003	CDS	91892063	91892137	-
GWHAAZE00000003	CDS	91891853	91891920	-
GWHAAZE00000003	CDS	91891058	91891202	-

Transcript Sequence
>GWHTAAZE012827 ATGCCAGAGGAGGATGAGATGCTAGTACCGCATTCAGATTTCGCGACAGAGGGTCCTCAGCCAATGGAAGTTGCACCAGCTGAAACTCCTAGTACTGTAGAAGCTCAGGCAGTTGATGATCCACCGTCAGCGCGGTTCACATGGACAATTGAGAACTTTTCGAGGCTGAACACTAAGAAGCTGTATTCTGAAGTTTTTTATGTTGGTGGATTCAAATGGCGAGTGCTTATATTTCCCAAGGGGAACAATGTGGACCATTTGTCAATGTATCTAGATGTTGCTGATTCATCAACTTTGCCTTATGGTTGGAGCAGATACGCTCAATTCAGCTTAGCTGTGGTTAATCAAATCCATAACAAGTTTGTAGTGAGGAAAGAGACGCAACACCAGTTCAATGCACGAGAAAGCGATTGGGGATTCACATCATTCATGCCTCTTAGTGAACTGTATGACCCCGGTAGAGGCTATCTCGTGAATGATACATGCATAGTTGAAGCTGACGTTGCTGTCCGCAAAGTTGTAGATTACTGGTCACATGACTCGAAAAAGGAGACTGGATATGTGGGACTTAAGAATCAAGGAGCTACTTGTTATATGAACTCTCTCCTCCAGACTCTGTACCATATTCCTTATTTTAGAAAGGCTGTGTATCATATGCCGACAACCGAGAATGATATGCCTTCTGGAAGCATTCCTCTGGCTTTACAGAGTTTATTCTATAAGCTTCAGTACAGTGACACTAGTGTAGCAACGAAAGAGTTGACAAAGTCTTTTGGATGGGACACCTATGATTCTTTCATGCAACATGATGTGCAAGAACTCAATAGAGTTCTTTGTGAAAAGCTTGAAGACAAAATGAAGGGAACTGTCGTGGAGGGTACTATACAGCAGTTATTTGAAGGGCATCATATGAACTATATTGAATGTATCAATGTAGACTACAAGTCGACAAGAAAAGAGTCATTTTATGATCTTCAGCTTGATGTCAAAGGTTGTCGTGATGTTTACGCTTCATTTGACAAGTACGTTGAGGTGGAACGTCTTGAGGGTGATAATAGGTATCATGCCGAACAACATGGCTTGCAGGATGCTAGGAAGGGTGTCCTGTTCATTGACTTCCCCCCTGTTCTTCAGCTTCAGTTAAAACGATTTGAATATGATTTTATGCGGGATACTATGGTAAAGGAATCATTCTTAGGTCACAGCGAGTCCATACCTTGGTCTCACACCAATTCTTGTTCACATACCCATCGTCATGATGCCTTTGTTTTGGTACACAGTGGTGGAGTGCACGGGGGACATTATTATGCGTATATCCGGCCAGTTCTCTCTGATCAATGGTTCAAATTTGATGATGAACGTGTAACAAAAGAAGACATGAAGAGAGCGTTGGAGGAGCAGTATGGTGGAGAGGAGGAGTTACCGCAGACAAATCCTGGGTTCAACAACTCTCCATTTAAATTTACCAAATATTCAAATGCATATATGCTTGTGTATATTCGTGAAAGTGACAAGGAGAAAATAATATGTAATGTGGATGAAAAGGACATAGCTGAACACTTAAGGGTAAGATTGAAGAAAGAACAAGAAGAGAAGGAACAAAAGAGAAAGGAAAAGGCAGAGGCACACCTTTATACTATCATAAAGGTTGCTCGTGATGAGGACCTTCTTGAACAGATCGGAAGGGATATTTACTTTGATCTTGTTGACCACGATAAAGTTCGTAGTTTTCGCATTCAGAAACAAATGTCCTTCAACCTTTTCAAGGAGGAAGTTGCTAAAGAGCTGGGTATCCCAGTGCAATTTCAACGTTTTTGGCTGTGGGCAAAGCGCCAAAACCACACATATCGTCCAAATCGGCCATTGACGCCTCAGGAGGAAGCCCAATCTGTTGGACAATTGAGGGAAGTGTCAAACAAGGCCAATAATGCGGAGCTAAAGTTGTTCTTGGAAGTAGAACTTGGGCTGGACCTGCGTCCGGTTCCACCACCAGAGAAGAGTAAAGAAGACATTCTTCTCTTCTTCAAACTATATGATCCTTCGAAAGAGGAGCTTCGGTATGTTGGGCGGCTATTTGTGAAAGGCAGTGCCAAGCCTGCGGAAATACTAACAAAACTAAATGAATTGGTTGGCTTTGCTCCTGATGAAGAAATTGAACTCTTCGAGGTCTTTTCTTCTCATTATCTTGTTAATAATTTTGAGCTTTCCAAGCTGTTCGCTTATGTTGCGATTTTTGCTAGGCTTCTTATCTCACTGCGTCCTTCTGTTATCCAGGAAATAAAATTTGAACCAAGTGTCATGTGTGAACATATTGATAAAAAGCTCACTTTTCGTGGTAGTCAGCTTGAAGACGGGGACATCATTTGCTTTCAAAAACCTGTTCAAGTTGAAAGCAGTGAGCAATACCGCTATCCTGATGTTCCTTCTTTTCTGGAATATGTGCATAATCGCCAGGTTGTTCGCTTTCGTTCCCTAGAGAAACCGAAGGAGGATGAATTCTGTCTTGAGTTATCGAAGCTTCACAATTATGATGATGTTGTGGAAAGAGTAGCCCGCCATCTTAACTTGAATGATCCGTCTAAAATCAGACTTACACCTCATAATTGCTACTCCCAGCAACCTAAACCTACGCCTATTAAGTACCGAGGAGCAGAACATCTCTCAGACATGCTGGTTCACTACAATCAGGTTGTAATTCATACTATTAGATTGCCAAAACAAAGTACTGTTGGGGACGTTATTAGCGATCTTAAGACAAAGGTTGAGTTATCTAATCCAAGTGCAGAACTCCGATTGCTTGAGGTGTTTTATCACAAGATCTATAAGATTTTCCCACTTAATGAAAAGATCGAAAACATTAACGATCAATACTGGACGCTACGTGCAGAGGAGATTCCAGAAGAGGAGAAAAACCTTGGTCCTCATGATCGCTTGATTCATGTTTATCATTTTATGAAAGACACCGCTCAGAATCAGGTGCAGGTCCAGAATTTTGGTGAGCCGTTTTTCCTTGTCATCCATGAAAGCGAGACATTGGCTGATGTCAAGTTACGCATACAGAAAAAATTGCAGGTTCCTGATGAGGAGTTTTCGAAGTGGAAGTTTGCGTTTTTGGCTTTGGGTCGTCCCGAGTACCTTCAGGACACAGATATTGTGTCTACTCGATTTCAGAGAAGAGATGTTTATGGTGCTTGGGAACAGTACCTTGGATTGGAGCACTCTGATAATACTCCTAAAAGAATCGACACACGTTCGAGAAGCCAGTTAGAATCTACAATTAGGACTGATGCATTTGTCAAAATGATAGTCCTTGGATGGCATGTTTGGCGTTGTGGAAACAACACAGTGGGAGTAATATTTAAGCCAAGAACCGAGAATATGTGA

Network for GWHGAAZE012813

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00917.27	MATH	50	169	8.30E-20
PF00443.30	UCH	188	499	3.70E-35
PF12436.9	USP7_ICP0_bdg	603	733	7.80E-32
PF12436.9	USP7_ICP0_bdg	734	891	5.50E-39
PF14533.7	USP7_C2	894	1078	9.50E-46

Protein Sequence

>GWHPAAZE012820
MPEEDEMLVPHSDFATEGPQPMEVAPAETPSTVEAQAVDDPPSARFTWTIENFSRLNTKKLYSEVFYVGGFKWRVLIFPKGNNVDHLSMYLDVADSSTLPYGWSRYAQFSLAVVNQIHNKFVVRKETQHQFNARESDWGFTSFMPLSELYDPGRGYLVNDTCIVEADVAVRKVVDYWSHDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNRYHAEQHGLQDARKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKESFLGHSESIPWSHTNSCSHTHRHDAFVLVHSGGVHGGHYYAYIRPVLSDQWFKFDDERVTKEDMKRALEEQYGGEEELPQTNPGFNNSPFKFTKYSNAYMLVYIRESDKEKIICNVDEKDIAEHLRVRLKKEQEEKEQKRKEKAEAHLYTIIKVARDEDLLEQIGRDIYFDLVDHDKVRSFRIQKQMSFNLFKEEVAKELGIPVQFQRFWLWAKRQNHTYRPNRPLTPQEEAQSVGQLREVSNKANNAELKLFLEVELGLDLRPVPPPEKSKEDILLFFKLYDPSKEELRYVGRLFVKGSAKPAEILTKLNELVGFAPDEEIELFEVFSSHYLVNNFELSKLFAYVAIFARLLISLRPSVIQEIKFEPSVMCEHIDKKLTFRGSQLEDGDIICFQKPVQVESSEQYRYPDVPSFLEYVHNRQVVRFRSLEKPKEDEFCLELSKLHNYDDVVERVARHLNLNDPSKIRLTPHNCYSQQPKPTPIKYRGAEHLSDMLVHYNQVVIHTIRLPKQSTVGDVISDLKTKVELSNPSAELRLLEVFYHKIYKIFPLNEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFMKDTAQNQVQVQNFGEPFFLVIHESETLADVKLRIQKKLQVPDEEFSKWKFAFLALGRPEYLQDTDIVSTRFQRRDVYGAWEQYLGLEHSDNTPKRIDTRSRSQLESTIRTDAFVKMIVLGWHVWRCGNNTVGVIFKPRTENM

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
K11838	USP7, UBP15	FoxO signaling pathway	map04068

Gene Ontology

GO term	Ontology	Name
GO:0016579	biological_process	protein deubiquitination
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0005515	molecular_function	protein binding
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	63.290
	SRR3591706	second leaf	35.595
	SRR3591707	mature leaf	35.952
	SRR3591708	Shoot apex	38.333
	SRR3591709	Stem	50.867
	SRR3591710	White floral bud	54.741
	SRR3591711	White flower	60.704
	SRR3591712	Green floral bud	51.049
	SRR3591713	Yellow flower	57.638
SRP173429	SRR8316895	Juvenile bud stage	26.910
	SRR8316896	Juvenile bud stage	38.594
	SRR8316897	Juvenile bud stage	18.751
	SRR8316894	Third green stage	21.288
	SRR8316900	Third green stage	52.041
	SRR8316901	Third green stage	47.152
	SRR8316898	Complete white stage	23.001
	SRR8316899	Complete white stage	59.189
	SRR8316903	Complete white stage	47.106
	SRR8316902	Silver flowering stage	29.284
	SRR8316904	Silver flowering stage	47.591
	SRR8316905	Silver flowering stage	20.765
	SRR8316906	Gold flowering stage	59.503
	SRR8316907	Gold flowering stage	57.418
	SRR8316908	Gold flowering stage	57.933
SRP132670	SRR6706286	Control	34.691
	SRR6706287	Light intensity 50%	35.948
	SRR6706288	Light intensity 20%	39.621
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.660
	CNS0095593	Slightly white alabastrum(diploid) 2	20.228
	CNS0095594	Slightly white alabastrum(diploid) 3	18.727
	CNS0095595	Whole white alabastrum(diploid) 2	18.398
	CNS0095596	Whole white alabastrum(diploid) 3	18.272
	CNS0095597	Whole white alabastrum(diploid) 4	18.126
	CNS0095598	Silvery flower (diploied) 1	24.833
	CNS0095599	Silvery flower (diploied) 2	24.417
	CNS0095600	Silvery flower (diploied) 3	56.003
	CNS0095601	Golden flower (diploid) 1	21.027
	CNS0095602	Golden flower (diploid) 2	50.379
	CNS0095603	Golden flower (diploid) 3	48.174
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.603
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.573
	CNS0095606	Slightly white alabastrum(tetraploid) 3	52.076
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.515
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.092
	CNS0095609	Whole white alabastrum(tetraploid) 3	42.034
	CNS0095610	Silvery flower (diploied) 1	57.511
	CNS0095611	Silvery flower (diploied) 2	51.613
	CNS0095612	Silvery flower (diploied) 3	43.374
	CNS0095613	Golden flower (tetraploid) 1	25.229
	CNS0095614	Golden flower (tetraploid) 2	47.942
	CNS0095615	Golden flower (tetraploid) 3	54.154
CRA001975	CRR073297	Stem 1	39.610
	CRR073298	Stem 2	35.083
	CRR073299	Stem 3	24.973
	CRR073300	Leaf 1	40.096
	CRR073301	Leaf 2	30.683
	CRR073302	Leaf 3	25.225
	CRR073303	Juvenile bud 1	30.733
	CRR073304	Juvenile bud 2	23.058
	CRR073305	Juvenile bud 3	41.232
	CRR073306	Third green 1	19.279
	CRR073307	Third green 2	15.367
	CRR073308	Third green 3	22.364
	CRR073309	Second white 1	24.203
	CRR073310	Second white 2	33.213
	CRR073311	Second white 3	34.446
	CRR073312	Silver flowering 1	29.550
	CRR073313	Silver flowering 2	31.143
	CRR073314	Silver flowering 3	32.193
	CRR073315	Gold flowering 1	13.402
	CRR073316	Gold flowering 2	27.200
	CRR073317	Gold flowering 3	15.236
	CRR073318	Tawny withering 1	30.928
	CRR073319	Tawny withering 2	26.427
	CRR073320	Tawny withering 3	29.184